mtpap (mtpap)


Basic Information

Item Value
gene id mtpap
gene name mtpap
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15457999 ~ 15469154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914624.2
GACTGAAAATTCCCCCTTTGCAGTTGCCGTAGAATGAGAACTGCGCATGCGCGGGTTTCAGCCCAACAATGGCGGCCTGCTTTGGGATGTGTAGGTTACATGTGAAAGGAACAGAAAGGCTTGTTCAGCTGAGCCAAAAATCAGATTTACGAGCTCGGCGAATACTCACCAGATCCACCTTTGCAACTAAAGCACAGACAGTGAAAAAGACGCTACAAGCTGGTGCAGCAGCAGGCAAGGAATCGTTTTCTGCTCTCCAAGAGGAAAGACGAGAACAAGCTGAGAGGTCTGTCCTCATCAGCTGCCCTCCAAACATCAACCAGAAAAAGTTCTTAGACTACATCTCCAAACACGGACacatacagaaccatttcttcTATCAGTCTTATGGTATTTAtgcagtggtggaattctctacAAAGGACAGCATCACTGCACTGAAGGCAAACTGCACCATACCAAGTGTCCAACATGAAGCAGCTGTGCCTTTCAAATCGCGTCTCCTCTCACTGAAATGGACAGGGCAAGGCAGCCAGTCAAATGCCTCAAACACGCTGAAGCTCCAAAAACATTTACCTATTCCTATCAATGAGCTCACTCAACATCTCTCCAAACAAGAGAGTATAGATCAGCAGCTGCAGTGTCTGACCGATCTCTATCAGCTGACTGAGGAAAACATCAGTTTACGCTTGGTCTGTTCGCTGCTCAGAGACATCGCTGCTGCCTatttcccagaatgcatcaTCAGGCCTTTTGGCTCCACTGTGAACAGCTTCGGAAAACTGGGCTGTGACCTCGACATGTTCCTGGATCTAGATGGCATCAGTGGGCAGAACCAGAGGAAGGGCTCTGGTCTGTCTCTCGAGTATCAAGTGAAGCAGGGGACGTCAGAGCGGACGGTCACACAGAGTGTCCTGTCTGTTATCGGGGAGTGTGTGGACCAGTTTGGCCCAGGCTGCGTGGGCGTTCAGAAAATCCTCAATGCTCGCTGCCCCCTCGTCCGATTCGCTCACCAGCCTTCAGGCTTTCAGTGTGACCTCACAGCGAATAACAGGGTGGCAATGAAGAGCTCCGAGTTGCTGTTTGTGTATGGGAAATTGGATGCACGTGTGCGACATCTGGTGTTTGCGGTTCGGTGCTGGGCTCGTGTGCATGGCATCACCAGCAGCATTCCTGGAGCCTGGATCACCAACTTCTCCCTTACAGTCCTCGTGCTGTTCTTCCTCCAGCGCAGGACGCAGCCATTACTGCCCACTCTGGACCAGCTCAGAGACCTGGCAGACCCTTCAGATCAGTGCATTATTGAGGGGAATGACTGCACAATTGTCAGTGACCTGAGCAAGATTAAactacagaaaaacacagatacACTAGAGAAACTGCTGCAGGAGTTCTTTGAGTTTTATGGCAATTTTGCCTTCAGTTCAACTTCCATCAACATAAGGAAGGGAAAAGAGCAGAACAAACCCGAGTCGACCCCTCTGCACATCCAGAACCCCTTCGAAACGGGTCTAAACGTTAGCAAAAACGTGAACACAACACAGCTGGAGCGATTCGTGGCACTGTGTCGTGAGAGCGCCTGGCTCCTTGAGCAAAAGGAGATGCTTAAACGAAGTGCTGGTCAATCAGCAGATGTAATCCCACCTTGGGGACTGGCTGCCCTCCTGTTGCCTTCGGTTGCTCAGTCAGCGGGGGTGAAAGGTCGCAGGAAGAAGAAACATCATCCGGCGAGCGAGAGGATAAAGACTTTGCTGGAGTCACTAAAGAGCAACAGTGGGGGAGCAGGTGCGAAACAGAGCGCTGTTAATGGTCACCACTAGGGGGCAGCATGCTTCTGGACTTTAATGGGGCCTGCCTGGGGATATGAAAGAACTGAGAATGTTTCACAAACTCGGAGCATCTAACCAAGTGGTGATTAGTTCAGCTGAGTTGTGCTGTGGTGAGTTCAGCCTGGAGAATCATCTCCACTGTCTGCCTGTTTTACCGCAGCCCAGCCTGTCTGAACCACAATAACAAAACAACGCAACATCCACAAAAAAACCTACAGTGTTTCCCTCAAGGTATTGTGGGGTATTTTAGGTTCATGTAAACAGGAAGCCGGAGAGCTTGTTGTTCCATTCACTAAGATGGATAGCTGACAGTGGAGTTTCACTCACTGTGTTCAGATTAAAGGGATCATGGCGCTATAGTGAACCAGACAGACAGCATTGTAGTATAAATCCATATGGCGTCTGAGTGAATGTGTGCTCTGTGGTGATGTGGGCTTCATCCTCCAATTTAGTGTACATAAAGCAGAAAGACATCTACCTTTATCCTATATGCATATATCATTAACTCTGTTTCGTATGAGATTAAATTACTTTAACAAAAAGTCTGCTTTGTGTTACTTTGATATTTCAAAAGATTATGGTCTTTAAAGATAAGCCAGAAAAGGTTCTATTGCGTGACGCCACCGAGGAACCATTTTTGGTTTCCTAAAGAATTACGATGGTCGAAAGAACTGAGGAAGCATTTCTCtccataaatgtttacatttttcgtTTGCTTGGTTATTCACTGCTTTGAAGCGCTAAAAAAATGGTTGAAGAATTGTCTACTGAAACATCTTTTGTACCA

Function

symbol description
mtpap Predicted to enable RNA adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to be active in mitochondrion. Is expressed in head; ovary; and testis. Human ortholog(s) of this gene implicated in spastic ataxia 4. Orthologous to human MTPAP (mitochondrial poly(A) polymerase).

NR:

description
poly(A) RNA polymerase, mitochondrial-like

GO: NA

KEGG:

id description
K18060 MTPAP; poly(A) RNA polymerase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914624.2 True 2616 mRNA 0.48 10 15457999 15469154

Neighbor

gene id symbol gene type direction distance location
bambia bambi,LOC108274338,LOC107749375,LOC107584374,LOC107676764,LOC107549411 coding upstream 100313 15354169 ~ 15357686 (+)
waca wac,LOC107749376,LOC107738973,LOC107665881,LOC107549412 coding upstream 107523 15323575 ~ 15350476 (+)
fasn fasn coding upstream 135956 15298474 ~ 15322043 (+)
ccdc57 ccdc57 coding upstream 160880 15279663 ~ 15297119 (+)
csnk1db csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC103369437,LOC108274016,LOC107755503 coding upstream 191081 15255265 ~ 15266918 (+)
jcada kiaa1462 coding downstream 13151 15482305 ~ 15515044 (+)
svila svil coding downstream 58439 15527593 ~ 15604496 (+)
LOC113527272 NA coding downstream 136138 15605292 ~ 15614870 (+)
zeb1b zeb1 coding downstream 226609 15695763 ~ 15755399 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding downstream 1302083 16771237 ~ 16777328 (+)
G197174 NA non-coding upstream 189259 15267299 ~ 15268740 (+)
G196387 NA non-coding upstream 843342 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 856560 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 879541 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 931916 14523905 ~ 14526083 (+)
G197397 NA non-coding downstream 235978 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 252441 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 384780 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 577149 16046303 ~ 16046505 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding downstream 580442 16049596 ~ 16049892 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 1133718 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 1423856 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1898914 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 2436004 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2984016 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 1386535 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2076639 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 2685991 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 2972732 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 3336923 18806077 ~ 18812262 (+)

Expression


Co-expression Network