si:ch211-141o9.10 (si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178)


Basic Information

Item Value
gene id si:ch211-141o9.10
gene name si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11136857 ~ 11141931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914567.2
CAGACACGCCCCGCCCATACACAATGTAAAGGGGCGGGGCTGTACACATactcacgcacgcacacgcagaGAAAAGTTCATCACTTGGGCGCCATataaactattatttattaacGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA
>XM_026914568.2
AGCTTCTGCTAAACAACGCCGTCGCGCCCACAACACCATATTTGGCGAAATTCTAAAACTTATAAAGGCAAAACGTTAAACGCATTAGCTAGTTAACCGCTGAAATCTACCCCAAACACAGGACTAGAAACAAACTGTATGAGCTTAGCAACTAAACGGCTGTTATCAAGTATGCTCACGTCCAGTAGCTAATCCACTCGAGGCCTATTGATCAAGGAATCTCAACTTAATTTACGACGGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA
>XM_026914569.2
GCTGTACACATactcacgcacgcacacgcagaGAAAAGTTCATCACTTGGGCGCCATataaactattatttattaacGAATCAGGCTGATGGTGCTGGCTGTCCTCATCAGGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA
>XM_034309087.1
AGCTTCTGCTAAACAACGCCGTCGCGCCCACAACACCATATTTGGCGAAATTCTAAAACTTATAAAGGCAAAACGTTAAACGCATTAGCTAGTTAACCGCTGAAATCTACCCCAAACACAGGACTAGAAACAAACTGTATGAGCTTAGCAACTAAACGGCTGTTATCAAGTATGCTCACGTCCAGTAGCTAATCCACTCGAGGCCTATTGATCAAGGAATCTCAACTTAATTTACGACGGAATCAGGCTGATGGTGCTGGCTGTCCTCATCAGGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA
>XM_034309088.1
cttcatttaatgttttgGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA

Function

symbol description
si:ch211-141o9.10 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity and phosphoric diester hydrolase activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be active in mitochondrion and nucleus.

NR:

description
PREDICTED: probable endonuclease 4

GO: NA

KEGG:

id description
K01151 nfo; deoxyribonuclease IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914567.2 False 1245 mRNA 0.46 8 11138403 11141931
XM_026914568.2 False 1369 mRNA 0.45 8 11136857 11141931
XM_026914569.2 False 1241 mRNA 0.45 8 11138441 11141931
XM_034309087.1 True 1403 mRNA 0.45 8 11136857 11141931
XM_034309088.1 False 1147 mRNA 0.45 8 11138684 11141931

Neighbor

gene id symbol gene type direction distance location
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding upstream 36354 11096965 ~ 11100503 (+)
shisa9a shisa9 coding upstream 198978 10912118 ~ 10937879 (+)
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding upstream 315679 10812145 ~ 10821178 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 357282 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 408306 10726693 ~ 10728551 (+)
cdc42ep1a cdc42ep1 coding downstream 8151 11150082 ~ 11158390 (+)
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding downstream 44394 11186325 ~ 11200049 (+)
tefa LOC108273914 coding downstream 60625 11202556 ~ 11209717 (+)
aco2 aco2,LOC108273913,LOC107554054,LOC107692062,LOC107731401,LOC107734200,LOC107584097 coding downstream 74311 11216242 ~ 11225898 (+)
csdc2a csdc2,csdc2a,LOC101165181,LOC107584207,LOC105919973,LOC102235694 coding downstream 85814 11227745 ~ 11231747 (+)
G194380 NA non-coding upstream 16307 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 40679 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 73175 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 168824 10965638 ~ 10968033 (+)
G194276 NA non-coding upstream 171240 10964950 ~ 10965617 (+)
G194571 LOC108273766 non-coding downstream 236530 11378461 ~ 11379190 (+)
G194627 NA non-coding downstream 450961 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 455599 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 576966 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 896572 12038503 ~ 12038728 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 490310 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1445262 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1621241 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1623022 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1624226 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 91659 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 144266 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 471968 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 920877 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1330748 12472679 ~ 12473983 (+)

Expression


Co-expression Network