zgc:171971 (LOC108273425)


Basic Information

Item Value
gene id zgc:171971
gene name LOC108273425
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7435509 ~ 7442712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914632.2
CGCTTAAACTTGGTCACATGATCGAAGGTTAGCAAAGATGCGCGTACTAGGAAGCTGTGAGAGTTTAACTGTAACAAAGATGTTATAAAGGTAGCAACAAACACAATGGCAGAAGGTGGTGATGGAGAACCTGTGGCCAGTTCATCTGGGACTCTGCGTCCGTGTTTCTCTTTGGGAAGAGGACTCGCAGGACGCTCTTTACTGAATCCTCCACCTCCGGGCAGACTCACATCCCTGCGCTCCAGAGACCTGACACTCGGGGGGTATAAAAAGAAAACATTTGTACCAAACGTCCACTCCATTCGTAAAAGCAAAGACGAGTTAAAGGAGGAGCCTCGTACTGCGCcgaagaaggagaaaagagaaagggaggacaggcagagagagcgcAGGCGGAGAGAGAGACCGCAGACTATTCAGTCGCACTCCATTTTTGAACAGGGTCCTGCAGACACCTTCAGGAAAACAGGAAGTTGGGGGACCACAAATCTAAGCGACTATGATCCTTCAGTTCTTACTAGGAGTATTAAAAAGGAGAGGAACATTCCTGTGGATGATGACGATGGAATTTTAGAAAAGCTTCAGCGAGATGATTTCATAGATGACCCTGGCCTGAAAAATGATCCCAAGCAGACACCAATAAGACTTCCACTGCATCAGTCGTTCGACTACTTGGCGACAGAGACGTCGACGTCTTGTCCTCAGCCGCCGAGTGTCGGAGAGCTTTTCCAGCAGTTGAGCGTTTCAGAGAAGGAAGAGCTTTTATTCATCCAGCTTCCCGATACCATACCTGTCTCCATAAAAGCTCTAAAAGgtgaaaaatctgtgaaaaaatCTGATGCTGAAGACAAGCGTGCCTCTCATATCAAAGCACAAGATCCAGGGGAGAAAGAGGCTGCGCCTGTGCTCTCGGACTTCACAGAAGGATTCATAGGAAAAGTGCAAATTAGGAAATCTGGCAAAGTACAGCTAGTCATAGGGGACGTTACACTGGACGTGTTGGAAGGAgcagctttttcttttctgcagCAACTCGTGTGTGTGCGGCTCACAGAGGGTCTGACTGGCGACATGACGGTGCTTGGGAACGTCAAACACAAGCTGGTGTGTTCCCCTGACTTCGAGGCTCTCCTAAAAGGGGTCAAGGCTCCATCACACATCCAGCCGCTCTTAAATACTATTCAGACGTGATGAGCTTTCCAGGCAGCCTGTAAAGTAAAGTTGCCAGAGGATGTTTGTAATGATCATGACTGATTTGCAGAAGATAAGTGCTCTCTGTATACATTACAGAGATGGGATGCTATGTATGCTATACTACACACTGTTACCACACGAGAACTGTTCCACACGCATATATAACCTGTTACATGGCACGACACTCCACATGCCTATATGACGTATGTAGACTATAGCTGTGTTAAGAACACAACAGCCATCAGACTCATCGCTTCTGTGACAAGCAGGATATTTTGAATGTCGTATTTTATTATTCACGTTTTAAACTCAAACTTTCAAACGCAAAATCTTGATTTCAGCTTGTCAGGTGACTGTAGAAAATGATTGCTTCTTGGAGTGTCTCCTTGAAGAAACAGAGGACAATTCAGTTCAAGAGGACAAGACAAAgcagaacatttcatttctcacAGTATACGATGGAATCTTTTAACAGGTCTATTTGCACACTATGCATTAACTTACAGTCCTTTTATGGTAGGGGAAAGATGACATAAACCAGGGCTTCCCTAACTAGGGGTCGTGACCACACGTGGGGTCGCttaatttacaaatggggttgagagagaaactcacagtcccctcatttattttaaattaatattacgAATATAACTGCAAAAATGTATTCTGTTACTATTTTGTAATGTTCCTCTTTCTAAAGAGCAACATTTGAATGAAGGTAATTATAGCTATCCTGACACTGcattagagtaaaaaaaaaaaaacaaaaaacaaaaatagatcaATTTCTCAGTCCAGTACTACTTCCAGTAGTTCCTCAACATGATGGCATTACTCTGACTCAGTGGAACAAAAGAAGTCAATTAAACAGACATCGAAACATTTATTGAATATGGATTTACAGTCAGGATGGTGAATAATGAACCCAACAGGAGAAACCAACAGGCCTGATGTGTGGCGGAGTTTTGGTGCATTGCAAAAACAGAGTATCCCCATATTTGTTTGCGTGCACTGAAAATGATTGCAAGCTGCTATCAGTATAAAGCCTAATTCAGTGCTGTTGCCtgcattaagtaaggaataacacgtGGTGGTATAAGAGGGAGAACATGCTTTGTGCATGCTGTTAAAAGACAACAATACACATCATgatggtagcagtaactctgctccCAGTCGGGGAgctatcacaccaccccagtgtgggttattttcctataataccACGCCCCCtcacgttttattccttacctatcGTTTGAAGCTGGACTTGACGGCGGAAATGAGATGCACCctttcaaacacacatgctgacTTTTcgatatataaaaatataagttCACGCTTCCCACTAgacagtgcaaggaatattcctttggtttttattCACACGCGTTATACATATagtaaaatgttcaaatgtaaaaatagtcctaaattataaatctggaataaaaaaTGTAGAGTAGTCAAGGCTTGAAGAGTCAGAGAAAAGTCATAATGTCTATTTGGGGTCCTTTGGCCAAAATGTTTGTGACCCCCAGGTATAGTCTTTCCAGATACAGAACCACACAGTCCGTATAAAATAACAGATTTTTATATCACACAGATACACTCCAATTACATTCCCACTTTCTCATAATCAGTgtaatactgtacatgtttgaGTTTGGGTTACATTGTATAGATACTTCATGTTGCTTGTTTCTTTTGTAGAAAATGTAGATATTTATTAAGTAAATGTACGACACAAAACATGGCGGCTGCGATTTTTAAGCATGATGTACAAGTGGATGTGTtctacaaagc
>XM_034309437.1
CGCTTAAACTTGGTCACATGATCGAAGGTTAGCAAAGATGCGCGTACTAGGAAGCTGTGAGAGTTTAACTGTAACAAAGATGTTATAAAGGTAGCAACAAACACAATGGCAGAAGGTGGTGATGGAGAACCTGTGGCCAGTTCATCTGGGACTCTGCGTCCGTGTTTCTCTTTGGGAAGAGGACTCGCAGGACGCTCTTTACTGAATCCTCCACCTCCGGGCAGACTCACATCCCTGCGCTCCAGAGACCTGACACTCGGGGGGTATAAAAAGAAAACATTTGTACCAAACGTCCACTCCATTCGTAAAAGCAAAGACGAGTTAAAGGAGGAGCCTCGTACTGCGCcgaagaaggagaaaagagaaagggaggacaggcagagagagcgcAGGCGGAGAGAGAGACCGCAGACTATTCAGTCGCACTCCATTTTTGAACAGGGTCCTGCAGACACCTTCAGGAAAACAGGAAGTTGGGGGACCACAAATCTAAGCGACTATGATCCTTCAGTTCTTACTAGGAGTATTAAAAAGGAGAGGAACATTCCTGTGGATGATGACGATGGAATTTTAGAAAAGCTTCAGCGAGATGATTTCATAGATGACCCTGGCCTGAAAAATGATCCCAAGCAGACACCAATAAGACTTCCACTGCATCAGTCGTTCGACTACTTGGCGACAGAGACGTCGACGTCTTTAAAAGAAGCACTGTCTGATCACACTTGTTCAAATTCTCTAAAAACGCACGAGAGGATTCCATCACAAACATGTGGAACTTCTGCAGGTCCTCAGCCGCCGAGTGTCGGAGAGCTTTTCCAGCAGTTGAGCGTTTCAGAGAAGGAAGAGCTTTTATTCATCCAGCTTCCCGATACCATACCTGTCTCCATAAAAGCTCTAAAAGgtgaaaaatctgtgaaaaaatCTGATGCTGAAGACAAGCGTGCCTCTCATATCAAAGCACAAGATCCAGGGGAGAAAGAGGCTGCGCCTGTGCTCTCGGACTTCACAGAAGGATTCATAGGAAAAGTGCAAATTAGGAAATCTGGCAAAGTACAGCTAGTCATAGGGGACGTTACACTGGACGTGTTGGAAGGAgcagctttttcttttctgcagCAACTCGTGTGTGTGCGGCTCACAGAGGGTCTGACTGGCGACATGACGGTGCTTGGGAACGTCAAACACAAGCTGGTGTGTTCCCCTGACTTCGAGGCTCTCCTAAAAGGGGTCAAGGCTCCATCACACATCCAGCCGCTCTTAAATACTATTCAGACGTGATGAGCTTTCCAGGCAGCCTGTAAAGTAAAGTTGCCAGAGGATGTTTGTAATGATCATGACTGATTTGCAGAAGATAAGTGCTCTCTGTATACATTACAGAGATGGGATGCTATGTATGCTATACTACACACTGTTACCACACGAGAACTGTTCCACACGCATATATAACCTGTTACATGGCACGACACTCCACATGCCTATATGACGTATGTAGACTATAGCTGTGTTAAGAACACAACAGCCATCAGACTCATCGCTTCTGTGACAAGCAGGATATTTTGAATGTCGTATTTTATTATTCACGTTTTAAACTCAAACTTTCAAACGCAAAATCTTGATTTCAGCTTGTCAGGTGACTGTAGAAAATGATTGCTTCTTGGAGTGTCTCCTTGAAGAAACAGAGGACAATTCAGTTCAAGAGGACAAGACAAAgcagaacatttcatttctcacAGTATACGATGGAATCTTTTAACAGGTCTATTTGCACACTATGCATTAACTTACAGTCCTTTTATGGTAGGGGAAAGATGACATAAACCAGGGCTTCCCTAACTAGGGGTCGTGACCACACGTGGGGTCGCttaatttacaaatggggttgagagagaaactcacagtcccctcatttattttaaattaatattacgAATATAACTGCAAAAATGTATTCTGTTACTATTTTGTAATGTTCCTCTTTCTAAAGAGCAACATTTGAATGAAGGTAATTATAGCTATCCTGACACTGcattagagtaaaaaaaaaaaaacaaaaaacaaaaatagatcaATTTCTCAGTCCAGTACTACTTCCAGTAGTTCCTCAACATGATGGCATTACTCTGACTCAGTGGAACAAAAGAAGTCAATTAAACAGACATCGAAACATTTATTGAATATGGATTTACAGTCAGGATGGTGAATAATGAACCCAACAGGAGAAACCAACAGGCCTGATGTGTGGCGGAGTTTTGGTGCATTGCAAAAACAGAGTATCCCCATATTTGTTTGCGTGCACTGAAAATGATTGCAAGCTGCTATCAGTATAAAGCCTAATTCAGTGCTGTTGCCtgcattaagtaaggaataacacgtGGTGGTATAAGAGGGAGAACATGCTTTGTGCATGCTGTTAAAAGACAACAATACACATCATgatggtagcagtaactctgctccCAGTCGGGGAgctatcacaccaccccagtgtgggttattttcctataataccACGCCCCCtcacgttttattccttacctatcGTTTGAAGCTGGACTTGACGGCGGAAATGAGATGCACCctttcaaacacacatgctgacTTTTcgatatataaaaatataagttCACGCTTCCCACTAgacagtgcaaggaatattcctttggtttttattCACACGCGTTATACATATagtaaaatgttcaaatgtaaaaatagtcctaaattataaatctggaataaaaaaTGTAGAGTAGTCAAGGCTTGAAGAGTCAGAGAAAAGTCATAATGTCTATTTGGGGTCCTTTGGCCAAAATGTTTGTGACCCCCAGGTATAGTCTTTCCAGATACAGAACCACACAGTCCGTATAAAATAACAGATTTTTATATCACACAGATACACTCCAATTACATTCCCACTTTCTCATAATCAGTgtaatactgtacatgtttgaGTTTGGGTTACATTGTATAGATACTTCATGTTGCTTGTTTCTTTTGTAGAAAATGTAGATATTTATTAAGTAAATGTACGACACAAAACATGGCGGCTGCGATTTTTAAGCATGATGTACAAGTGGATGTGTtctacaaagc

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914632.2 False 3006 mRNA 0.42 9 7435509 7442712
XM_034309437.1 True 3093 mRNA 0.42 9 7435509 7442712

Neighbor

gene id symbol gene type direction distance location
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 7675 7421966 ~ 7427834 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding downstream 203434 7047571 ~ 7232075 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding downstream 587543 6836437 ~ 6847966 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 669409 6756785 ~ 6766100 (-)
g6pca.1 LOC108274343 coding downstream 682777 6747052 ~ 6752732 (-)
fam13c fam13c coding upstream 104351 7547063 ~ 7560750 (-)
slc16a9b slc16a9 coding upstream 131364 7574076 ~ 7579872 (-)
tmem26b tmem26 coding upstream 361808 7804520 ~ 7809766 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 536844 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 578822 8021534 ~ 8141060 (-)
G192437 NA non-coding downstream 6626 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 122622 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 620074 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 625751 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 635433 6799642 ~ 6800076 (-)
G192545 NA non-coding upstream 186599 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 397651 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 398917 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 399348 7842060 ~ 7842634 (-)
G192611 NA non-coding upstream 432054 7874766 ~ 7877699 (-)
ipmkb ipmk other downstream 17131 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 841119 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1644239 5768528 ~ 5791270 (-)
G191430 NA other downstream 1821555 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1944584 5484691 ~ 5490925 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 138638 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 158506 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1404950 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1925505 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 2073102 9515814 ~ 9515885 (-)

Expression


Co-expression Network