noc3l (noc3l)


Basic Information

Item Value
gene id noc3l
gene name noc3l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6417476 ~ 6436006 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914548.2
GTCACTGgctgtttcctgtgtgtgtgaggcgcATGTgaggggatgtgtgtgtgcaggagaaCAGAGCAGGGCTGAGTGAGCTTTCCACGCTGCTGTAAACCACTCTGAGGCTCCAGGAGAacagagtcagtgagagagtCAGTGAGGGAGTCAGTGAGAAACATGGCGGCGGCTACGAAAAagcacaagaagaagaagaagccgaGCTTCCGCAAGCTGCTGAAAACCAGCAACATCAAGCTGGATAACAAGCTGAAGAACCGTCAGTTCAAGCAGCAGAGCACGGCCAAGAAGCAGCGCAAGGAGCAGAGGAAACTGCGGCAGGCCCTCAGTGATGCGTCCCAGCAGACCGTACAGCCGTTAGAGCGCTACGAGAAGAAGCCAGaggaggaagatgatgaggaggagtTTCTGGAGTCGCTGCCCACTGATATGATGGAGGACGACGACCTGGAGGAGATCAGAGCAATGGCTCAGAAAGCCTCGTTCCTCACAAGAGACCTTTCCTCCTGTGCTCCTGCTCACACCAAAAAGCGCAAGTCGGACCAGATGTTAGAAAAGTACGAGAAGATGCCCAGGAAGTTGAAacaagaggaagagaaggaggtcATTCATCTGCTGCCAATCAAAGACAAGAGCGGCCTGATCCCTCAAACCATGGAGAAGCCAGTGGTGCGGAAAGCAGACGAGGAGGATGAACAGGAGGAAGCGAACGACGAAGACGAGTCAGAGCAAGcAGTGGAAGAAGCACAGAGCTTCCTGACACTGACTCCACAAGAACAGCTGAAGCTTCGCTCACAGAAGCTGATGGAGAGGAAATTACGCATCGCGAGCTTGGGATCAGTTATTCTAGCTGATCCAAACTCTAACATTAAGAAGCTGAAGGAGCTACGGGCCATGCTGATGGAGACGGACCCGTGCGTGGCTGTTACGGTCAGGAAGCTGGTCATGGTCTCACTTATGGAGATCTTCAAGGACATAGTGCCCTCTTACAGGATCCGTCCTctgactgaagaagaaaaaaagaccaaGGTAAAAAAGGAGACCCAGCAGCTAAGAGAGTTTGAGGAGGGGCTCGTAAGTCAGTATAAATTCTACTTGGAGAATCTGGAGCAGACTGTCAAAGACTGGaagcagaagaagcagaaggGCAGTCAGGCCGTGGCTCTGGCCTCCTATAAAGGCCTGGCCGAAGTGGCCGTCAGGTGTCTGTCCGAACTGCTGGTGGCTTTGCCGCACTTCAACTTCCACAACAATATCATCGTCGCCGTGGTGGCGCTGATGAGCGACCCGACCAAGAAGGTGTCAGAGATGTGCTGTGAAGCAGTCAGGAATCTGCTGAAGCAGGACAAGCTGGGCCAGGCTTCACTAGCCACAGTGAGGGTCATCTCAGGAATGGTCAAAGGCAGGAACTACAACGTTAAACCAGAGgtcctGAACACATTGCTGTCCCTAAGGATAAAAGAGGTGGATGTGAAGAAGGACACAGAAGACCTGGCCCCCAAACAAAAGTTCATGAACTTccaagagaagaagaagaacctgTCCAGGATGCAGAGGAAGTGGAAGAAAGCTGAAGAGAAACTCCAGAAAGAGCTGCTAGAGACCGAAGCGTCTGAGAGCAAGTACAAGAAGCTCAAGCTGcacacagagacactgaacaTCGTGTTCCTGATCTACTTCAGAATCCTGAAGAAAGCCCAGAAGTCCGTCTTGCTTCCCTCCGTTTTAGAAGGTTTAGCAAAGTTTGCTCATCTCATAAACTTGGAGTTCTTTGATGATCTGCTCACAGTTCTTCATGATTTAATTATGTCCGGCGATCTGTCACACCGAGAGAGTCTCCACTGCATCCTCACAGCCTTCCACATCCTGTCAGGTCAAGGTGACGTGCTCAATGTCGACCCGCTGAAATTCTACACCCACTTGTACAAAACCCTGCTTACACTGCGCGCAGGCGCGTCAAACGAGGACACAGGCATCGTGCTGCAGTGTGTGGACGTGATGCTGAGCAAGCGCAGGAAGCAGGTCAGCCTGCACAGAGCGCTGGCTTTCCTCAAGAGACTCGACACACTCGCTCTGCACGTGATGCCTGACTCGTGTGTGGGCATCCTGGCGGCTAACAGGGCACTCATACATacCTTCCCCAAGTGTGACATCATGCTGGATAACGACATGCAGGGCAGCGGTGTGTATCTGCCTGAGCTGGATGAGCCGGAGTACTGCAACCCTCAGAACACCTGCCTGTGGGAGCTGCACACACTCAAGagaCACTACCACCCGACGGTGAGGAAATACGCCACTCATCTGCTGGCTGGAGCTCCGAGTGAAGGTGCCGGTGCACTGAGTTTAGAACTGAGCAGAagAGCACCAGTGCAGCTGTTTGAAGACTACAGCGTGAAGGACATGACCTTTAACCCACCAGTTGCAGGACCACCCAAGAAGAAGGAACATTTCACAATTGGAGAGGCTTTCCTGGACTCGGGTTTGAAAGCGCAGATCGATGCAGCGCTTCAGGAGGACGAGCAAATACCCCTCGACTTTGCAGCACATCTTTCACAGAAGTGAGCGAAGCTGGTGTAACTGTAAATACGTCTGTAATAAGATGTTTTATATCGCtgtgtttcaaataaaaaagggaaaagttTGTTCCCAAGTGGCCTTTCAACTAGAAA
>XM_026914550.2
TCACTGgctgtttcctgtgtgtgtgaggcgcATGTgaggggatgtgtgtgtgcaggagaaCAGAGCAGGGCTGAGTGAGCTTTCCACGCTGCTGTAAACCACTCTGAGGCTCCAGGAGAacagagtcagtgagagagtCAGTGAGGGAGTCAGTGAGAAACATGGCGGCGGCTACGAAAAagcacaagaagaagaagaagccgaGCTTCCGCAAGCTGCTGAAAACCAGCAACATCAAGCTGGATAACAAGCTGAAGAACCGTCAGTTCAAGCAGCAGAGCACGGCCAAGAAGCAGCGCAAGGAGCAGAGGAAACTGCGGCAGGCCCTCAGTGATGCGTCCCAGCAGACCGTACAGCCGTTAGAGCGCTACGAGAAGAAGCCAGaggaggaagatgatgaggaggagtTTCTGGAGTCGCTGCCCACTGATATGATGGAGGACGACGACCTGGAGGAGATCAGAGCAATGGCTCAGAAAGCCTCGTTCCTCACAAGAGACCTTTCCTCCTGTGCTCCTGCTCACACCAAAAAGCGCAAGTCGGACCAGATGTTAGAAAAGTACGAGAAGATGCCCAGGAAGTTGAAacaagaggaagagaaggaggtcATTCATCTGCTGCCAATCAAAGACAAGAGCGGCCTGATCCCTCAAACCATGGAGAAGCCAGTGGTGCGGAAAGCAGACGAGGAGGATGAACAGGAGGAAGCGAACGACGAAGACGAGTCAGAGCAAGTGGAAGAAGCACAGAGCTTCCTGACACTGACTCCACAAGAACAGCTGAAGCTTCGCTCACAGAAGCTGATGGAGAGGAAATTACGCATCGCGAGCTTGGGATCAGTTATTCTAGCTGATCCAAACTCTAACATTAAGAAGCTGAAGGAGCTACGGGCCATGCTGATGGAGACGGACCCGTGCGTGGCTGTTACGGTCAGGAAGCTGGTCATGGTCTCACTTATGGAGATCTTCAAGGACATAGTGCCCTCTTACAGGATCCGTCCTctgactgaagaagaaaaaaagaccaaGGTAAAAAAGGAGACCCAGCAGCTAAGAGAGTTTGAGGAGGGGCTCGTAAGTCAGTATAAATTCTACTTGGAGAATCTGGAGCAGACTGTCAAAGACTGGaagcagaagaagcagaaggGCAGTCAGGCCGTGGCTCTGGCCTCCTATAAAGGCCTGGCCGAAGTGGCCGTCAGGTGTCTGTCCGAACTGCTGGTGGCTTTGCCGCACTTCAACTTCCACAACAATATCATCGTCGCCGTGGTGGCGCTGATGAGCGACCCGACCAAGAAGGTGTCAGAGATGTGCTGTGAAGCAGTCAGGAATCTGCTGAAGCAGGACAAGCTGGGCCAGGCTTCACTAGCCACAGTGAGGGTCATCTCAGGAATGGTCAAAGGCAGGAACTACAACGTTAAACCAGAGgtcctGAACACATTGCTGTCCCTAAGGATAAAAGAGGTGGATGTGAAGAAGGACACAGAAGACCTGGCCCCCAAACAAAAGTTCATGAACTTccaagagaagaagaagaacctgTCCAGGATGCAGAGGAAGTGGAAGAAAGCTGAAGAGAAACTCCAGAAAGAGCTGCTAGAGACCGAAGCGTCTGAGAGCAAGTACAAGAAGCTCAAGCTGcacacagagacactgaacaTCGTGTTCCTGATCTACTTCAGAATCCTGAAGAAAGCCCAGAAGTCCGTCTTGCTTCCCTCCGTTTTAGAAGGTTTAGCAAAGTTTGCTCATCTCATAAACTTGGAGTTCTTTGATGATCTGCTCACAGTTCTTCATGATTTAATTATGTCCGGCGATCTGTCACACCGAGAGAGTCTCCACTGCATCCTCACAGCCTTCCACATCCTGTCAGGTCAAGGTGACGTGCTCAATGTCGACCCGCTGAAATTCTACACCCACTTGTACAAAACCCTGCTTACACTGCGCGCAGGCGCGTCAAACGAGGACACAGGCATCGTGCTGCAGTGTGTGGACGTGATGCTGAGCAAGCGCAGGAAGCAGGTCAGCCTGCACAGAGCGCTGGCTTTCCTCAAGAGACTCGACACACTCGCTCTGCACGTGATGCCTGACTCGTGTGTGGGCATCCTGGCGGCTAACAGGGCACTCATACATacCTTCCCCAAGTGTGACATCATGCTGGATAACGACATGCAGGGCAGCGGTGTGTATCTGCCTGAGCTGGATGAGCCGGAGTACTGCAACCCTCAGAACACCTGCCTGTGGGAGCTGCACACACTCAAGagaCACTACCACCCGACGGTGAGGAAATACGCCACTCATCTGCTGGCTGGAGCTCCGAGTGAAGGTGCCGGTGCACTGAGTTTAGAACTGAGCAGAagAGCACCAGTGCAGCTGTTTGAAGACTACAGCGTGAAGGACATGACCTTTAACCCACCAGTTGCAGGACCACCCAAGAAGAAGGAACATTTCACAATTGGAGAGGCTTTCCTGGACTCGGGTTTGAAAGCGCAGATCGATGCAGCGCTTCAGGAGGACGAGCAAATACCCCTCGACTTTGCAGCACATCTTTCACAGAAGTGAGCGAAGCTGGTGTAACTGTAAATACGTCTGTAATAAGATGTTTTATATCGCtgtgtttcaaataaaaaagggaaaagttTGTTCCCAAGTGGCCTTTCAACTAGAAA

Function

symbol description
noc3l Predicted to enable chromatin binding activity. Acts upstream of or within muscle organ development and regulation of lipid metabolic process. Located in nucleus. Is expressed in several structures, including alar plate midbrain region; brain; head; immature eye; and trunk. Orthologous to human NOC3L (NOC3 like DNA replication regulator).

NR:

description
nucleolar complex protein 3 homolog

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0007517 muscle organ development biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14834 NOC3; nucleolar complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914548.2 True 2672 mRNA 0.52 21 6417476 6436006
XM_026914550.2 False 2668 mRNA 0.52 21 6417476 6436005

Neighbor

gene id symbol gene type direction distance location
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 117497 6285060 ~ 6299979 (-)
rbp4 rbp4 coding downstream 146842 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 252542 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 262594 6153790 ~ 6154882 (-)
LOC117598661 NA coding downstream 282356 6129107 ~ 6135120 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding upstream 1673 6437679 ~ 6460359 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 29009 6465015 ~ 6504729 (-)
abi3b LOC108273397 coding upstream 71844 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 201349 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 291575 6727581 ~ 6740582 (-)
G191788 NA non-coding downstream 121683 6293530 ~ 6295793 (-)
G191786 NA non-coding downstream 126564 6290411 ~ 6290912 (-)
LOC117598466 NA non-coding downstream 155878 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 165294 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 197095 6219812 ~ 6220381 (-)
G191947 NA non-coding upstream 27482 6463488 ~ 6488739 (-)
G191949 NA non-coding upstream 42183 6478189 ~ 6478817 (-)
G191950 NA non-coding upstream 43761 6479767 ~ 6481169 (-)
G192012 NA non-coding upstream 109026 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 185464 6621470 ~ 6622643 (-)
LOC113527291 LOC108274042 other downstream 626206 5768528 ~ 5791270 (-)
G191430 NA other downstream 803522 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 926551 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1354058 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1464617 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 110935 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 963994 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1145344 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1165212 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2411656 8847662 ~ 8857748 (-)

Expression


Co-expression Network