prodh2 (prodh2,zgc:92040)


Basic Information

Item Value
gene id prodh2
gene name prodh2,zgc:92040
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5502423 ~ 5509397 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914514.2
cctctttcatCCAAATTTTTCTTTCGTTGAGTATTCTCCCACCTGTCAGTTTTAGTTACAGCATTCACATAGTAATCACTCGTCTTTCTGGAAGTAACTGCTTGGGCTTGGGAAGGTATGAACTTGGACTTGAATGTCAAAGTATGCTGTTTGATAACTCATGGCAAATAGATAAGTGGATTTTTGTATAAATTTCAAGTGAGAGCTTTGTTGGATTTGAAGAGGGCAAGATCTCTGGAAAGCTCTACCAGAGGAGAGATTTGGACTTGGAATTATTTAAATTCCAGTTTGAGGATAAAGGGCTTCAAAATACACAAAGTTCTGCACAAAATCCACAGAGATGTCCTCTGTTCTCCGCTCGAgtattttacatcatttccaGTCCCTGCACATGATAGGTGTACGGACGCTGACATCAGAACGTGTGGGGTTTGCACCCGTCGGGAGTCATGAGCTCAGGGACCCGGTTCCACCTGCCCTGCTAGCTTTCAAGGACCCACGAGCGTTCCAGGTTAAGAGCTGGTGGGAGCTAATACGAGCGCTTGGGGTTTTTAGACTCTGCTCTTACCCTGTGCTGGTCAATAACTGTGGCAAGATTATGTCGTTTACACGGGCTATCCTGGGCAAACGAGTTTTCGCCATGGTCCTTCGGCCTTTTGTTTACGCTCAGTTTGTTGCTGGGGAAACAGAGAGTGAGATTGCAGTGTCCATGGAGAAGATGAACTCGCTTGGACTACATCCCATGTTGGCTGTTCCCATTGAAGAGGATCTAGGAGAAAGCTCTGGAGAGAAGAGGTATGATGACAACTTGGCAGCCATGTTGGAGTGTGTGCGCATGTCTCACAGCAATGGCTGGAGCAAAGATCCCATGATGCAGCTGAAGATCACTGCCTTGGTCAGCCCTGAGCTTTGTGTTAAGCTGACTTCCTTGCTGAAGAAGCAACATTATGATCTTGACCTTTTGGTTAGAGCAATGGACGGAGAGGCTATTACATTTCCTGGGCTCAGtgaaactgaaaacacacattttctacTTGGACTCAAGAGACTAAACCAAATTGGAGAGGCAAGTGTTAACAAAGTCAGAGTTCTAGTGGATGCCGAGTACACGTACATGAATCCTGCGCTCTCTCTCATCACCATGGCCATGATGAAGAAGTTCAATCGAGATAGTGCCTGGATCTGGAACACATACCAATGCTACCTGAAGGAGTCCAGAGACCTTGTGTTTGATGCTATCCGCTTGTCTGTGGACCAGTCTTTCTGCCTTGGGGTTAAACTTGTCCGAGGTGCATATATGGACAAGGAGAGGAAGCTGGCTAAAAAGGAAGGACGAGCTGACCCCATTCACCAATCCTGGGAGCACACAAATGATAGCTACAACGGATCTCTGGAAGTGATGCTTAACCTGATTTCCCAGCAGCCTGACCACTACAAGATCATTGTAGCAACTCACAATGAAGAATCTGTTAGAAAGGCAGTGACATGGATGACTGAGTTAGGGATTGCTCGAGACAGGGGttcagtgtgttttggtcaACTTCTGGGGATGTGTGATCATGTGTCTCTCACTCTGGCTCAGCAGGGTTTCTCAGTGTATAAGTCCGTTCCTTATGGCTCAGTGGATGACACGCTGCCGTATCTGGTACGGAGGGCTCAGGAGAACCGCACCGTGTTGCAGGGGATCCGCAAAGAGAGAGACCTGCTGAGGCAAGAGCTACGTCGTAGAGTCCGGGAGAAGATCACTCGAGCAAagtagagagagggagaacgaGCAAAAAAACGACAAATcagagaaaatgcagaaaaaagggTCTGCAATATGAATGTGGTTTGTTGGTAGTTATGATAGTTACATGTAGGTATGTGACAAAAGGGTGACTATGGCATACCTATAGAAAATTAAAGGGAATTTATTTAGACTGCTGTTTTTGCTTAGGTGTTGGCTAAACTGATGTCTTGAGTTGAAGTAAAAGCAAGCGAAAAGtaattggtaaaaaaaaaaaaaaaaaaa

Function

symbol description
zgc:92040 Predicted to enable FAD binding activity and proline dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to act upstream of or within proline catabolic process. Predicted to be active in mitochondrion. Is expressed in liver; pancreas; pronephric duct; and yolk syncytial layer. Orthologous to human PRODH2 (proline dehydrogenase 2).
prodh2 Enables oxidoreductase activity, acting on the CH-NH group of donors. Predicted to be involved in proline catabolic process to glutamate. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion.

NR:

description
hydroxyproline dehydrogenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006537 glutamate biosynthetic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0004657 proline dehydrogenase activity molecular_function

KEGG:

id description
K11394 PRODH2; hydroxyproline dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914514.2 True 2014 mRNA 0.45 11 5502423 5509397

Neighbor

gene id symbol gene type direction distance location
trnav-uac_7 NA coding downstream 28953 5473398 ~ 5473470 (-)
lrrc45 lrrc45,LOC107736618 coding downstream 46064 5446472 ~ 5456359 (-)
sgca LOC108273949,LOC108444285 coding downstream 85816 5405182 ~ 5416607 (-)
LOC113527073 LOC108274342,LOC108274341 coding downstream 179948 5312244 ~ 5322475 (-)
trnai-uau_5 NA coding downstream 200218 5302113 ~ 5302205 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 3370 5512767 ~ 5526387 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 19252 5528649 ~ 5539726 (-)
si:ch211-136m16.8 NA coding upstream 31489 5540886 ~ 5545885 (-)
LOC117598535 NA coding upstream 36444 5545841 ~ 5554907 (-)
si:ch211-180a12.2 LOC108273640 coding upstream 46560 5555957 ~ 5572889 (-)
G191424 NA non-coding downstream 17756 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 57256 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 115286 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 751546 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 835852 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 156776 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 158487 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 179197 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 230581 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 426142 5935539 ~ 5938213 (-)
gdpd3b gdpd3 other downstream 11498 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 439005 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 549564 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 583446 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2646930 2852055 ~ 2855493 (-)
G191430 NA other upstream 101723 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 259131 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1037544 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1890603 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 2071953 7581350 ~ 7595881 (-)

Expression


Co-expression Network