ch25h (ch25h,LOC107753436,LOC107683723)


Basic Information

Item Value
gene id ch25h
gene name ch25h,LOC107753436,LOC107683723
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10077017 ~ 10078115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914636.2
ACTCAGCagctcacacagacacagagcaaCATATCTCAGCTCGCACAGGCACAAAGCGAAATGTCTCAGCTCCAAGGTTTCTGGGACTGCATCCTACAGTACGAGACCTGGTTAAGGTCTCCCCTGTTCCCTGTGCTGTTTTCACTGACAGTCTATTTAAGTTTCTGTTTACCTTTTGTACTTCTGGACCTCCTGTCCTCCAGAGTGGACCTGGTGAGGAGATACAAAATCCAGCAGAAACCGGTGACTTTGAGGATGATGTGGACCTGTCTGGCTCTCTCGCTCTACAATCACATTGTGTACATCTTCCCGCTGAGCGTGCTGCACTGGTACTGGAGACCTGTCGTCTACCCAGCAGAGGCTCCCAGTTTCCTTGAAGTCATCAGGCACTTGGTGAGCTGTTTGCTGCTCTTCGATTTCCAGTACTTCATCTGGCATATGCTGCATCACAAGGTGCCATGGCTTTACCGCACATTCCACAAGGTGCACCACAAGCACACGTCCACCTTCGCCCTCACTACAGAGTACTCGGGTGCTTGGGAGACGCTGTCGCTCGGCCTCTTCGCGGCGATGAACCCCATGCTGCTGGGCTGCCACCCGTTCACTGAGATGCTCTTTCATATTCTGAACATGTGGCTGTCAGTTGAAGACCACTGTGGGTATGACCTGCCCTGGGCCACACACAGACTTGTTCCTTTTGGACTGTATGGAGGCGCTCCACATCATGACCTTCATCACCAGAAGTTCAAGGCCAACTACGCTCCATACTTTACTCACTGGGACAAGCTGTTTGGGACTCTTCACACAGAGTGAACAGGCAAAGAAGGACTTCCAGATCACAGTACTATTTTGCATCAAAATGATCTCAGAGACTTTTCTGGATTCAATGAatctacaaaattaaaaaattaattattaatataaaccagctAAATGTTATACTATTTATTGAAAGTAAGTTATGAAGCTGATTGTGagtttttatatgtttgtatgtatttatCCAGTACATATGAAGTATAATTTATATGGTTTGTTATGCTTGTTGACCAAGAACAAAATACCACAAGTTGCATTAAAAAAGCTCTTTAAACATGAA

Function

symbol description
ch25h Predicted to enable C-4 methylsterol oxidase activity and cholesterol 25-hydroxylase activity. Acts upstream of or within defense response to virus. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

NR:

description
cholesterol 25-hydroxylase-like protein

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914636.2 True 1099 mRNA 0.46 1 10077017 10078115

Neighbor

gene id symbol gene type direction distance location
trnal-aag_8 NA coding upstream 12391 10064545 ~ 10064626 (+)
slc16a12b slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding upstream 14778 10053473 ~ 10062239 (+)
pank1b pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213 coding upstream 23823 10043909 ~ 10053194 (+)
LOC117598566 kif20b,LOC108410719 coding upstream 48896 10025230 ~ 10028121 (+)
kif20bb kif20b coding upstream 51441 10014547 ~ 10025576 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding downstream 19254 10097369 ~ 10101788 (+)
ankrd22 ankrd22 coding downstream 40773 10118888 ~ 10124842 (+)
rnls rnls coding downstream 57801 10135916 ~ 10166915 (+)
atad1b atad1,atad1b,LOC107669218 coding downstream 123874 10201989 ~ 10214955 (+)
cyth3a cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157 coding downstream 161655 10239770 ~ 10254637 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 250153 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 252549 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 296062 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 423757 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 489198 9587165 ~ 9587819 (+)
LOC117598497 NA non-coding downstream 66238 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 146587 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 246841 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 272084 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 516114 10594229 ~ 10662463 (+)
arhgap23b LOC108273815 other upstream 385422 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 561401 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 563182 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 564386 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 564616 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 566711 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1155475 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1208082 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1535784 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1984693 12062808 ~ 12085359 (+)

Expression


Co-expression Network