LOC113527122


Basic Information

Item Value
gene id LOC113527122
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21062462 ~ 21069464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914643.2
CACACCTCCAATTCAACACAGGAAACTGAAACCGTTTCCTCCATTTGTCAGTGAAATGTTTTAGAAGAACAATGAACACCAAGGGCAGTTTTACAGGAATATTCCTCTGTTTCCTGACTCTATTTACCTTAACAGACTGTAGCACATGTCAGACCAATATATTAGAAGGGGACAGTCTCACCTTTCAACTGACTGACAAGCAGCTTAAAGATAATGATCGATTCActataaaaaaagatgataaaatACTAGTCCCCAAAAGGAATAGGAAACAAGACGGACCAGGGATTGTGAAAGATAAGTTCCTGGAGCTCCAACCTGTGAAACTGAGCGATTCTGGGACATACAATGTTGAGGTTTTTGATGTGAACGGCATCAGAATAAAATCTCACTCAGAAAGCGTCTGTGTTTATGCAAAAATCCCCAAGCCAAGAGTGAATATTACATGTCAGGATGAGAAGGTTGACTTAAGATGTGATGTTGAAGGTGGCAAAGATCTATCTTTCAGCTGGTACAAAAATGGGAAAGATTTAAAGAAGAATGTATTAAACTTCTCAACAAATATTGAGGAGAACAAATCAAAGTATACATGTACTGCACAGAATCcagttaataaaaacacaagtgaTCCAGTGGAAGAAGCATGTTTCAAGCCTGCTACACTCTTTGGCTTTGACCTTTGGATCATGGTGGGCATCTTAGCTGGTGGAGGAGGTCTCGTACTGGTATTGATAATTGTGCTGGTGACTGTTGCCTGTCGTGCCTGTAAACGCAGAGAGAAACAACAGCGAGATGAAGAAGAGTTCCGACTGAACTACCTCAACACCTCTCCACCTCCTGGTCAACAAAAATCAAAGCAAACAGCAAGAGGTCAGCCAGCACCTCCAGAACCCTATGATGATGTTTCTGCCCAGGAAATCCCATGTCAGGCCGAACCTAGACCCAGGAACCAGCAACGCGCTCGGCCTCCACCACCTCCGATAGACGATGAGGAGGAACAACCTCCACCATTACCCCAACCTAGGAAAAAGGCACAGGTCAGAAAGCGTGAAGGACCAATGTGATGGAGGAGCGAGTACACCAGTCAGGTGAAATCATCGAAttctatttatatctgtatgtatgaatatatatgaaGGAAATAAGAGTGataataaatgtacaaataataaacataacatttcaGCACTTTTCTTGCATGTTTGCTTCGCATATatccatacatacataaataaatgcattttatataatattcatCGCCATTAGAACATAGTAAAGAGAATTGAATCAGCTTGGATTGCCTTCCATGAGCTCACAACCTGTCAATCCTGTAATATTAACTGAATGAAAAGAATTTTGTAAAactaaatgaagaaaaaagcagaaatccTTATTAGTGATAAGAGATAGAGGTTTTATTAGGATAGGGAATTTGGCTGTACTAGAAAAATTCTGAGAGTATGTTTGGGTGTAATTCCCAatttaacatgaacattttataaaataggaaaaaaaaaaatcaaatttttttatttaagaaaccGCAAACCTTTGCTTTCTCCTCATGCTGCAGCATCCTAAGAAACCGACCCATGGTGTTGTTTTTTCACATCTCGTCTAATGCAACGCTTTGTTTGGAAGGTACCAGAAACCACAATAGACAGATTGCAGCTAGTCAAGATGTTGCAGTCAAGAGTAACAACACGTACAATAAGAAATCGAGAACAACTTGCACCTCTTTCAGCATCATTGCAATGGCTATCTATTTCTTTTAGAACTGATTTTAAGATTTCCTTACTGGCTTATAAAACTCTCAGTAGATTAGCATCTCCATACATGTCTAGATAACTCTGTTCCAATTTGAGTTTTAAGGTCACATACTGGCTTGTTACATgctcaagttaaaaaaaaaaggggtgggTGAGGGGcagggggaggaaaaaaagactgCGGCAGCACCTGAAGCAGCTTTCTGTCACTATACAACAAAGATGTGTATAACTTAAACAATCAGTGTTCAGCAGAAGCATATCTTTAATCAATTAAAAGAACAACTAATATCATTAGAATTTTAATAGCAttgttcattctttatttttattttcctctataTTTATAATCCTATGTTAATTTCTTTCTATTAActattttaatgtttgttttgctgtattttttgaaatttattattattacttattattacttattattttgtaaaCCCTTTACTGAGATCGTATAATTTGCCTGGATGTACACATCTTACTTGAACTGAACTGTTCACTGATTCAGTCAATGTTCAGTTGTTATGGACAGTATGACTGACTGAATTGAGAGATTTTACATAAATTTATCTAAATGTAACTTACTTGGTATATATATGGCTCTCACACCACACAGTTTTAAAGGCAGATAGCAAAAACCCACTAAACGACACCTAGTccgctttttttttatcatcgtCTACTCATTTCCTGTGTGTGGGAGATACAAAACTGCaagagtttttttgttgttttttttttttttgtttcacaagCACACCACTTTGAACaccattttcaattttattttagcaACAGTAGTGTTGTCAGTAAAGctatttttaaagacttttagtacatcttgtgtttgtgtattcttAGATTTTCTCCTTATATTAAATCTGTTTTCTTGTGCATTTTGTCCATATATTGTCTATAAAATATGACTTTGTCTGCCTGAAGTCACTGTAGCACAGAgaagtgtttaaatgtgagATTATGAACAACTGTATATTCCATCATGGCCTTAAAACTGGAAATTAGACAAGATAAGACATTATGAAGGCAACATACctgattatataaataaattcatgaaatTCATGGAA
>XM_026914644.2
CACACCTCCAATTCAACACAGGAAACTGAAACCGTTTCCTCCATTTGTCAGTGAAATGTTTTAGAAGAACAATGAACACCAAGGGCAGTTTTACAGGAATATTCCTCTGTTTCCTGACTCTATTTACCTTAACAGACTGTAGCACATGTCAGACCAATATATTAGAAGGGGACAGTCTCACCTTTCAACTGACTGACAAGCAGCTTAAAGATAATGATCGATTCActataaaaaaagatgataaaatACTAGTCCCCAAAAGGAATAGGAAACAAGACGGACCAGGGATTGTGAAAGATAAGTTCCTGGAGCTCCAACCTGTGAAACTGAGCGATTCTGGGACATACAATGTTGAGGTTTTTGATGTGAACGGCATCAGAATAAAATCTCACTCAGAAAGCGTCTGTGTTTATGCAAAAATCCCCAAGCCAAGAGTGAATATTACATGTCAGGATGAGAAGGTTGACTTAAGATGTGATGTTGAAGGTGGCAAAGATCTATCTTTCAGCTGGTACAAAAATGGGAAAGATTTAAAGAAGAATGTATTAAACTTCTCAACAAATATTGAGGAGAACAAATCAAAGTATACATGTACTGCACAGAATCcagttaataaaaacacaagtgaTCCAGTGGAAGAAGCATGTTTCAAGCCTGCTACACTCTTTGGCTTTGACCTTTGGATCATGGTGGGCATCTTAGCTGGTGGAGGAGGTCTCGTACTGGTATTGATAATTGTGCTGGTGACTGTTGCCTGTCGTGCCTGTAAACGCAGAGAGAAACAACAGCGAGATGAAGAAGAGTTCCGACTGAACTACCTCAACACCTCTCCACCTCCTGGTCAACAAAAATCAAAGCAAACAGCAAGAGGTCAGCCAGCACCTCCAGAACCCTATGATGATGTTTCTGCCCAGGAAATCCCATGTCAGGCCGAACCTAGACCCAGGAACCAGCAACGCGCTCGGCCTCCACCACCTCCGATAGACGATGAGGAGGAACAACCTCCACCATTACCCCAACCTAGGAAAAAGGCACAGGTCAGAAAGCGTGAAGGACCAATGTGATGGAGGAGCGAGTACACCAGTCAGCATCCTAAGAAACCGACCCATGGTGTTGTTTTTTCACATCTCGTCTAATGCAACGCTTTGTTTGGAAGGTACCAGAAACCACAATAGACAGATTGCAGCTAGTCAAGATGTTGCAGTCAAGAGTAACAACACGTACAATAAGAAATCGAGAACAACTTGCACCTCTTTCAGCATCATTGCAATGGCTATCTATTTCTTTTAGAACTGATTTTAAGATTTCCTTACTGGCTTATAAAACTCTCAGTAGATTAGCATCTCCATACATGTCTAGATAACTCTGTTCCAATTTGAGTTTTAAGGTCACATACTGGCTTGTTACATgctcaagttaaaaaaaaaaggggtgggTGAGGGGcagggggaggaaaaaaagactgCGGCAGCACCTGAAGCAGCTTTCTGTCACTATACAACAAAGATGTGTATAACTTAAACAATCAGTGTTCAGCAGAAGCATATCTTTAATCAATTAAAAGAACAACTAATATCATTAGAATTTTAATAGCAttgttcattctttatttttattttcctctataTTTATAATCCTATGTTAATTTCTTTCTATTAActattttaatgtttgttttgctgtattttttgaaatttattattattacttattattacttattattttgtaaaCCCTTTACTGAGATCGTATAATTTGCCTGGATGTACACATCTTACTTGAACTGAACTGTTCACTGATTCAGTCAATGTTCAGTTGTTATGGACAGTATGACTGACTGAATTGAGAGATTTTACATAAATTTATCTAAATGTAACTTACTTGGTATATATATGGCTCTCACACCACACAGTTTTAAAGGCAGATAGCAAAAACCCACTAAACGACACCTAGTccgctttttttttatcatcgtCTACTCATTTCCTGTGTGTGGGAGATACAAAACTGCaagagtttttttgttgttttttttttttttgtttcacaagCACACCACTTTGAACaccattttcaattttattttagcaACAGTAGTGTTGTCAGTAAAGctatttttaaagacttttagtacatcttgtgtttgtgtattcttAGATTTTCTCCTTATATTAAATCTGTTTTCTTGTGCATTTTGTCCATATATTGTCTATAAAATATGACTTTGTCTGCCTGAAGTCACTGTAGCACAGAgaagtgtttaaatgtgagATTATGAACAACTGTATATTCCATCATGGCCTTAAAACTGGAAATTAGACAAGATAAGACATTATGAAGGCAACATACctgattatataaataaattcatgaaatTCATGGAA

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914643.2 True 2869 mRNA 0.36 5 21062462 21069464
XM_026914644.2 False 2384 mRNA 0.38 6 21062462 21069464

Neighbor

gene id symbol gene type direction distance location
lzts2b LOC108274048,LOC108439452 coding upstream 54077 20979187 ~ 21008385 (+)
hhex hhex,LOC107597790,LOC104952083 coding upstream 144438 20912718 ~ 20918024 (+)
fmn2b fmn2,fmn2b,LOC108413081,LOC107674408 coding upstream 308694 20663694 ~ 20753768 (+)
LOC113527089 chrm3 coding upstream 404997 20556591 ~ 20657465 (+)
ryr2a ryr2 coding upstream 561929 20319289 ~ 20500533 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding downstream 43012 21112476 ~ 21120953 (+)
pmp22b pmp22,LOC107561836,LOC107692454,LOC107753252,LOC107684480,LOC107597829 coding downstream 70393 21139857 ~ 21152926 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding downstream 543494 21612958 ~ 21639584 (+)
kcnj16 LOC108274207 coding downstream 683877 21753341 ~ 21777831 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding downstream 713565 21783029 ~ 21790227 (+)
G199796 NA non-coding upstream 467018 20595241 ~ 20595444 (+)
LOC113527335 NA non-coding upstream 810988 20234815 ~ 20251474 (+)
G199217 psd non-coding upstream 1109154 19950787 ~ 19953308 (+)
G199216 NA non-coding upstream 1117996 19944244 ~ 19944466 (+)
G199187 NA non-coding upstream 1176474 19876741 ~ 19885988 (+)
G200325 NA non-coding downstream 314612 21384076 ~ 21386033 (+)
G200418 NA non-coding downstream 540790 21610254 ~ 21610457 (+)
G200420 NA non-coding downstream 570230 21639694 ~ 21643654 (+)
G200430 NA non-coding downstream 583767 21653231 ~ 21654736 (+)
G200555 NA non-coding downstream 904765 21974229 ~ 21978282 (+)
LOC113527713 fam196a other upstream 1495778 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 2250200 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 2552303 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 2902376 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 3490397 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 387927 21457391 ~ 21500929 (+)
G200571 NA other downstream 933360 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 939047 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 944342 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 1728678 22798142 ~ 22871284 (+)

Expression


Co-expression Network