LOC113527107


Basic Information

Item Value
gene id LOC113527107
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19370326 ~ 19373349 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914625.2
GTTCCCTTTTACGAGTGCTAGGAATAGGCTTTTTTCATCTGTGCAGCTGGGAAACGGGTCTGAACTATTGCAGTGGGACAAATATTTGAGATTGAGAACTGAGAGGACACACAGAAGAACCATGCCATCAGCTGAGAAGATTTTGTACTTCCTGCCCAGTGCGTTGTTAAATGTAATCGGTGTGGCCATACTTGGTTATGGGATTTCAGCAGAGTGGGCCTCCTCCACCATGGACTGCTCACCTGCAGATACCAATTGGTTCAACGGAACTGCAACCATTCAAATGGGCCTGTTCGCAGGCACAGAGCTCAAAGATTCCTGTCCTCGGTTTACCACTAGTGAAAAACCCATCGCAGTGTTTGATTCTATGAGTGCAGTAGGGGGCGCTGGAATAGGCTTACATGCCGTGGTTGTTGTTCTGCTGGTCTTTGCTCTGGTGGCCTCTGCAGGTAGCATATTCATCACTCTCTACAACACCATCACTAATCCATATGAAACCTGCATGGGTCCCATTGGACTGTATGTCTGCAGTGGATTAAGTGCATGCTTGGCGTTTTTGGCAATGGTCCTGTACTTGATAAATCTGCTTGGGGTCAACATAGGAAAGAAGATATTGCTTTCAAACTTGAACGGAGTTCTGATGGATGAGACCGTGACATTCCTGGTTGGCTTTTTTATGATTCTGCCATACATTACAGTTAACCTGCTCGCCATACTTCTGGTGTATCTGTATGCGCATGCGGCCTACAGACAACGCCAAGAGCAGCAGAAACCCACGGAGGACGCACCAAAAGAGATTCTGATGTACTAAAGTGCAGAAGAGTCTATCCATAAGACTATGTGATCGAAGACATGCACTTATGATAGGAGGTTCTGCTATAGGTATATTACGCAAAATCAGGGACACTTCTGTAAGTAGGGTACGCTTACAATGTGACCAGAAGAAATACAGCAACACAGATGTTTTGgatgaaaaacaacacaaatttcattttattctgcttttctgtctttcctaaatattaaaaatatttttgtatggtTCTCTGTCCTAAGCATTTGATGTAACTGATGTCCTTTAAGTATTCTCAGAAATGAAAGAAGCAAACAATCTGTATGTACGTTTTCTGTAAATGTAGGTTAGCTTTCAGGAAAATTCttccaatatactgtatgagaAAAGATTGTACATATTAAGACCTCACACTTACAGTATCAACTTAATAAATACAGCCATAATTATTTATTGGTGCCAAAGA

Function

GO: NA

KEGG:

id description
K23841 CLRN; clarin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914625.2 True 1259 mRNA 0.42 3 19370326 19373349

Neighbor

gene id symbol gene type direction distance location
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 449560 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 667569 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 862468 18498245 ~ 18507858 (+)
LOC113527495 LOC108273717 coding upstream 940638 18421553 ~ 18429688 (+)
aatkb LOC108273714 coding upstream 1021969 18300226 ~ 18348357 (+)
c12h10orf90 LOC108273407 coding downstream 321049 19694398 ~ 19719754 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 354322 19727671 ~ 19825878 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 457253 19830602 ~ 19841026 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding downstream 472161 19845510 ~ 19853750 (+)
mrpl38 mrpl38 coding downstream 489963 19863312 ~ 19871403 (+)
LOC113527366 NA non-coding upstream 55511 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 545765 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 601636 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 666627 18703475 ~ 18703699 (+)
G198818 NA non-coding upstream 671823 18680173 ~ 18698503 (+)
G199051 NA non-coding downstream 53031 19426380 ~ 19426595 (+)
G199161 trim65 non-coding downstream 419285 19792634 ~ 19856480 (+)
G199187 NA non-coding downstream 503392 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 570895 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 577438 19950787 ~ 19953308 (+)
si:ch211-221j21.3 LOC108273429 other upstream 558064 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 860167 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1210240 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 1798261 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 2506831 16855689 ~ 16863495 (+)
LOC113527713 fam196a other downstream 153293 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 2084042 21457391 ~ 21500929 (+)
G200571 NA other downstream 2629475 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2635162 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2640457 22013806 ~ 22026481 (+)

Expression


Co-expression Network