timm23a (timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858)


Basic Information

Item Value
gene id timm23a
gene name timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14330419 ~ 14334549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914571.2
ACGGCAGTGTGATGTCCTTCCGTTTTCCGACAGCACAGCGTGTTGGAGGTCAGAGATGCTGTTTCACACAACCGGCGATCAAAAATACGTTGTCCTTTAACTACATCATTAAATATTCggcattttatttaaacagaagtgTTATTGGCTCAGTATACAGTCGCTGAAAGGCACTGTCGCCGCCGCTCGTACGGAATCTGCCTGAGTTTCTCCCATAGCTAGCTGTAGCTAACGTTAGCAGTAGTTTCACCTCCTCACATTAGTTTGCCTTGGCCTGTCATCGTGGGGATCATGGATAACAACACTCCGGGATCAGGCGCTTATAAAGGAGGATTTGGTGGCATTTTTGGTGGTGGAGCCTCTGAGTATTCAAACACGACGCTAGCTGGAGTACCGCTGACTGGAATGAACCCGATCTCACCCTACCTCAATGTTGACCCTCGCTACCTTGTGCAGGATACAGAGGAATTTATATTACCAACTGGAGCAAACAAAACTCGTGGCCGCTTTGAACTAGCCTTCTTCACCATTGGAGGATCCTGCATGACTGGTGCTGCTTTCGGAACGCTGAACGGGCTTCGTCTGGGCCTGAAGGAGACCAGAGATATGGCATGGTCAAAACCCAGAAATGTACAAATAATAAACATGGTCACACGGCAGGGAGCATCATGGGCTAACACATTAGGATCAATAGCTCTGTTGTACAGCGTGTTTGGTGTAGCTATAGAAAAGGCCAGAGGAGCAGAAGATGACATTAACACAGTAGCTGCTGGCACATTAACAGGGATGATGTTTAAATCCACAGGTGGACTAAAAGGAGTTGCAAGAGGAGGACTTCTTGGATTAGCCGTGTCGGGATTATATGCCCTCTACAACAACTGGGATCACCTTAAAGGCACGGCTCCTATACGTTATTAAAGAGGACCCTGAGACCAAACCATGGACATTTTTACTCTAAGCCTATTCTCATCTCCCTTGTTCCATGTCCCATTATAGAGGGCAACGgaatggccaaaagtttgggATCCTTGGACCACCATATTTATTTTAGGCTTCACTGAAAGAGTATGATATGTGTGTGATCGTGTGATGTATATAATCAAAAATCCAAAAAGGATTTGGCCAAGTAAAATGTAGTCAAAATTTATGAAATACATGTATGTGTACAATCATAATATCAAGGCTGTATTGTACTGCAGGTCAGCTCTGGGCTGACTGAAGCACCATtatgattaatttaatttcttgttCCAAGGTTAGGACTTATCAAATTGTAAAGGTTTTTACACTTTCGACAGATTTCACCATGCCAGTGAGCTTATGGTACCATCTATCAGGCTCATGTAATGTTGACAGGAGAGAAGAGTGTGTATAGGTAGATCAAAATGGTCTTCAACTCTGTATACTCAAATAAAATAAGTTCTCCTGTTATGGTTACTGAAA

Function

symbol description
timm23a Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Predicted to be integral component of mitochondrial inner membrane. Orthologous to several human genes including TIMM23 (translocase of inner mitochondrial membrane 23).
timm23 Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrial inner membrane and mitochondrial intermembrane space. Is integral component of mitochondrial inner membrane. Part of TIM23 mitochondrial import inner membrane translocase complex.

NR:

description
mitochondrial import inner membrane translocase subunit Tim23

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0071806 protein transmembrane transport biological_process
GO:0007275 multicellular organism development biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG:

id description
K17794 TIM23; mitochondrial import inner membrane translocase subunit TIM23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914571.2 True 1443 mRNA 0.44 7 14330419 14334549

Neighbor

gene id symbol gene type direction distance location
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding upstream 58895 14268676 ~ 14271524 (+)
tbcc tbcc coding upstream 63825 14265346 ~ 14266594 (+)
si:dkey-21c1.4 LOC108273792 coding upstream 76764 14250465 ~ 14253655 (+)
tepsin tepsin,LOC105892758 coding upstream 84270 14237392 ~ 14246149 (+)
slc38a10 slc38a10 coding upstream 97132 14208899 ~ 14233287 (+)
syt15 LOC108273430 coding downstream 15284 14349833 ~ 14354606 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding downstream 35161 14369710 ~ 14391752 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding downstream 60165 14394714 ~ 14445832 (+)
hexdc hexdc coding downstream 205951 14540500 ~ 14546876 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding downstream 213399 14547948 ~ 14558925 (+)
G196312 NA non-coding upstream 3059 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 42593 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 66033 14264176 ~ 14264386 (+)
G196294 NA non-coding upstream 138506 14190839 ~ 14191913 (+)
G196291 NA non-coding upstream 156646 14173290 ~ 14173773 (+)
G196315 NA non-coding downstream 3414 14337963 ~ 14338270 (+)
G196360 NA non-coding downstream 189356 14523905 ~ 14526083 (+)
G196378 NA non-coding downstream 243357 14577906 ~ 14578458 (+)
G196386 NA non-coding downstream 263229 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 270754 14605303 ~ 14614657 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 6138 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 296276 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 771334 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1308424 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1856436 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2521140 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3211244 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3820596 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4107337 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4471528 18806077 ~ 18812262 (+)

Expression


Co-expression Network