aqp8a.1 (LOC108274292)


Basic Information

Item Value
gene id aqp8a.1
gene name LOC108274292
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10722440 ~ 10724659 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914645.2
GACTGGAGTACATGTGGACAGTGTGTTGGTGACCGTAGAGAAGCATGACTGAATCCAAGTGTGAGCTATTTACTGTGGCCAGTGCAGAGACTGTCCAGTGTCAGAAAGAGCAGGCTGCCCCCATGGGTTTCTTCGAGCACTATGTTCAGCCCTGCCTGGCTGAGCTTATCGGCTCCGCTCTCTTCATATTTGTAGGCTGCATCTCAGTCATCGGCAACGTGGGAATCACAGGCAGTATTCAGCCTGCGCTGGCACATGGACTGGCCCTGGCTATCGTTGTTGCAGTGTTTGGAGAGATCAGTGGGGGTCACTTTAATCCTGCTGTGACGGTGTGCGCGTACCTTGTGGGAGGAATGGAGCTGATCCTTCTTGTTCCATATGTACTTGCACAAATGGTTGGTGGAATGATCGGGGCTGGTCTTGCCAAAGCCATCTCCCCACCCATTGAGTTCAATAATGCATCTGGAGCTGCGTTCACTGCTGTCAGTAGTAGCGCTGATGTAGGAGCTGTTACTGTGGCTGAAATGGTGATGACTCTCTTCCTGACCATGGTGGTCAGCATGGGGGCTGTGAATGGGAGGACACGTTGCCCGTTCGCTCCCTTCCTCATTGGCCTTACAGTGACAGCGAACATCCTGGCTGGAGGTATGATCTCTGGAGCGTGCATGAATCCAGCTCGAGCTTTTGGGCCAGCAGTGGTGGCTAATCACTGGGCCTACCACTGGGTATACTGGATTGGACCTGTGACTGGTGCCTTGCTCACTGTCAGCATTGTCAGGTTATTGATGGGTGACAAGAAGACTCGCgttgtatttaaataatagaGCTGCAACTTATGAAGGTCATTCATGACATGCTTATGAAAGTCATTAATGATGTTCTTTTGACTAAGTAGCCATTTAATGATGAAACTGTATGTAGAAAGTCTCTCGCTAATTTTACCTTCattgtcttgtttgttttttcttcattatttttcaaacaAGCTAACTGTAACAGACTAACTGCTGCATATTACCTGTATAAAGCTGTATTGCATATCTTCCAATCTGCTGTAAAAACAAATTTTCTACCTCTTTAACACTGTATCTTCCTATATAGTGAAAAGtcatgtataaaataaaaccttttgcttttgtttgatAATAA

Function

NR:

description
aquaporin-8-like

GO:

id name namespace
GO:0071918 urea transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K09884 AQPN; aquaporin rerated protein, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914645.2 True 1149 mRNA 0.46 5 10722440 10724659

Neighbor

gene id symbol gene type direction distance location
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding upstream 1758 10713814 ~ 10720682 (+)
LOC113527483 NA coding upstream 28941 10690548 ~ 10693499 (+)
grid2ipb grid2ip,LOC107584118,LOC108274076,LOC107669204,LOC107734213,LOC107731383 coding upstream 32417 10669180 ~ 10690023 (+)
mlst8 mlst8 coding upstream 67408 10651288 ~ 10655032 (+)
meiob meiob coding upstream 71079 10647273 ~ 10651361 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding downstream 2034 10726693 ~ 10728551 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding downstream 30260 10754919 ~ 10779575 (+)
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding downstream 87486 10812145 ~ 10821178 (+)
shisa9a shisa9 coding downstream 187459 10912118 ~ 10937879 (+)
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding downstream 372306 11096965 ~ 11100503 (+)
G194113 NA non-coding upstream 10425 10711321 ~ 10712015 (+)
G194091 zdhhc4,LOC108274079 non-coding upstream 59977 10594229 ~ 10662463 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding upstream 61490 10659878 ~ 10660950 (+)
G193972 NA non-coding upstream 371820 10350199 ~ 10350620 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding upstream 386193 10324956 ~ 10336247 (+)
G194201 NA non-coding downstream 56004 10780663 ~ 10780884 (+)
LOC113527761 NA non-coding downstream 64108 10788767 ~ 10790017 (+)
G194276 NA non-coding downstream 240291 10964950 ~ 10965617 (+)
G194278 NA non-coding downstream 240979 10965638 ~ 10968033 (+)
G194365 tnfrsf17 non-coding downstream 337505 11062164 ~ 11063682 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 75893 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1030845 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1206824 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1208605 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1209809 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 508931 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 561538 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 889240 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1338149 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1748020 12472679 ~ 12473983 (+)

Expression


Co-expression Network