rfng (rfng)


Basic Information

Item Value
gene id rfng
gene name rfng
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5422799 ~ 5434479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914576.2
AGAGAGCTGTCGTCCTACATTACCGCTACGATCTAGTAAAGGCGCAGAGAGAACTTGTGACTGCGCTACACGACGCGGAGGGCATTTAACACAGGCTGGAGGATGAATGCCGGACTTTGTGTAGCTGCTGAGCGCTTTATTCGGTGCTGTGTGAATTGAAGCAGAAGGTATAAGTTTGTCACAGCTGCTTGGTGAAGACAAGAACAAAAACTTTACTGTTTTAAGTCgatgtttaatatataaaaaaaaaaagtttctgttaGGGTGTGATTTCCTTCACTTCTCCTCGTCAggctttgtttttaattttttttgctaaagtCGAGAGGATGAAGACAGATGATGTGAGAAAGAAAACTGCTACTACACACATGCTGGTTTGCGACTGCAGCTCGTTACACTGAAGATGGACACAGGAGAGGAGAGGTGGCCGAGCCCAGGTGGCTGAGCTGGCACTGAGCTCAGGAAGAATGCATTTGTCTCCGGTTGGCACAAACAGACGTTGCTTCCTGGCCTCTTCGGCCCTCTGTGCCATCGTGCTGCTGCTGATCCCAACCCTCCAAACGCCACAGCGGCAGGGCGAGCTGCCCCGACCTCTGCCCCAAACCAGGCCTGCCAGAGGACAAAACACCACTGGCTACAAAGGTGCTAGTAAGGCTAAGCATGGCAGAGTCATTGGGCTACCCTTTCCTAGTGACAAATCCCAAAGGGACTCTGTAGGTGCTGACTTCCTCAGCTCACACTCCAAGGAGCCTCTGGGActgaaagacatttttattgcaGTCAAAACCACCAGGAAGTACCACAAATCACGCCTGGAGCTTCTTTTTCAGACCTGGGTGTCAGAAGCCAAGGTGCAGACGTTTATCTTCACGGATGGTGAGGATAAGGAGCTGAAGCAGAAAGCAGGAGGCAATGTCATCAACACCAACTGCTCAGCTGCTCACACACGACAGGCGCTGTGCTGCAAGATGTCTGTGGAGTACGACAAGTTCATTGAATCACAGAAAAAATGGTTCTGTCACGTGGATGACGATAATTATGTCATCCTGCCGAGTTTGCTGCAGCTGCTCTCATCCTATTCCCACACGCAGGATGTGTACCTGGGCCGGCCCAGTCTCGATCACCCTATAGAGGCTCCTGAGAGGGTCAGGAGTGATGGATCGACGTCTGTCAAGTTCTGGTTTGCTACTGGAGGTGCTGGCTTCTGTATCAGTCGAGGCCTGGCACTCAAGATGAGTCCATGGGCAAGTCTGGGGAACTTCATCACTACAGCAGAGAAGATCCGTCTCCCGGATGACTGTACGATCGGTTACATCATCGAGGCGCTGCTGGAGGTTCCTCTGATACACACCAACCTCTTCCACTCACATCTGGAGAACCTGCAGAGGATGCGTGCGGCGGACGTCCTCAAACAGGTCACTCTCAGCTATGGTGGTTTTGAGAACAGGAGGAATGTGATACCTATTGCCGGAGCATTCTCCTTGACAGAGGACCCTTCACGGTTTAAGACTGTTCACTGCTTGCTTTATCCTGAGACTGAATGGTGTCTCCGCGACAGTCATCGCTGACCTCAACGCGCTCTTCTGGGGATAAAGCAAATATCTCGTATCTTGTCTGAACTCTCAATCTCAAATGGCTATAATCGTGCACTAATATAACTGACTAGCAGGCTGATTACCATGTCAATTTagcactgctgcattctgtACAGACGTCAATGAagtttgttgaatttttttttttttttaaaatagattaacAGGATAATTTATTTTGATGTCCCAAAGTCTGGTCTGAAGACTATGAGAAATAGCaaaagattatattatatttcccCCAAGCCTATCTTcgatcattttttgttttgttgatcttgttacattttttttttttttttttaaataaaggccCTCAAGTACATTTCAGCTCAAGGCTTTAAAAACGCTGAACTGAGCTGTTCTAGTAGGCATGTCATGCAGGAGTAAATATCAGTTTAATCTGTTTGGGGAGTCAGGTTTCACCTCCAGATAGACTCCTAAACAAAAATAGGAGAAGTCATGAGGACATACATTTGAATAAGGTTTCAGTCCGTTACAGTTGCAGTTTAGGCATGAATTCAGTCTAGGAGCTCCTGGAATCCTGGAATTTAAAGCGAAGGATATCTAATGTAGATTTTAATGTGATGAGAACGCATGAATGAATGGAGGCCTTGCTTTGCAAGGTTAAGTCAGTGTATGGATTCATACGCATCAGCTGACTAAtgaaaaaactgtaattaaagtaaaaaaagaaaaaaagtttttagaaATATTCTCAGCTCTACTGTGCATTATAATTGTGCTCCACTAAAAGATGCCTTAACACATTTCAAAAAGCTGccaaaatatttgtgatttttttttttttttaaatcctatgATGtctctgctcatttatgcacaAACATGGCTTTTCACTGCAGGTCAGTGATTCATGTTAACTTGCCAAAAAACAGACTGAGGTATTACTTTCCTAGTTAGTgatgatgaaaatgttattgaCGAGTGAACAGAAGAGGATTAAGCAATGCCAAGCTGCTGCCAAGTACCATTGCTATTTGACTCTTATCCTGTCCTTCTTTTCTCCTGCAAATAAaccatgttgttgatttttt
>XM_026914578.2
AGAGAGCTGTCGTCCTACATTACCGCTACGATCTAGTAAAGGCGCAGAGAGAACTTGTGACTGCGCTACACGACGCGGAGGGCATTTAACACAGGCTGGAGGATGAATGCCGGACTTTGTGTAGCTGCTGAGCGCTTTATTCGGTGCTGTGTGAATTGAAGCAGAAGtCGAGAGGATGAAGACAGATGATGTGAGAAAGAAAACTGCTACTACACACATGCTGGTTTGCGACTGCAGCTCGTTACACTGAAGATGGACACAGGAGAGGAGAGGTGGCCGAGCCCAGGTGGCTGAGCTGGCACTGAGCTCAGGAAGAATGCATTTGTCTCCGGTTGGCACAAACAGACGTTGCTTCCTGGCCTCTTCGGCCCTCTGTGCCATCGTGCTGCTGCTGATCCCAACCCTCCAAACGCCACAGCGGCAGGGCGAGCTGCCCCGACCTCTGCCCCAAACCAGGCCTGCCAGAGGACAAAACACCACTGGCTACAAAGGTGCTAGTAAGGCTAAGCATGGCAGAGTCATTGGGCTACCCTTTCCTAGTGACAAATCCCAAAGGGACTCTGTAGGTGCTGACTTCCTCAGCTCACACTCCAAGGAGCCTCTGGGActgaaagacatttttattgcaGTCAAAACCACCAGGAAGTACCACAAATCACGCCTGGAGCTTCTTTTTCAGACCTGGGTGTCAGAAGCCAAGGTGCAGACGTTTATCTTCACGGATGGTGAGGATAAGGAGCTGAAGCAGAAAGCAGGAGGCAATGTCATCAACACCAACTGCTCAGCTGCTCACACACGACAGGCGCTGTGCTGCAAGATGTCTGTGGAGTACGACAAGTTCATTGAATCACAGAAAAAATGGTTCTGTCACGTGGATGACGATAATTATGTCATCCTGCCGAGTTTGCTGCAGCTGCTCTCATCCTATTCCCACACGCAGGATGTGTACCTGGGCCGGCCCAGTCTCGATCACCCTATAGAGGCTCCTGAGAGGGTCAGGAGTGATGGATCGACGTCTGTCAAGTTCTGGTTTGCTACTGGAGGTGCTGGCTTCTGTATCAGTCGAGGCCTGGCACTCAAGATGAGTCCATGGGCAAGTCTGGGGAACTTCATCACTACAGCAGAGAAGATCCGTCTCCCGGATGACTGTACGATCGGTTACATCATCGAGGCGCTGCTGGAGGTTCCTCTGATACACACCAACCTCTTCCACTCACATCTGGAGAACCTGCAGAGGATGCGTGCGGCGGACGTCCTCAAACAGGTCACTCTCAGCTATGGTGGTTTTGAGAACAGGAGGAATGTGATACCTATTGCCGGAGCATTCTCCTTGACAGAGGACCCTTCACGGTTTAAGACTGTTCACTGCTTGCTTTATCCTGAGACTGAATGGTGTCTCCGCGACAGTCATCGCTGACCTCAACGCGCTCTTCTGGGGATAAAGCAAATATCTCGTATCTTGTCTGAACTCTCAATCTCAAATGGCTATAATCGTGCACTAATATAACTGACTAGCAGGCTGATTACCATGTCAATTTagcactgctgcattctgtACAGACGTCAATGAagtttgttgaatttttttttttttttaaaatagattaacAGGATAATTTATTTTGATGTCCCAAAGTCTGGTCTGAAGACTATGAGAAATAGCaaaagattatattatatttcccCCAAGCCTATCTTcgatcattttttgttttgttgatcttgttacattttttttttttttttttaaataaaggccCTCAAGTACATTTCAGCTCAAGGCTTTAAAAACGCTGAACTGAGCTGTTCTAGTAGGCATGTCATGCAGGAGTAAATATCAGTTTAATCTGTTTGGGGAGTCAGGTTTCACCTCCAGATAGACTCCTAAACAAAAATAGGAGAAGTCATGAGGACATACATTTGAATAAGGTTTCAGTCCGTTACAGTTGCAGTTTAGGCATGAATTCAGTCTAGGAGCTCCTGGAATCCTGGAATTTAAAGCGAAGGATATCTAATGTAGATTTTAATGTGATGAGAACGCATGAATGAATGGAGGCCTTGCTTTGCAAGGTTAAGTCAGTGTATGGATTCATACGCATCAGCTGACTAAtgaaaaaactgtaattaaagtaaaaaaagaaaaaaagtttttagaaATATTCTCAGCTCTACTGTGCATTATAATTGTGCTCCACTAAAAGATGCCTTAACACATTTCAAAAAGCTGccaaaatatttgtgatttttttttttttttaaatcctatgATGtctctgctcatttatgcacaAACATGGCTTTTCACTGCAGGTCAGTGATTCATGTTAACTTGCCAAAAAACAGACTGAGGTATTACTTTCCTAGTTAGTgatgatgaaaatgttattgaCGAGTGAACAGAAGAGGATTAAGCAATGCCAAGCTGCTGCCAAGTACCATTGCTATTTGACTCTTATCCTGTCCTTCTTTTCTCCTGCAAATAAaccatgttgttgatttttt

Function

symbol description
rfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within brain segmentation; fourth ventricle development; and rhombomere boundary formation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in hindbrain. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

NR:

description
beta-1,3-N-acetylglucosaminyltransferase radical fringe

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0035284 brain segmentation biological_process
GO:0021592 fourth ventricle development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914576.2 True 2656 mRNA 0.44 9 5422799 5434479
XM_026914578.2 False 2502 mRNA 0.45 10 5422799 5434479

Neighbor

gene id symbol gene type direction distance location
col1a1b LOC108273947,LOC107708989,LOC107693674 coding upstream 17993 5383011 ~ 5404806 (+)
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 138649 5267793 ~ 5284150 (+)
tanc2b tanc2b,LOC108274047,LOC107562025,LOC107708983 coding upstream 172287 5077518 ~ 5250512 (+)
cntd1 cntd1 coding upstream 352576 5063595 ~ 5070223 (+)
wnk4a wnk4 coding upstream 363361 5010587 ~ 5059438 (+)
dcxr dcxr coding downstream 1780 5436259 ~ 5443878 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding downstream 29726 5464205 ~ 5470108 (+)
nif3l1 nif3l1 coding downstream 42852 5477331 ~ 5484677 (+)
tbx6 tbx6 coding downstream 60427 5494906 ~ 5499745 (+)
LOC113527309 LOC108274209,LOC108273638 coding downstream 191912 5626391 ~ 5665967 (+)
G191273 NA non-coding upstream 39990 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 56441 5366136 ~ 5366358 (+)
G191266 NA non-coding upstream 59296 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 113425 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 140156 5269247 ~ 5282643 (+)
G191310 NA non-coding downstream 78212 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 162243 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 179928 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 236535 5671014 ~ 5671252 (+)
G191387 NA non-coding downstream 237663 5672142 ~ 5672495 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 82236 5330042 ~ 5340563 (+)
gngt2b NA other upstream 117890 5303077 ~ 5304909 (+)
G190865 NA other upstream 583430 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 826770 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1492356 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 295675 5730154 ~ 5740905 (+)
G191581 NA other downstream 535264 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1290842 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1388261 6822740 ~ 6836383 (+)
tfam tfam other downstream 1994066 7428545 ~ 7436372 (+)

Expression


Co-expression Network