bsk146 (bsk146,LOC108273750,LOC107653993,LOC107719718,LOC108424854,LOC791840)


Basic Information

Item Value
gene id bsk146
gene name bsk146,LOC108273750,LOC107653993,LOC107719718,LOC108424854,LOC791840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8836049 ~ 8846681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914487.2
TTTCAGCTCGAGAAGGACAATAGCGGCGGAGCGGAGAGAAATTACTGCACAGTCTGGACCAGTGAAACACCACAAATGCGGatagaggaaaaacaaacacacgcCGGTATTTGGGCAAGAAGGGAATGTCTGGTGTTTACTGAGGGAGGGATATATATTTCTGGCTTGAACAGGCAGAATAAGAAACACGGACTGATTTAATGTAACGTTAAGTGGTTGCCAGCACTCTCACTCTCCACACCTGCTCCTGTGGAAAAATGAGCTCCTCTCCTGTCGTGTCTCGAGTGTCTGTCGACATCCTGGAGGAGCTGCAGCTCTTCGCCGCTCAGAACCTGGAGAAGCTCGAGGTTAACAAGTACTATGAGGTTATCCGAGAGCTGGGTAAAGGCACCTATGGCAAGGTGGACCTGGTCATTCATAAGATCAGAGGTACCAAGATGGCACTAAAATTCCTCAAGAAGAAAACCACTAAGCTAAAGAGTTTTTTGAGAGAGTACAGCATCTCACTGTACCTCTCCCCATGTCCCTTTATAATCAACATGTTTGGTATTGCTTTTGAAACAGAGGATTACTACGTGTTTGCACAGGAGTATGCCTTAGCAGGGGATCTCTTTGACATCATTCCTCCACAGGTGGGACTTCCGGAGCCTGTGGCCAAGCGTTGCGTCCACCAGGTGGCCCTTGCCTTGGACTACCTGCACTGTAAGAAGTTGGTGCACCGCGACATCAAGCCAGAGAACGTGCTGCTCTTTGACAGGGAGTGCCGCAGGGTGAAGCTCTCTGATTTCGGCATGGCGCGGTGCGCCGGCTCTGTGGTGAAGCGTGTCAGTGGCACCATTCCGTACACAGCTCCCGAGCTGAGCGATGCCTCCCAGCGTGATGGCATCTGTGTAGACTACAGCACAGATGTGTGGGCCCTGGGTGTGCTTCTTTTCTGCATGCTTACTGGCAACTTCCCCTGGGAGAAGGCCGTGCCCTCGGATACGTTCTATGACGAGTTTGCCCGCTGGCAGCGGAGGCCGACAGGCACGGTCCCCTCGCAGTGGCGCCGCTTCAGTGATGAGGTGCTAATCATGTTCCGCAAACTACTGGCCCTGGAGAGGGAACGCCGCTGCTCTGTCAAGGAGGTGTTCGCCCATTTTGGCCAACGCTGGATGCTGGATGTAGAAGCAGGCAGAGGCGGGGGAGGAGGACACCACCAGGTGGCGCACAGCTCTTCttcagaggaggaggagctgctGGTGGACCGGATGAAACAGCAGACCCTCTCACCAGGCAAGAATGGTCCAGTGGAAGCAGGAATGGCCGCTCATCACTTCAGCTCAGTGTCCACCAACAGCTCGGTGTCATCCACTACCAGCTATGAGCGTATGCCCAGAGACAACGCCACCAGCAGCCGCATCCTTGTCACTACACCGATCGAGATCTGTGTGTAGAGCTCACCACCGTACATAAACGAAAACACGGTTTCCTTACCTGATAATACATTTTCTCACACcttcataaaaaaatttatcGCATAAGTAAACCATCTTTCAAGGGTATTATAACACCGCTGAGTGTGAATGAAGCAAAAAATTAGATACACCCTCTAATTTATCGAGCTGGTTTTGTGAttattgtgagttttttttttcaaacaaggACACATTGCACTCTTTTGGGAAAGATCTTCCTCAGTGGAATTCCTTTAAGAAAGGAAGTGCACAGAAGCTGCAAAATAGACTAATACAATAGATGCACCACTAAAGCAGATCACaagtatttaagaaaaaaaaacaaaaaacaaaaacaaaaaaactacacaaTGTAATTGAGCACTGATACAGCGGATCTAGAGTAATGATTAGGGCTAGACCAAAACATATTCCTTAAAGCAATATATGATGCAAAAAAGCATGTGGGAGAACTGTTTGGATCTACATTCTTGATATGGTGTATTGATCCATTTTTGGGTGGAACTGGTGACGTGAAATGTTTCTAGGACTTATATTTGATGTCAAGGATATCTTTCAAAACACATTAGGGAGAAAAAGGGATGTTGCTTAAAGCGTGTGCTTCTgcgtgagtgtgtttgtgtattttgtagtGACTTGACATTTAGTTAtttcaactgtttttttttttgtttgatgtcTATATTCAGAAGTATATTTTTACAGTTGATTTGTAGGTAATTTAAtggtttacatttaatttattttggtaCTCTGTTGAAGCGCTTGTGCCAAGCCCAGCTGGCATTGTGCAGCCTCACTGCGATGTCTATGACTGTTTATTCCTGACAGCTTTAAAACAGGATAGAGAAGTGGCACTGAGGTTGGCTGCTTATTGTTCTTGGCTCAAAGGAGTGACAAGTGGAACAGATCTCATGccagtgagagagagcagagcCTAAAGCCAGCTGTCAATTTTatcagcttttttcccccatgcagAATTTAAGAAGGATAAAACTATTATGGTGCAGTGGTTAAGCTTCTTTGCCTGTActgaaggttatgagttcaaatcctgaagCTAGCCACTATTGGCCcattaaccctcaactgctcacaTATTTGATTGGATTGTGCCTCATTTGCCAAacaagtaaatgtaaatataacgactattgtttttatgtcttttgcATATCCGGTATTACCTTTCAATCCAAGTGAAGCCCTAATGACCTGCATTAATTATGCTGGTTTCACAGGGGTGATGCAGTATAGTTTGAGATGagaggaagatttttttttaacctcagaaAGTGTCGACTCGCATGACCAGGTTCATCCAGGTTGTTGATTGTGACCAGGTTCGAGATCCATTGCCGGATCAGTGGGTTGCACTTTGCCGACCAGCCCTCGATGTCAAAACAACATATCTATTTCAAGACTTACAGGTACAAAGGAAGTATTTTTGCTGATtctctattatttatttctattgttTTCCTTACAAAttgttacatatatttttttgtatattgaTTTGAACTTTTACAAGAAACAAATGACAGTGGAGTGCACACGGACGCATCTACCAATTGCATGAAACAAGCATCCtaactaggaaaaaaaaaatctgttgtaaATTGTGAGAATTGTTGTAATGTgagtttatttttgctgtagcACAATTTCTTGGGGACTGTTCCAGAGTCAGATCAATGGTATAATTTAGAAAGTTTAGGgctaaattataaaaaaaa

Function

symbol description
bsk146 Enables protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and peptidyl-threonine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; eye; and immature eye.

NR:

description
serine/threonine-protein kinase SBK1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914487.2 True 3199 mRNA 0.44 4 8836049 8846681

Neighbor

gene id symbol gene type direction distance location
wu:fj29h11 LOC108273747 coding upstream 1593 8791190 ~ 8834456 (+)
LOC113527546 LOC108274314,LOC108413941,LOC108443187 coding upstream 46306 8786292 ~ 8789743 (+)
si:ch211-176g6.2 LOC108274352 coding upstream 55204 8754318 ~ 8780845 (+)
tob1b LOC108274231,LOC107595632,LOC108443190,LOC107719743,LOC107653989,LOC103025012,LOC107693641,LOC107562678 coding upstream 205692 8626799 ~ 8630357 (+)
spag9b spag9,LOC108273832 coding upstream 246582 8546806 ~ 8589467 (+)
dhrs7cb dhrs7c,LOC107720435,LOC107653938 coding downstream 52329 8899010 ~ 8906390 (+)
hs3st3l LOC108273751 coding downstream 81124 8927805 ~ 8940831 (+)
LOC113527204 glp2r coding downstream 166972 9013653 ~ 9025559 (+)
pts pts,LOC107081163 coding downstream 183571 9030252 ~ 9035170 (+)
LOC113527360 LOC108274022,LOC108424857,LOC105888776,LOC107653912 coding downstream 194143 9040824 ~ 9090546 (+)
LOC117598667 NA non-coding upstream 234279 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 320115 8514382 ~ 8515934 (+)
G192737 NA non-coding upstream 447932 8310878 ~ 8388117 (+)
G192716 NA non-coding upstream 565823 8269148 ~ 8270226 (+)
LOC117598703 NA non-coding upstream 574626 8259214 ~ 8261423 (+)
G192858 NA non-coding downstream 71359 8918040 ~ 8918245 (+)
G193170 NA non-coding downstream 210718 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 311478 9158159 ~ 9158568 (+)
G193168 NA non-coding downstream 312752 9159433 ~ 9184089 (+)
G193386 NA non-coding downstream 532592 9379273 ~ 9380115 (+)
G192484 ank3 other upstream 1207938 7605981 ~ 7628111 (+)
tfam tfam other upstream 1399677 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 1999666 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2107658 6725321 ~ 6728391 (+)
G191581 NA other upstream 2852812 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 421812 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 521562 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 665488 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 665879 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 666103 9512784 ~ 9515616 (+)

Expression


Co-expression Network