prr12a (LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018)


Basic Information

Item Value
gene id prr12a
gene name LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5885505 ~ 5903485 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914580.2
ggaggagggagagtaGGGGGAGAGGAGCAGCACGGCCGCCTTCCAATATGGCGTCTTTCGAGGGGGGAAAATGACTAATATTATGAAAAAAGCAAGGAGGCCTCGGTCTTGACGTCTAACCGAAACCGGTCCTCTTCGATTcatggtgtttatttttttttggtaacgaAATAacgttaaaaaaagacaaagaaacaaagcCGCAGGAGGAGAGGAGCCGTGGCGGAGCCGTTTGTGGAAACTGAGCGGCAAACCGTCTTATTTTGATGCGTCGACAGAGCTAGCTTAGCTCGCGCTCTGCTATAGCGTTAGCTCACGGGCTAATCGTGTGTTTGGGTGTGAAAACAGCGCGCGGGCGTTTCGTTGTGAGCCGCTCACGCGCACGGGGTACTTGTAGGCTGTAGGGTAAGTTTGTGGGGGGTTTTTTTAGGGGGGAGAAATGTAGCGTGTGCGTAGCAGTCGATGCtgctcctccattttttttattccaataaAGCAGCCCGAGTGAAGAAAGGGGAGGAGAGACGAGGGGAAAGGACGTGTACGGTCACACGCGCGTGCATCAGTGCGTCCTCGGGAAAACCGGGGGTGCGTTTTTCAATCGTTACTTCGGTGTATCGCGGGAATGGCATTAATTAAGCAGATTTTGAAAGCGAAAAGGAAGTGagctatccatccatccatccaaccatccgtGTCAGAAATGGACAGGAATTACCCGGGTGCAGGTTTCGGGGATTTGGGCGCAGGAGCCGGATGGAGCTACGAGCGATCGGCTAAAGCAAGtttggTGTATGGTAGCTCCAGATCTTCCCATCCAGAGTCTGAACTCCTCCACAGGCAAGCCTATGCCACTCCCCATCCCCTACAAGGTTATGCAACCAATCACCATCCAGGCAGCTCTGGACAGGGTGGGGCGTGGGGTGCAGCTGGGAGGAGTCTAGGCTTGTCTGGGCTTTTTGATGCTGGGCTTCACCATGCGAGTCCCTCAGGCCCAGACCCTTCTGTTATGAACTTGATCTCAGCTCTGGAGTCCAGAGGACCACAGCCACCACCTTCtgcttcttctcttctctcccaGTTCCGCACTCCGTCGTGGCAGACTGCAATGCACACACCTGCCCCTGCAGAGCTTTTCATCTCTGGTGCCCTTCCTGGTTCTGGGTCATTCCCATCATCCTCTGCCTTATCAGCCTACCAGCACCCAGCTTCATTTTCTGGACGCTCTTTTCCTGGGGTGACCCCCTCACTCTCTTTACAGGACACTCCTACATTCAGCCCCACCTCAAATGGCCTCTTGTCTCCCCATGATCCTTTGCTGCACATTAAGACGCCCTCTCAGTCAAGTCTGGGCTTTGATCGTCTGTTGTCATCTCAGGGTGCTGCTGCAGCCTACCGTGGGAGCCATGATCCTAGTGGTGGTAGTGGTGTTACTTCTGCTCAGGCATCCTCAGCAGCTTCAGCTTCTGCACGTCATCTGCAGTCTCACCAGTTTAACCTGCTGTCCTCACAGCTTCAGGACCAGTCCTCACAATTATATAGTGCATCGGTGTTCTCATCTGCTCCAGCTCCACCTCAGCCAGCCTCCCAGGAGCGGACCGTACCACGACAAGACAGTGTCATTAAGCACTACCAGCGTCCCTCGCCAGCACAAGCTCCCTCCTCCACACCTCATCCCCTCCAGCATTACCTCAGTTGTGGAGTGTCTGGGTATCAGCAGGCCCCTCATCCCCGTCATGCTGGTCTCTCCTGCAGTCCATTGGGAGAGCACAGCCCTTCCTCTGACCATAAGCCTTCCCCCAGGACAGAGCAGTACCGACCCATTATCCAGCCTTCTTATGGGTCCTCCTCATCGTCATCCTCTGGTGGGCCTGGGAAGGCAGCAAAAAGCAGTTCCAGTAGTGGTTACTCTTCCTCTGGCTCTGGGTCGTCCTCCAGAACTCCCCATACACCACCTTCTGCATCCTCTGcttcatcatcttcctcatcatcttcttcctcttcagcATCTGCCAGTGCAAGGCAGTCTAACTCCATTCCAAGCTCTACATCTGCGTCTGCATCCTCTCGGCAGCAGCCACCAACCCAGTCTGTGCCTCCTCCACAAACACATTCCCAGCCTGCTCCCAGCACCAACTCCTCTCAACAGACACTTCCCAAAGCATGTCTCTCAGGCTATGGCTCTCCAGTGGCTCCAGTTAAGTCATCTAATAGTCTGACAGGCCAGACCCCTCCCCAACAGCAGCCTCAGTCTTTCTCTCCCAGCCAGCCTCCATCACACTTATCTCAGTCATATGCGGGGTTCAGTTCCCCACAAACACATGATCTCCCTTCAGCCAGGACCTCTGGAGTAGCAAAAGGATATGGGAATCTGGGAAGCCAGTCATTTTCATCAGAATCAGTATATGGGACAGATTCAGGTTATGGCTCCCTGCCTCCATCACTGGGGGGAGCTGGAAGCCCCTCCATGGGCTATGCTGCCTCAGGACACTCTCCTGCACTCTTACGTTCAGGGGCAAGTGGGGGAACAGCTGGTGGAAGCAGCAATGGAGGAAGTAACAGTACAGGAGGTGGAAATAATGTCGCTGGCGGAGGAGGGTCTTACCATATCCCTGATTCCAGCCCATCTCCATCTGGCAACTCTGGAATCATTCGCCCAGGTCTACATTCTCCTGCGCCTTCACGACCTGCTCAGTCACCTGTTGGAACAGGATCCAACAAATACTTGTCATCtgttctctctccttccttcttaCCCTCCCCACAAGGCTACCCAGACACCCGAGGACCTCGATCACAATCGTACCATCCCTCtgcacctcccaaaaacaagtCTGATACAAGCCTGCTTGGTGTGACAGAGTCTCGACCGCAACAGgatgatgacgacgacgatTTCCTCATCCAACATCTACTTCAGGCTCAGAGCCCTACTCCTCAAGCATCCCATCATCATCCCCCTCAAAGCCATCATTCCTCACAGTCTACACAACAACCACCAGTACTTCCAACCCAAGATGGAAGCAAGGGTTTATCCTATGAGATGGGCAAGAGCTCAGAGGAGCGATATCATCTTCAAAGTGTTATTCGAACTCATAGTGCCACTTCAAATGCTGCAGTGTCTGGAACAGGGAATGGAGCAGGCCTGGACAGTCAGTtggaaatgtctttaaaaaagcagcagcatcagcagcaaCATCAGACACAACatcaacagcagcaacagcacaaacatcaacaacagcagcagaagaaCAGCAGATCTGTCACAGATGGAGGAGGACGAGGGAACCCAGAACAAACTCATTCCCATTCACATCATCACCATGACTCAATGGGCTCAGTGGTCCACTATGGTCGGGGTGATCCTTATTCCCAGCATTCTATTTCGCAGCATCCATCCTCTCACCAtcaacacactccacacacacctaCGCATTCTCACTTGCACTCTCATCCCCATATGGATCTTCAGAAAAAGCCCCAAGAATCTGCAGATATGGCCTACATTCGCAAGACACCTGATCTGCAGCAGCACCACCACCAACAGCAATCAGGACATCATCAGTCTCATCAGCAACAacaccaacagcagcagcaacaacagcatcAGTCTCAATCTCAAACGTTAATGGAGTCTCCAACAGATCAGTCCCGTCAGCCTCCTCATTTGTTACAGTCGGTGCTCTCCCACACAACCCGCAGCAAAATAGACACTCAGCAACAGCAACACCCTGCTAGCCAGCAGGCTTTAATGGAAGCAGCAGGtggtgttacagcagcagaaacCCATTCCCAGCCTCAAGCATCTCAACTACAACTTCAACTCCAGACCCAAGCTTTGGAAGCTGCTAGTCACTATAGCCATGGttctcagcagcagcaggaccAGAACCATCCAAAATCTACCACAGTGTCTTCTCTGGACATGCTGGAGCGCTCCCTTTCTCGAACCTCAAGTCAGGAAGGAGGAATGGTGGATGATAGAGCAGGAAATGAGGGAGGCAGAGGAAATTCTGGAGCTGGAACTGGAGGAAATGTTGAGAGACACAGATCCCAGGAGCAACAGAGACTTTCATCTCATCATCCTTCACAACACCATCCCTCTGAGTTACATTCGTATCTTTCTGAGCCTGACTTGGGCTTATCTACCCCCTCACATGGGCATCACCTTTCCCATCACCACCACCAATCGCAGCAACCCCCTCAAGCTCAACACCCAaactcccaccaccatgctcaCCCTCAGCACCAAACTCAACAGAGCCATCACCACCTTGCTTCTCAATCAACCTCTGCAACTGCACAGCAGCAAGAGCAGTCTCACTCTTCCCATTCCTCTCAGCTTCCTCAAGCTCAGCTTGACCAGCAGCATCAAGGAGACCATCACTTTGACTCTAGGGGCTCAGCAGTGAAGTCAAATACAAATCAGAATCAGTCCCATCAGAACCAGAGGTTTGTTCCGTTAACATCTATTTGTTTCCCAGACTCGCTCCTTCCAGATGAAGAGCGTTCTTTCTTTCCTGGCATGGAGGACATGTTCTGCCCCGATGAGTTCAAGACAAGCTGCTCTGGGGGAACAGGGCAGGGTCAAGATGGAGTTTCTCAAGCCCAGACAGGACAAGAAGGTATGGAGGGCATAAAATCAACTGCAGAAGGTGGAGGGGATGATACAGGTGCAAGCTATGACATGCTTGGTCACCCTGGCGATCAAGATTATGGGCAGTATTGCCACGATCTTGCAGAGCCTGACAATGGAACCATGCACCTTGACCTTGACTCCTTGAAGACGCATGAGCTCCCATCAACAGTCAATACAGAGCAGCTTGGACTGATCCAGTCTCAGCCAACTAGCCTTGGAATTGGAAGTGGTCCAAATGTCGGGGAGGGATCTGGTGCTAAGATGGTAAGTTCTGGAGGTTCTGGTTCTGGATCAGGTGGACTCACTTCTCCAATCTTCTGCTCATCTCGACCCAAAAAGCTCCTGAAGTCAAGTTCTTTCCACTTGCTGAAGGAGAGACCTGATCCTAATTCCCTTCCCAAAAAGAGCTATGCACAAGAGTATGAAtttgaggatgatgaagataaGGCTGATGTTCCTGCTGACATTCGACTCAATAGCCGAAGACTTCCTGATTTGATTCCTGACCTTGTATCCAGCTGTCGGAAATCTGGTGGTGGAACTATGAGTCCCCTAATGGGTGACTTGGATTTTGGATATCCCTCTCTTGGTCCACCTCCACAATTACTTCCCCACGATGGAccaaaaaagagaggcaggaAGCCCACCAAGCCCAAACGGGAAGGTCCCCCAAGGCCTCGTGGCCGCCCACGCATACGCCCTTTGCCTGAGCCCCACCACTCCAGGGCCATGATGGGAGAATGTGGAACAGGTTATATTCCTGAGAGAGGCAGGGGTAGAGGTagaggcagaggcagaggcAGGCGAGATGACTCTATGATGGACCACAAAGATCAGAGTCAGTTGTATCAACAACACATGCAGCAACAGCAAATGCATCACCAGccacaacagcagcaacagcaccAAGAGCCAATCAAACCTATCAAGATCAAGCTTCCTATTGGCACCATGTCATCTTCTGATGCACTCTTGCGGACAGATTCTTTGTCTGGTACTGATCCAGCCCTCTCAGATGGTTCTGTTGGCTCTGCCCCTTCTTTGGGTCTGAGTCCAGGGACACCAGGAGTGCCTGAAATGAACAGACCTATAGACAAGAACAAGGCCAAAACTCAAGATATGGAAGAGAAAGATTCTGAGAAGACTGGCTTTGTGGCTTCTTTTTTGGATTTTCTAAAATCTGGGAAAAGGCCAGGGAGCAGCTCTGGGAATGGTGATTCATCTCCAGGAAAAAGCGGAGGTATCCATCCCATATCTCCTcaaccaccacctccaccagcacCTACAGCATCGTCTGGTTATGGGGATAGTGAAGGCGATGGAGGGTTGTCTTTGGGTGGTTGCCCAAGTCCTTGCAAGCGCTTGGATGAAGAGCTGAAGAGGAATCTGGAAACACTTCCGTCTTTTTCCTCAGATGAAGAAGACTCTGTGGGGAAAAACCAGGACCTCCAAAAGAGTATCTCCTCAGCCATCTCTGCTCTATATGACACTCCACAGCTAAGCACCTCTTCAATGCagcctccctctctccctccacctcctcctccaatTCCTTCTACACCACTGACACCAACACAACAGCCACCTTCCCTTAGTCCACAAACCCcaacacatatgcacacacagtcttcttcacatacacatgcacagtcTATTGAATCTGCAATATTGTCAAGAGATGAGCAAGGTGATGAGAttgaggaggaaaaaatgaaGGATGAAGACGAAGAAGAGGAGCAAGACAAAAGAGTAGAAGAGAAAGTCCCAGAAATGGAGTTGCTGAGTGTTCCAAAAGTAGGAGACTCACCTAAAGAAGCTTCTCAGGCAGCAGCTCCCCATTCGCTTCCACCTCTCTTTCCATCATCCCCTGCATCTTCATCTTCACCCTCTCCACCACCTCTTCctccactctctctcccctcaccCCTTCCTGAGCTGGAGGACAACCCATCTCCACCACAGAAACCTCTAGTTCAGCAGTCTTCACCTCCAGCCAGCCCTCTTGCCCCCTCCTTACCTGTCCTCTCTCCTCCGCATCCCCTGCCAGTAGCCTCTCCTCCACCCTCTGAGACGCCCACACCCCCAAGCCCCCCTCGACCTCAGCAGCTTGCTCCAGCTCCCCCATCCCCAGAAGAGCCCCCAGCACCTCAAATCCTGCCATTACACCTGGCGCAGAAACAGAGCGGTGCTGCCATTGCAGGAGAGACGGACGAGGATGAGAGTGAAAGTGGAGGAGAGGGTATCTTTAGAGAAAGGGATGAATTTGTGGTACGGATAGAAGACATCAAAACTCTGAAGCTGGCCCTGCAGACAGGTCGGGAGCCTCCGCCCATCTGGCGTGTACAGAAAGCTCTGCTTCAGAAGTTTGCACCAGAAATTaaagatggacagagacagTTCTGTGCCACTAGCAATTATCTTGGTTACTTTGGTGATGCTAAAAAACGGTACCAGCGGTTATATGTGAAATTCCTGGAGAATGTGAATAAGAAGGACTATGTACGAGTTTGCTCTCGTAAACCCTGGCACAGGCCGTCTGTGACACTCAGACGGCAGTCACAGTCTCACCCAGTCCCAAAGATGACCCCACCTCCCAACAATCAGACATTGCCTCGCGTTGTGAGAGATGAGAAAGACAAAGACCGGGAAAAGGTGAAAGAGAAGGAGCAGCGTGACAGCAGAGAGAAGAACAACATCAAGGCGAAAGAGCAGCAAGAGAAGGAACGGGTGACGAAAATTAAGGAgcgagaagaaaagaaagacaaagagaagaaaatgcCACCACCTCCTGCACCCCAGAAGGCAGAGAAACGAGCAGCTGTGACAGAACAAgggagaaaggaggagaaaaggGCAGCAGGAGTGGAGCGGAAGATGGAACGGCCCACAAAACAGCAGCCAGTGAAAGTAAAGGCCGAGCCTCCACCTAAGAAGAGAAGGAAGTGGCTGAAAGAAGTGCCCTCGTCGTCCGATTCCGATTCTTCCGCCAGCGATGATGAGATTTCTGTGAGAGCAGGCCTGAATACTCGAGCTATGCGAGAGATGTACCGAAGCTATGTAGAGATGCTGGTCAGTACAGCTCTGGACCCTGACATGATACAGGCACTGGAGGACACAGAGGATGAACTGTACCTGCCTCCAATGCGGAAGATTGACAGCATTCTCAGTGAGCAGAAGAGGAAGCTTCTGAAGCGAGTCAGCATGAACCCCCAACACCAGGAGGCCCTAAACACTTTTCCTCAGATAACAGCAGAGCCCTTGGACTCAGGAGCTGTGAGGGTCAAACTTGGCGGGGAGTGCTATAACCGAAAAACCCTGAACCGTGTCAAGAAGAGTATTCCTAAACCACAGGACATCAAGCTGTCAACAGAGACATGTCGACTCTACAGCTTTTACCATTCTCTGCATCATTACAAATACCACACCTTCCTAATCTGCAAAAAAGAGaccaaCACTATAGAACAGGCGTCAGAAGATCCTGGGCAAGAGGAGGTTGTTCAGCAGTGCATGGCCAATCAGAGCTGGCTGGACACACTCTTCAACGCCTTCTTAGAACTGATGACCCTCAGTGCCAAAGCCTGACAGGATGAAAGCGTTCGAGAGGGGGGCCAGTGAGAGACAAAGGACAAGCCCTAAGGATGCAGCAGGCTCTTGTGGAACAAAGGACATGGATTTGTTTTCACATAGCCCCCCAGTCCTCTCCTATTGTTTTTCTTGAGGCGTTTCTTAAGACGATTGTGATACATGACCAGGCAATAGAGCCACCTCTCAGCAGGTAGCTTTTGGCAAGTAAACTAATCAGCTCTTCGTTACTGAAGTCAATGAGAGCATAGTTTTTGTGCTAAACGGATTAAAGGCAAAACGGAgaacatatttacatacatagaCGTGACCAATTTTTTTGGGGAGTGGGCAGATGCGTCGATGGATTGATCCCTTCGCTGCGATGAATTTGCTAACTGACAGGTGAACAGAAAAACTGAAGTTGACTGAAGTAGAATACTGTACAAATTTTACGCGTTGATTTGGAAAAACTTTGAACATTTGGAATTTAAAGACGTTGCAAGGAGGAAGTCTGTTACAATTTGAATTTTacacagattattttttaagaCTACAAActtttattctgcattttttttccttgagtGGAGGAGTGACGGTTGTGCTTTATAAACGAGTGAAGAGTGCCGTGCAAAAGGAAAActgacaatgaaaaaaaatgctaaacagtGTAACACTTAATGCTACATGAGTGAAACAAGAGAGCTATACGCgcatttctattatttatataaagacaTTTCTAACAGGAGcttgcacatacagtataaagcaGCAGTGcttcattattcatttcataACATTATGTTCAGATGCCATACGCCAAAAAAACGTGTTGTCAAATTCAGAGCTGTCTTCCTTCAGGCTCATGAAGAGTTGGCGGTAACACATGGCAttgtttttgtctgtaaaagagtaaaagaaagagataaaataTCTTTCAGCTACGCAAAACTATATTATTTCAGTGCATTCTTCAGAAGATGGACATGAAAATAAGAGCTAACTATAGCATTCAATTCCCACTAGGGAAAAATTATGTAttagtaatatttaaataggaccttttttttttggttttgtttcatttttaactgtttgtcCATTGTCTGTATTATGAGTATTATTTTGGAACAATCTAATACTGTGCTTCTTTTGAAAACCAAGCCTTTGTGTAAATACTGTACAGCTCTTCACTCAAAATACAGTTCTTCTGTACATGGACTATTCCTGTAtttgacaaacaaataaaatcaaggAGCGTATAATGTCtcataaaaata

Function

NR:

description
PREDICTED: proline-rich protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914580.2 True 9489 mRNA 0.49 16 5885505 5903485

Neighbor

gene id symbol gene type direction distance location
irf3 LOC108273898 coding downstream 2798 5866941 ~ 5882707 (-)
LOC113527265 LOC108274106,LOC108441156 coding downstream 36074 5817692 ~ 5849431 (-)
LOC113527266 LOC108441168 coding downstream 71033 5807820 ~ 5814472 (-)
zgc:92313 LOC108273548 coding downstream 176216 5692120 ~ 5709289 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding downstream 207544 5674724 ~ 5677961 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding upstream 6949 5910434 ~ 5932525 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding upstream 66251 5969736 ~ 6000168 (-)
zgc:163073 NA coding upstream 103208 6006693 ~ 6011524 (-)
LOC117598564 LOC108273543,LOC108262318 coding upstream 188225 6091710 ~ 6097905 (-)
LOC117598474 LOC108262318,LOC108273543 coding upstream 197596 6101081 ~ 6102526 (-)
G191490 NA non-coding downstream 145306 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 195937 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 215752 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 217659 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 400838 5482620 ~ 5484667 (-)
LOC113527731 NA non-coding upstream 32054 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 315221 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 316327 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 347937 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 356380 6259865 ~ 6261598 (-)
LOC113527291 LOC108274042 other downstream 94235 5768528 ~ 5791270 (-)
G191430 NA other downstream 271551 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 394580 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 822087 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 932646 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 643456 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1496515 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1677865 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1697733 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2944177 8847662 ~ 8857748 (-)

Expression


Co-expression Network