capgb (capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072)


Basic Information

Item Value
gene id capgb
gene name capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23402183 ~ 23420064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914512.2
GGTGGGTGTGCTATGAGCCGTGACTCAgaggagaaacaggaagtgtttagTGCTCAAAGTCTTCTCCTCGTCTGCTAAATCTCTTCCTCTGTTTTTCTTCAAACTAAGAAAAAGTTCTCAGTAGTACTAACTACAGCAAGAATGCTCCCCTTCCAGGCCGCTCCGGATCAGTTCGGGCCCGAGGTGAGGCAGCCGGGTCTGCACTGCTGGCGGGTGGAGAAGCTGAAGGCCGTGCCGCTGGCTGCGTCTGAATTCGGCGCTTTCTATAACGGTGACTCTTACCTGGTGCTGCAAAACAGAGGAGACGATGGAGCCGATCTGCACATGTGGATCGGTGAGAAGTCATCTCGTGATGAGCAGGTTGCTTGTGCCATGTTGGCCACCCAGCTGGATAACTTCCTGGGTGGAGAACCCGTCCAGCACAGACAGGTGCAGGGCTACGAGACGCCCGAGTTCATGAACCTCTTCCCCAGGGGAGTCAGCTATAAGgaagGAGGAGTGGAGTCAGCTTTTAGAAAACAGCAGTCTGGCTCTGGTCCCGTTCAGAGGTTGTATCACATTAAGGGGAAGAAAAACATCAGGGCGAAGGAGGTGGCGCTGAACTGGTCCAGCTTTAATAAAGGAGACTGCTTCATCCTTGACCtgggagagaCGATCGTGTCATGGGTCGGCTCTCAGGCCAATATATTTGAGAAGCAGAAGGTGCGAGAGATCGCCTCTCTCatcagagacactgagagacacgGCAAAGCGCAGATCACTAACATCAATGAGGGAGAGGAGACGCCTGAGATGCTGAAGATTCTTGGTCCGATGCCGGCGCTTAAAGAGAGCAGTCCAGAGGACGACAGCCAAGCAGACGCATTGAACATAGCCTCTCTCTACAAGGTTTCAGATGCGACCGGGGCGATGAAGCTGACCAAAGTCTCAGAAAAGAGTCCGTTTGCCAAGGACCTGCTCGTACGTGACGACTGCTTCATCCTGGACAACGGCACCAACGGCAAGATCTTCGTCTGGAAAGGCAGTGGTGCTAATGctgaagagaaaaaagcagCTCTGAAGGTCGCAGATGATTTTATACAGAAGATGAACTACCCCAGGATGAAAACGCAGGTGGAGATCATACCACAGGGCCGAGAGACCGTCATCTTCAAGCAGTTCTTCCAAAACTGGAACTAAAATGTTCAGAATGATTCGGTTTACCTAAGGgtactgacaaaaaaaaaaaaattaaaa

Function

symbol description
capgb Predicted to enable actin filament binding activity. Predicted to be involved in actin filament severing and actin polymerization or depolymerization. Predicted to act upstream of or within barbed-end actin filament capping. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle. Orthologous to human CAPG (capping actin protein, gelsolin like).
capg Enables protein domain specific binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within cellular response to interferon-gamma. Located in several cellular components, including Flemming body; microtubule cytoskeleton; and nuclear lumen.

NR:

description
PREDICTED: macrophage-capping protein isoform X2

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K10368 CAPG; capping protein (actin filament), gelsolin-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914512.2 True 1236 mRNA 0.51 9 23402183 23420064

Neighbor

gene id symbol gene type direction distance location
LOC113527736 NA coding upstream 80955 23315593 ~ 23321228 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding upstream 136783 23239297 ~ 23265400 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding upstream 234696 23132483 ~ 23167487 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding upstream 548687 22849303 ~ 22853496 (+)
pkd1b LOC108273530,LOC108429150 coding upstream 554617 22807179 ~ 22847566 (+)
si:dkey-219e21.2 LOC108273732 coding downstream 6811 23426875 ~ 23436725 (+)
mfsd8 mfsd8 coding downstream 27079 23447143 ~ 23459505 (+)
si:dkey-219e21.4 LOC108273735 coding downstream 46293 23466357 ~ 23472229 (+)
ablim2 ablim2 coding downstream 120960 23541024 ~ 23600132 (+)
uros uros coding downstream 627499 24047563 ~ 24064984 (+)
G201234 NA non-coding upstream 21193 23375074 ~ 23380990 (+)
G201186 NA non-coding upstream 132764 23268627 ~ 23269419 (+)
G201077 NA non-coding upstream 296275 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 298684 23103284 ~ 23103499 (+)
G201019 NA non-coding upstream 533345 22866908 ~ 22868838 (+)
G201240 NA non-coding downstream 39938 23460002 ~ 23460455 (+)
G201281 NA non-coding downstream 280655 23700719 ~ 23729010 (+)
G201284 NA non-coding downstream 298983 23719047 ~ 23722939 (+)
G201297 NA non-coding downstream 318293 23738357 ~ 23740340 (+)
G201600 NA non-coding downstream 343001 23763065 ~ 23763266 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 3520 23272574 ~ 23398663 (+)
G201214 NA other upstream 72612 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 84029 23311260 ~ 23318154 (+)
G201154 NA other upstream 195804 23205666 ~ 23206379 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 530899 22798142 ~ 22871284 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 184773 23604837 ~ 23688417 (+)
G201962 NA other downstream 961723 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 1035595 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 1240980 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1909145 25329209 ~ 25428112 (+)

Expression


Co-expression Network