cdk5r1b (cdk5r1,LOC108426451,LOC103047129)


Basic Information

Item Value
gene id cdk5r1b
gene name cdk5r1,LOC108426451,LOC103047129
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12179023 ~ 12185038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914596.2
agagagagagatagcactgcttcatccctccatctcggCATCTCTAAccgacacagagagagagagagagagagagagagggagagagagaggcaaaagCACTAGAGCACATCACAGACTGCATGCCCACACCTCTGGCAAGACTGACGGATTctccttgtttttattttttgttgttgttgttgttgttaacgCCATTTTCTTTTTGGATTCGTTTTTTAAATACGTTATTcgtactttttatttctttattttaaaacgCATTTCTTGGTATGGTTGTTCGAGTCTTCCCTTGATGCGCAGCGTATTACAGGATATACAGAAGCAGCCATTACTGCAGCTCGTGTTTTCTCACACCGTGGAGAGGAACATCGTGCGGGAGTGGAGTAAAAGAATTCTGGAAGAAGGAAAGAGCTCCTTCAGTCATTCTCCACCCAGACACCATTGTTGTCTAGGCTGAGCACCAGTTCATATTTTGATGCTGACCTTACACTAAGCCTGGTGTCTGGGTCTCCATTTTTGGAAGCAGTGAGGCAAGATCCTCAGCTCCAGTACCAGGCATATTCTGTGCATTTGCTGTGAGGACTCTGCACATCCATCTCTGGCATCATGGGAACCGTCCTGTCGCTCTCTCCCAGCTACCGGAAGGCTGCCCTGTTTGAGGATGGTCCAGCCACAGTGGGCCCCTACACGGCTGTTCAAAACAGCAAGAACGCCAAAGACAAGAATTTGAAGCGTCACTCGCTCATCAACGTGTTACCGTGGAAGCGGATAGTAGCTGTCTCGACCAAGAAAAAGGGTTCTAAGAAGGTGCAGCCCAATACGACATACCAGAACAACGTCACTCATCTGAACAATGAGAACTTGAAGAAGTCACAGTCCTGTGCCAACCTCTCCACATTCACCCAGGAGCAGTCAAGCCCATCCAACCAAGGCTCTAAAAGCTCTAACAATGTGGCCTCATCTGTCAAGAAAGCACCCTTGTCCAACTCTAGTGTGGCTCCTGGCACGCCCAAGAGGGTGATCGTTCAGGCCTCAACCAGTGAGCTGCTGCGCTGCCTCGGTGAATTCCTGTGCCGGAGGTGCTACCGGCTCAAGCACCTTTCTCCTACTGACCCAGTGTTATGGCTGCGCAGCGTGGACCGTTCCCTGCTGCTGCAAGGCTGGCAGGACCAAGGTTTCATCACACCAGCTAACGTTGTCTTTGTTTACATGCTCTGTCGAGATGTGGTCTCTTCAGAACTAGCCACAGAACATGAGCTGCAGGCAGTGCTTCTTACCTGTCTCTACTTGTCCTACTCCTACATGGGCAATGAAATCTCCTATCCTCTCAAGCCATTCCTGGTGGAAAGCTCAAAGGAGACCTTCTGGGACCGCTGCCTGTCCATAATCAACCTGATGAGTGCCAAGATGCTGCAGATCAACTCAGACCCACACTACTTCACCCAGGTGTTCGCAGACCTCAAGAACGAGAGCCagaaggaagaggagaggagccGTTTACTCATTGGGCTAGACCGGTGAGGGAACGCTGAAGAGTATAAAGTGGGATCGCACCCTAGTCTGGCATTTTTGAATGGGATTCCAAAAGTTTTAGTAGACAGCAGTCTCTATATTATGAGAATGCATTTAATATGTATGAAATCTATACAAATTTACCCTTTTCAAGGTATGACTGATCATTACTACGTTCAGATGTTGACAAAACTACTGAATTTTAACAATTTGATCTTAAAGTTCCACCAGGTTTGTATATGATGAAGGTTCAGGGCAGATATGCCAGATCTGGGTGCACCCAAGTAGTCTTGtatgattaatatttaaattcacccacaaaaaaagacatcaagaagatcaaaaaacagaaaaacatgacaaagaaaacAGTAGGAATAGGAACATCAATTTAAGTATGAATGTGTAGAAGCCTGACCGGCCACAGAGTACTGGAGATGTGTACTGCCTTTTGTGTAATGGTGTCTTACCAGACTGGTTCGCTGCAGACAGTGAGGACTGAGACTGTGACTACGAGGCAGAGGACATCACACCCACACTGCAGCCACGCTGTTGGATGCtcattaaataacacacactttgGCTTTAGTAGCAGTATGTATAAATATGTCTTGTGATGACAATAAGGAGAAGGGGAGCTCCAGTGATACATATATTTTATCGATGAATTTTGACATTGTGGCAGCACTGCACAGCGGGGTGGAAGGTGGAAGGTGTTAGGCACACCGCTGTAAAAGGCCTACTTTATTTTCATCAATATGGATTTAAGTTCTACTCTGCAGTGCAACTCTGGGGCTCTATCCATTGATttacttgtttcttttttacttgGAAATGTAACCGGATGCATGTGTGCCATGCAATTTTGTATGGTGTTTTGAgggtaaaaatgttttatttatttaattccatTGAATCTTTAGAACCAACTGCATCTGCAATTAGggaatgcctttttttttttaatcaaagtgtAAGTTTATTTAGCTATGCTTGCTACAGTGAGCCATGATTGTACAAAGtatcttttgttgttttgtgtcacATTGTGTCACTGTCTAGTTGGGCAACGATCcatatagacaaaaaaaaagcttaatgtAAATTTTGCAAAACCAGTGCCATACCTTTGATGAAAATCATGTAGGTctaaaaaaatacaccaaaggGGGGCAATCTTTGAAATGGTTCATTAATTCTAAGTAAGAATATCTATTCAGTCTtaatttattgttgtttatttattctcttaGCACATCCATtgtatttaaaagtttattaatgTATTGTATAAATGACTAGTACAATGGCTACTTTCACGTGTAGCATTTAGACGTAGGTGATTTGTGGTAAACCTGGTTACCTTTGGTGGAAATGAAGATTGTGGGTGATGCGTTTTGAAGGATTTAGTTAAGGATATTCCATCTAAGAGCTTCATCCATATCCATTGACAAATCTGAGTATCACCAAGGGTATTCATCTGTGCAACAAGGAGACGCTGTTGGTTTCAGCCTATAAATACCTGAGACCATTCTTCCTCTGCTGAGATGTaccacatttttaataaaacaacaggTAGAAGAGATAATCATTTACAGACAGTCTAGTTCTGGCATTTTATGTCACGTAACATCACCATGGATGATGAACGAACACCTGAGAGAGTGATTGATTCATGCACTCATAAGCCAAATATGAAGGAAATGGTCAAGGTGCGAATGTGTTTGATCCTCGTCCAGAATTTaagaagaattttttaaaaatctgacatGGATCTTTAGGCATGATATCACTGAATGAAACAGTTGATCACAGGCAAATacttaattaatgtaataataataaataatgttatgaATTAGTTCTAAATATGAATAACTGACATTGTCATCacgtcagtttttttttattagggcAGAAAAACCTTGCTGTAATTTTGGAACCTGCAGCTGCATTGTGATATTAGACTGAAACCTCAAAGTTGATCTTTCTATACATCTCAGCAGTAATCAATTACGCATGCTTTCTTTCAGTAGAATATTTCTTTACAGACATAGAAAAAGTGCTACTCATCATATAAGCACACATTGTCACATTTAGCTCTGTACAGTACGTTGTTCCATGTTGGCTATGTTCTCATGATATGATGGCTGAAGGCTGCCTCGAACCACTGAgacctgaagatgaatggatggaaggGGAACTGTATGAATACATGCCCTTGCTGCTGCATTGCTATGTGTGACAGAGGGCATACTGGAATCGAGAGGAGAATGTGAGAGGTGGTTGTTAATGTGCAATGTGTGGATCAGATATTAAAGCCGAATAAGGACCATAAGGCCATAAAGACTTGCACTTTTCTCCAGATATTACTCTGGGAAAATTGAAGGGGCTTTCAAATCATAGGGACTAATACAGGGGAGTTCCCTTCACTGCCTGCTTGCCATCACTTACCACCGATCACAACAACGTGCCATTTTCCCCCCACTTACATCACTGGCTAGTCAGTTgttaaaacttaaaaagaaagaaacgagAGAAAATTACGTCACTTTATTTCAGTATCTTGTCATATTTCTTTGttgaacaaaaaagaaacagtgtttcaaaacaaaaaaaggaaaggctCTCTCAATGACTGCATGTGTGCGTGAGAGTGAGAGATCATTTGTATAGAAGAGTGTGTAAGGTATTTTTTTCCTATGGGGGCTGGGGACAATGTAAGGCAATGCTTTTAAGATGAGAAAACAACATGGACTGGTGGGTGGGCAGGGCACTGAACTGTTACAAGAACAATAGAAAAAGCTGTTGctgtaatagattttttttttcagttcggttctgcttatttttatttatttttgtactgtGATGGAAAAAATGCACTGATCGTTAAAGATGCACAACTGTGTGgctgtcattatttttttctaagtgtATTTCCTTCATTAAACTCTGTATTTATCAGC

Function

symbol description
cdk5r1 Enables protein kinase binding activity and protein serine/threonine kinase activator activity. Involved in positive regulation of signaling receptor activity; protein phosphorylation; and regulation of macromolecule biosynthetic process. Located in nucleoplasm and perinuclear region of cytoplasm. Implicated in Alzheimer's disease. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: cyclin-dependent kinase 5 activator 1

GO:

id name namespace
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016533 protein kinase 5 complex cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914596.2 True 4484 mRNA 0.41 2 12179023 12185038

Neighbor

gene id symbol gene type direction distance location
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding upstream 36280 12141560 ~ 12142743 (+)
cacna1g cacna1g coding upstream 145670 11857394 ~ 12033353 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding upstream 347359 11795917 ~ 11831664 (+)
etv4 etv4,LOC107706904,LOC107552771 coding upstream 394875 11759981 ~ 11784148 (+)
meox1 meox1,LOC107577625 coding upstream 447035 11725403 ~ 11731988 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding downstream 84647 12269685 ~ 12317104 (+)
tbx21 tbx21 coding downstream 163922 12348960 ~ 12360643 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding downstream 193440 12378478 ~ 12383567 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 205755 12390793 ~ 12398133 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding downstream 222315 12407353 ~ 12415790 (+)
G195016 NA non-coding upstream 2904 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 33816 12145001 ~ 12145207 (+)
G194989 NA non-coding upstream 38803 12140012 ~ 12140220 (+)
G194828 NA non-coding upstream 140295 12038503 ~ 12038728 (+)
G194748 NA non-coding upstream 459910 11718897 ~ 11719113 (+)
G195047 NA non-coding downstream 64022 12249060 ~ 12249755 (+)
G195083 NA non-coding downstream 186018 12371056 ~ 12371285 (+)
G195084 NA non-coding downstream 188972 12374010 ~ 12374280 (+)
LOC117598562 NA non-coding downstream 266855 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 365096 12550134 ~ 12550360 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 93664 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 557754 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 892755 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 930810 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1532476 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 287641 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 773897 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1298263 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1828535 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 2102321 14287359 ~ 14324281 (+)

Expression


Co-expression Network