sost (sost)


Basic Information

Item Value
gene id sost
gene name sost
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11664117 ~ 11669446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914515.2
TGCGCCGGGCCGCTTAATTACGAGGCTCGCGCGGAGTCTGAGCTACTTAAACGGCTCCCGGATGGGAGAGCTCAGAGAGTTCAGTGAAATTCCGCTGTGCTGAAGTTTGCctcagtgcagtgttagtgtgttagtgtgtgcgCTCGCTtgcagtgttagtgtgttagtgtgtgagtcaTGCAGGTGAGCTGGGTGGTGATGTACCGGAGCgcggtgctgctgctgctgcagggCTGCCTGAGCGCCGCCGCCGGAGGATGGAGAGAGCTGAAGAACGACGCTACGGAGCTGATCCCGGAGTACACCAGCCACACAGCACATCCAGACCACCAGCTTCAGCCACCTAACAACAACACGATGAACGAAGCCAAAAACGGGGGCAGGAGGCAGTCAGCTAACAGCCCTGCATATGAAGCCTCTGAGCTGAGCTGCCGAGAGCTGCGCTCTACCCGCTACATCACTGATGGTTCATGTCGTAGTGCCAAGCCAGTGAATGAGCTTGTGTGTTCAGGCCAGTGCCTGCCTGCTCATCTGATGTTCAACTCCATCCTTCGGAGCAAGTGGTGGCGCAGCAGCTCTACTGACTACCGCTGCATTCCAGCGCACTACCGCATGCAACGTGTGCAGCTCCACTGCCCCAACGGCAACAGTCGGACCTACAAAATCCGAGTGGTGACCTCCTGCAAGTGCAAGCGCTTCACCCGGCACCACAACCAGTCAGACGCCAAGGATCCGACTTCTCAAAGAACACGGCACAGCAAGAAGCGTGCACGTCTCCAGCAAACACGGGGCCGAAGCAGAGAGCCTACTATCAGCAGCAACTCGTACTGAGAAGCAGCCCTCCATGTATGTGAGCTCATACAAagactctgtctgtctctctcacacacacactcacatacatacacacacaatcacattttGTCCAAATGCCAATCCACAAGTTCAAGGGAAAGAAGACTAAATAGAGATAACAACTTGGCTGAAGTATTTCTCTGCATGTTCACCATTTAATGAGATCAGCAAGTCTTCGATGTGTTTCGCATATCACAAACTTTGCATGGCCAATTGAGCTTGAATTAATCCCAATAACAGAGATGTTTGAGAACAGAAAAGCGGAGGACTGTTGGACTTAAACTGATGTTTGTAGTTGTGGGAGATCAGTGTAGAGAATCTGAtggtttatactgtatattcacagTATTCCTGTGGAGGGCTGATGATCTAATTTTCTTGAAGTTCATTATAAGGGTGATCAAGATGAACATTGACACCAAAGTTAACAAGCATAACCATGACCAAATCCTACATCAGCGAGGCTGCAAGCTTATGGCCGAGGTGAATGTTTGTATAGCTGAAATGAAGTCATCTCTTTCGGGTGTGCTGTAACTCATGATCCAGCTGCCCAGGAGTGCTGGGCTCAGAAAACGTGCTGCTGGTGACACATTGCTGAAATCCAGCATTCTTAACCCTGGTCACATGCAAGGAACTCATCTGACAGGCTGCGGTGCTGAATTCCCACAGCCTTACCTTTCCAGAAGAGACCATATAGGAGCTGTCAGCTGGAGCCAAGCCCACTGTCAGTGACAGAAAGTGGGAACGGTTGTGTCAGCATTCCACGAGCTGAGTCTGTTAGGGCCAAGAGCAGCAAACACTGTTCCTCTGTCCTGTCTTAATTACTAAATAGACCCATTCCTGTGTTTAGGATTTGAGTCATAAAAAGCCATTTCCTCTAGACGTGGTCAGTTCCTGTTTGTTTGAATAGCAGAAAAAGGGGGACCACATGCATGTAGGAATCTACAACAATTGTGCCTGTTGTTACCTTAGGGGCAGAGCACTTTTCTACCGCCCCCGTTTTCTGGAAACCATTTGGAGCTTCTTGGCCAGTTGGAGTAACTAAGTAGTGTTAATGGTTATCTAATTGTAATAACAGTGAGATTTAAATGCAAGGACATTAAAACAACAATCATCATGTACAAACTACATGTAATCTAGTATACCATTTAATTATAAAAGCTTCCGGTATATTATACAATGTATAAGCTTTACAAATGTGCTGTGAAATTAATTGGAGATTGACTTCAGCTCtggatgaaaaatgacttgACAGAATGTCGATGTCCTCCAGCGGAGCCGTGAAAAACAGTGTGCTTTTAACAACTGGAGCTGCCCAAAGAATCAATTCCTCAAACATCCTTAGGGGAGCTTTAAGAGACAAACATGAAATACGGGACTGAACTCTGGATGTAAGCACATGTTGATATTACACAGGATGTACAGTAGGAGAGCTGTGGAATCCCAAGCCAGACATTTGCCTGTCACATCCAATCCAAGTGTCTCGCCTCCAGTATATCTAATGAAGAATATTTCACTCATGTTCGGACATTGTTCAACTCCAGAATTTTTTCCCTGTGGCTTCCCATCTCTGTTTTCTATACATAATTAATTgtgtttgcttctttttttcaattgtATGTTTGAAAAAGAAACTGGAAGGTTATTTTTTCTTGTCATGTAAGCCAAATTGCCATGTATAACCAGATTGGACACAGTGTACTTACCTGGTTTGTTGATACAAATCCCTTCAAATGAGTACTGGATGGAAGGATTGCAACCCTCTCCAATCCTGAAAGAGACTCCTACAAATAATgaactgtatatttatttttgaatttcaacatttaaattatttatgcaaccttttttgtaatataaaataatagccattattgttatatatgaaataatagTGAATTTCCTAACAAAAAGAGAACACAAATAAAGTAAGTCAAAGTATA

Function

symbol description
sost Predicted to enable BMP binding activity. Predicted to be involved in negative regulation of BMP signaling pathway; negative regulation of Wnt signaling pathway; and ossification. Predicted to act upstream of or within Wnt signaling pathway and negative regulation of ossification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including Kupffer's vesicle; endochondral bone; nervous system; notochord outer sheath cell; and pharyngeal arch cartilage. Human ortholog(s) of this gene implicated in SOST-related sclerosing bone dysplasia; autosomal dominant craniodiaphyseal dysplasia; sclerosteosis; and sclerosteosis 1. Orthologous to human SOST (sclerostin).

NR:

description
PREDICTED: sclerostin

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K16834 SOST; sclerostin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914515.2 True 2798 mRNA 0.45 2 11664117 11669446

Neighbor

gene id symbol gene type direction distance location
dusp3a dusp3,dusp3a,LOC107669488,LOC107552769,LOC107666929 coding upstream 8267 11645860 ~ 11655850 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107727318 coding upstream 36553 11624596 ~ 11627564 (+)
nbr1a LOC108273956,LOC108413416 coding upstream 51759 11602599 ~ 11612358 (+)
skap1 skap2,LOC108273959 coding upstream 67040 11570656 ~ 11597077 (+)
hoxb1b NA coding upstream 99876 11562931 ~ 11564241 (+)
meox1 meox1,LOC107577625 coding downstream 55957 11725403 ~ 11731988 (+)
etv4 etv4,LOC107706904,LOC107552771 coding downstream 90535 11759981 ~ 11784148 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding downstream 126471 11795917 ~ 11831664 (+)
cacna1g cacna1g coding downstream 187948 11857394 ~ 12033353 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding downstream 472114 12141560 ~ 12142743 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 61676 11597530 ~ 11602441 (+)
G194627 NA non-coding upstream 71026 11592892 ~ 11593091 (+)
G194571 LOC108273766 non-coding upstream 284927 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 457141 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 543567 11120318 ~ 11120550 (+)
G194748 NA non-coding downstream 49451 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 369057 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 470566 12140012 ~ 12140220 (+)
G195002 NA non-coding downstream 475555 12145001 ~ 12145207 (+)
G195016 NA non-coding downstream 504948 12174394 ~ 12176119 (+)
tmem106a tmem106a other upstream 42848 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 377849 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 415904 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1017570 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1972522 9655287 ~ 9691595 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 393362 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 803233 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1289489 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1813855 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 2344127 14013573 ~ 14034143 (+)

Expression


Co-expression Network