si:ch1073-272o11.3


Basic Information

Item Value
gene id si:ch1073-272o11.3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8514561 ~ 8521374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914607.2
TCTGAGGAGTGTATTACCAACTCGGGGCTGTTCAGTACCGGTACATCTTGCTACCTCAGACTGACGCATCTTTATATACACTCAAggcttctccatcagtaagaGTTCACACATCATTAGACTGGTGATAAACTTGGCACGGATTGCGTCAGAGCATATCTGAGGTACAGAGAGCACGCCACGTTGATCTCCTCCTTCCTGCACtcctgagagagtgagagagggagcgagagagagagagagagagatgcatgcgagagagagagaaagccagCGTCCTGTGTTGAGTGAACATACTCAGAATGCTTACAGACATGATAGCAGAGGAGGAATTCGAGGTTAAAGAGGAAGAACAGTGGTATGACCATCGAGATCTGGAGCATGATCTTCATTTGGCCGCTGAGCTGGGCAAAACCCTCCTGGAGAGGAATCATGAATTGGAGGAAGGTCTCCAGCAGATGTACACCACCAATCAAGAACAGCTACAGGAAATTGAGCATCTATCTAAGCAATTGGAAATGCTCAGGTCAGTGAATGATCAGCATGCTAAAGTCTATGAGCAGCTAGATGCGACTGCACGAGAACTGGAAAAGAGCAACCAAAGACTCGCCCTGGAAAACCGTTCCGCCCAGCTTAAGATCGAGGGGCTTACAGAGACCATAAACGGGCTGCAGGGTCAGGTGGAGGAGCTACAGAGGGAGATTGAGAAGATGACACCAGATCTTCTAGAGCCAGAGAAGCCAGACTTTAGCCAATCAGACAAGAACACACCCAATGAGTACTCTGTATCTGCGAGCACTCCCTCTCCAGAGGCAGATGAGTGGGAAGAGGAAGAGCACACAGCCCTTTTGCACTCAGTGCACTCACTACAGGCCCAGCTGGATTTAGAGCGAACCCTAAGAGAGACTGCTGAACAGGAGGCCGAGGCTCTGGCCCGAGAGATCACTGAGCTGGAGCCACGTGTGACTCTGCTGGAGGGCTATAAGGCTCGTCTGGCTGAGGTAGAGGCTGAAGTTGAGGAACTACGGCAGCTGTTGCGTTCCGCAACAGACTCACGCATGCTTCCAGGCACTCTGTTCTTCCCTGCAGAGGAGGAAGTGAGTGAGATGTGGGAGACAAGGCAAGTGCTGAAGCGCTGCAACAGCGAGAGGGAGCTGCTGGAAGCTGGCAGCAAGGATGAGGAGCTGAGGAATGAAGAACACACTGATGCCTATAGGGGGCATTTAGAGACAGTGAAGAGCCATGGCATATCACTGCTAAATGAGGTGGATGCACAGTACAACGCCTTACAGAGAAAATACAATGCACTCCTGCGCCGCTGTGAAGGTGGTTCACAGTCACAGTGTGACAAAGCTGTGCAGACAGCCACAACCAATCAGCACTCGATCCTAAATCCAGTTAAACACACACGTTCTCAGGACTGTGCTCAGCTGCCTGAGTACAAAACGCTTTTCAATGAGATTTTCACTTACATCCAAAATAGCAAAAAGGACTTAGAGATGAACAGAGCCAAGTCAAGTTAAATGCAGACGAATACTGTGAATTTTCCATGTTCAGCTTCCCAGGACTGTGAGATTTGTCCTCCAAAGGAATTGCCAAATCTCCCAGCAGGCATCAGTAATAATAAGGCAGTGAGGGGACTGTCTGAATAAACTGGAATCGCAATAAGGATATTTATAGCACAGCCAAGCTAGAGCTTCAGATCTCATCTTTTATTGCAGATATAGACCTAACTGAAAACGATTATTTCCCTTTAAGTCTTTATGTGCCGTACATGACAACTTGTGATCTTTTGTGAtcttttttgcatcatttttgctcattattATATGTACTGCTGATGTTTTAATGGTGCTGCTACAAAACGTATATAGAAAGAGTTACACTTTGATATAGAGTTTAAGAAAACCTTTGTCTGGCTTGTACACTTCTCAGAGGTCACAATAGTTCTACCCGAGGCTCAGATATCAGCAACGGTcagtttttgtaaattttgtatGGTCAGGTTTTGTAAATTTATCAGGTTTATGGAAACACAACATATTGAGCACATAgatatcacacacatacacatcttcTTTATCTTCATAGACAATGTGAAACCAGGACAAGAAAACTACCAATTAATAAATCTTAAGCCGTA
>XM_026914608.2
TGAACATCATAGAGCAAGAGGAGAATTTGTGCTCTTAGAAATAGAAGATGCACCACTGAAGcactttgttttaaaataacactcgtttttctgcttttctgagTGAAGATGCTTACAGACATGATAGCAGAGGAGGAATTCGAGGTTAAAGAGGAAGAACAGTGGTATGACCATCGAGATCTGGAGCATGATCTTCATTTGGCCGCTGAGCTGGGCAAAACCCTCCTGGAGAGGAATCATGAATTGGAGGAAGGTCTCCAGCAGATGTACACCACCAATCAAGAACAGCTACAGGAAATTGAGCATCTATCTAAGCAATTGGAAATGCTCAGGTCAGTGAATGATCAGCATGCTAAAGTCTATGAGCAGCTAGATGCGACTGCACGAGAACTGGAAAAGAGCAACCAAAGACTCGCCCTGGAAAACCGTTCCGCCCAGCTTAAGATCGAGGGGCTTACAGAGACCATAAACGGGCTGCAGGGTCAGGTGGAGGAGCTACAGAGGGAGATTGAGAAGATGACACCAGATCTTCTAGAGCCAGAGAAGCCAGACTTTAGCCAATCAGACAAGAACACACCCAATGAGTACTCTGTATCTGCGAGCACTCCCTCTCCAGAGGCAGATGAGTGGGAAGAGGAAGAGCACACAGCCCTTTTGCACTCAGTGCACTCACTACAGGCCCAGCTGGATTTAGAGCGAACCCTAAGAGAGACTGCTGAACAGGAGGCCGAGGCTCTGGCCCGAGAGATCACTGAGCTGGAGCCACGTGTGACTCTGCTGGAGGGCTATAAGGCTCGTCTGGCTGAGGTAGAGGCTGAAGTTGAGGAACTACGGCAGCTGTTGCGTTCCGCAACAGACTCACGCATGCTTCCAGGCACTCTGTTCTTCCCTGCAGAGGAGGAAGTGAGTGAGATGTGGGAGACAAGGCAAGTGCTGAAGCGCTGCAACAGCGAGAGGGAGCTGCTGGAAGCTGGCAGCAAGGATGAGGAGCTGAGGAATGAAGAACACACTGATGCCTATAGGGGGCATTTAGAGACAGTGAAGAGCCATGGCATATCACTGCTAAATGAGGTGGATGCACAGTACAACGCCTTACAGAGAAAATACAATGCACTCCTGCGCCGCTGTGAAGGTGGTTCACAGTCACAGTGTGACAAAGCTGTGCAGACAGCCACAACCAATCAGCACTCGATCCTAAATCCAGTTAAACACACACGTTCTCAGGACTGTGCTCAGCTGCCTGAGTACAAAACGCTTTTCAATGAGATTTTCACTTACATCCAAAATAGCAAAAAGGACTTAGAGATGAACAGAGCCAAGTCAAGTTAAATGCAGACGAATACTGTGAATTTTCCATGTTCAGCTTCCCAGGACTGTGAGATTTGTCCTCCAAAGGAATTGCCAAATCTCCCAGCAGGCATCAGTAATAATAAGGCAGTGAGGGGACTGTCTGAATAAACTGGAATCGCAATAAGGATATTTATAGCACAGCCAAGCTAGAGCTTCAGATCTCATCTTTTATTGCAGATATAGACCTAACTGAAAACGATTATTTCCCTTTAAGTCTTTATGTGCCGTACATGACAACTTGTGATCTTTTGTGAtcttttttgcatcatttttgctcattattATATGTACTGCTGATGTTTTAATGGTGCTGCTACAAAACGTATATAGAAAGAGTTACACTTTGATATAGAGTTTAAGAAAACCTTTGTCTGGCTTGTACACTTCTCAGAGGTCACAATAGTTCTACCCGAGGCTCAGATATCAGCAACGGTcagtttttgtaaattttgtatGGTCAGGTTTTGTAAATTTATCAGGTTTATGGAAACACAACATATTGAGCACATAgatatcacacacatacacatcttcTTTATCTTCATAGACAATGTGAAACCAGGACAAGAAAACTACCAATTAATAAATCTTAAGCCGTA

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914607.2 True 2143 mRNA 0.46 7 8514561 8521374
XM_026914608.2 False 1949 mRNA 0.45 5 8514561 8519798

Neighbor

gene id symbol gene type direction distance location
trnal-uag_3 NA coding downstream 39221 8475259 ~ 8475340 (-)
trnap-agg_9 NA coding downstream 56165 8458327 ~ 8458396 (-)
snu13b snu13b,nh2l1,LOC106589607,LOC105031476,LOC105898651,LOC101154660 coding downstream 64099 8447927 ~ 8450462 (-)
crym crym coding downstream 68882 8440187 ~ 8445679 (-)
LOC113527290 ffar4 coding downstream 212142 8301334 ~ 8302419 (-)
wfikkn2b LOC108274012,LOC108443184 coding upstream 153355 8674729 ~ 8678396 (-)
abcc3 abcc3,LOC106589510,LOC107653990,LOC107742588 coding upstream 171885 8693259 ~ 8746106 (-)
mprip mprip,LOC108273748 coding upstream 337830 8859204 ~ 8898061 (-)
LOC113527765 LOC108273499,LOC107653939,LOC107742606,LOC107556458,LOC108424863,LOC104927391 coding upstream 419538 8940912 ~ 8956325 (-)
rcvrnb rcvrn,rcvrnb,LOC107720397 coding upstream 504651 9026025 ~ 9027306 (-)
G192953 eef2k non-coding downstream 1091 8480420 ~ 8513470 (-)
G192954 NA non-coding downstream 29383 8483608 ~ 8485178 (-)
G192948 NA non-coding downstream 59258 8452197 ~ 8455303 (-)
G192937 NA non-coding downstream 78477 8429304 ~ 8436084 (-)
G192881 sun1 non-coding downstream 130962 8379227 ~ 8383599 (-)
G193138 LOC108273751 non-coding upstream 406607 8927981 ~ 8928648 (-)
G193315 NA non-coding upstream 633068 9154442 ~ 9156287 (-)
G193319 NA non-coding upstream 636817 9158191 ~ 9158569 (-)
G193316 NA non-coding upstream 638060 9159434 ~ 9184089 (-)
G193334 NA non-coding upstream 680618 9201992 ~ 9202672 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 747049 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 918680 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1096183 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1920171 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 2723291 5768528 ~ 5791270 (-)
si:dkey-94l16.4 LOC108273749 other upstream 326288 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 846843 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 994440 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 994698 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1065792 9587166 ~ 9590116 (-)

Expression


Co-expression Network