hexdc (hexdc)


Basic Information

Item Value
gene id hexdc
gene name hexdc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14540500 ~ 14546876 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914650.2
GTCATCCGTCACGGACCTACTAGACGCACGCGCACGTACGCACCTGTGAGTTCCGCGTTCAGCACGGTGCACCAGCAGACACCACGATCACACAACAGGACCTGCCATGGACGTTTGTGCATTGTCAAGAGGCAAAAAATTGGTTCACTTGGATTTAAAAGGAGCACCTCCTAGAATTAACTACTTATATGAGCTGATCCAGCTTTTTGCTGATCTGGGTGCAAATGGCCTCCTTATTGAGTATGAGGATATGTTTCCCTATGAAGGAGAGCTGAAGATTCTTCAGTCAAAATCTCACCCACCCTACAGCCGTGAAGAAATTATTGCCATTCAAGATGTCGCTTATTCCAGAGGGTTGGAGATCATTCCTCTGGTGCAGACATTTGGACACCttgaaTTTGTCCTGAAGCATAGCACCTTCAGCAAGTTGCGAGAAGTAAGCCACTGCCTGGGGACCCTGAACCCACACAGCAAGCAAGGACTTACCCTTATACTGGAGATGCTGCGTCAAGTTATGGTGCTTCATCCGAGGAGCACTGTTCTGCATATCGGGGCAGATGAGGTATACACATTGGGTCAAGGAGAGGAGTCTAAAGAGTGGTTAAGCATTCCAGGTCACAGTATTGACAAGCTGTTCCTCAGTCATGTCACTAAGGTGGCAAAAGGCATTAGGGAGACTTACCCCAGCCTCAGTGTGATAATATGGGACGACATGCTGAGGAACATGACCTCTGACACCATTAAAGATAGTGGTTTGGTAGGACTAGTGCAGCCCATGCTGTGGGACTACAAACCTACTCTGGATGTGGCCAACAACATTATGCTAATGGAGAAATACAAGGCTGCTGGTTTATCCCAACAGTGGATTGCGAGTTCTTTCAAAGGCTCCACCACTGTATACACTTGTGTAACCAGCACACAAAGGCATGTGGACAATCACGTTCAGTGGTTAAAAGTGGTATCTGGTCTTTCACCTGGCGTTGATCTACAGGGCATTGCACTCACTGGCTGGCAAAGatatGACCATCTGTCTGTTTTGTGCGAATTGATGCCCCTTGGCTTGCACTCTCTTGCCTCATGTCTGCAGACTCTACAAcatgGAAGCTTTACTCAGGAAGCTCAGCAGAAGGTGATGGAGGCACTTGGCACGGGCACGACTGAAGTTGGAGATGTAGAGAGGTTGTCTCAAGGTTGCTCCCACTCATACACTGGCATAAAACTGGCTGAACTCATTGTACAGCTAACAGCAATGCTTGAGTCGGAAGATCTCAGACACTTTGAGAGCAATATGTTTGTGAGAGGCTGGTTCTCCCCTTATCATAGACAGCAGAAGACTATCAACCCACTTATTGCACAACAAATCCAGAACCAGGCACAAACGTTCCTGGAAGCTATAGAGTTCAAGGTGCAGGAGGTGAGGCAGGAGATGAACCTGCTTTACCCAGATCTAACAGTGGAGGAATGGGTTACTCAGCATGCCACTCCAGTACTGAAACCCATTCAAGATTTACTGACCGATATCCAAACTGTCTTGGAGGATATGGGACTTTACATGAGTGAATCTCAAAGTGGACTCTGAGTttcatttgaaagaaaaaaaactcttataTTTGTTAATGAAAGAAGGGAAAATAAGGAACACTGTTCCTAATGTTGCTAATGTTTTGTGCCATATTGCCAGATATTGCATAGacatatataaaatgatctaaatgcattacataaatgtcaaatgtttTAAGATGCATAATATGAACTACATTCTTCAGTTTATGGTGGCTATTTGTTGAGGTTCTCTTCAAAGCTGCACTTTGTCTTCTGCTATTAATAACTAATGAATATTCACCTTAATATTAACTAATTAATATGCTCAGTTCACCTGTGaatttattgtgtaaatatgattcatttttaaaataaattaaacatgtcaaatattaaaa
>XM_034309207.1
GTACGCACCTGTGAGTTCCGCGTTCAGCACGGTGCACCAGCAGACACCACGggttgctgtggatccagagcctatcccaggaataccgGGTGCGAGATCACACAACAGGACCTGCCATGGACGTTTGTGCATTGTCAAGAGGCAAAAAATTGGTTCACTTGGATTTAAAAGGAGCACCTCCTAGAATTAACTACTTATATGAGCTGATCCAGCTTTTTGCTGATCTGGGTGCAAATGGCCTCCTTATTGAGTATGAGGATATGTTTCCCTATGAAGGAGAGCTGAAGATTCTTCAGTCAAAATCTCACCCACCCTACAGCCGTGAAGAAATTATTGCCATTCAAGATGTCGCTTATTCCAGAGGGTTGGAGATCATTCCTCTGGTGCAGACATTTGGACACCttgaaTTTGTCCTGAAGCATAGCACCTTCAGCAAGTTGCGAGAAGTAAGCCACTGCCTGGGGACCCTGAACCCACACAGCAAGCAAGGACTTACCCTTATACTGGAGATGCTGCGTCAAGTTATGGTGCTTCATCCGAGGAGCACTGTTCTGCATATCGGGGCAGATGAGGTATACACATTGGGTCAAGGAGAGGAGTCTAAAGAGTGGTTAAGCATTCCAGGTCACAGTATTGACAAGCTGTTCCTCAGTCATGTCACTAAGGTGGCAAAAGGCATTAGGGAGACTTACCCCAGCCTCAGTGTGATAATATGGGACGACATGCTGAGGAACATGACCTCTGACACCATTAAAGATAGTGGTTTGGTAGGACTAGTGCAGCCCATGCTGTGGGACTACAAACCTACTCTGGATGTGGCCAACAACATTATGCTAATGGAGAAATACAAGGCTGCTGGTTTATCCCAACAGTGGATTGCGAGTTCTTTCAAAGGCTCCACCACTGTATACACTTGTGTAACCAGCACACAAAGGCATGTGGACAATCACGTTCAGTGGTTAAAAGTGGTATCTGGTCTTTCACCTGGCGTTGATCTACAGGGCATTGCACTCACTGGCTGGCAAAGatatGACCATCTGTCTGTTTTGTGCGAATTGATGCCCCTTGGCTTGCACTCTCTTGCCTCATGTCTGCAGACTCTACAAcatgGAAGCTTTACTCAGGAAGCTCAGCAGAAGGTGATGGAGGCACTTGGCACGGGCACGACTGAAGTTGGAGATGTAGAGAGGTTGTCTCAAGGTTGCTCCCACTCATACACTGGCATAAAACTGGCTGAACTCATTGTACAGCTAACAGCAATGCTTGAGTCGGAAGATCTCAGACACTTTGAGAGCAATATGTTTGTGAGAGGCTGGTTCTCCCCTTATCATAGACAGCAGAAGACTATCAACCCACTTATTGCACAACAAATCCAGAACCAGGCACAAACGTTCCTGGAAGCTATAGAGTTCAAGGTGCAGGAGGTGAGGCAGGAGATGAACCTGCTTTACCCAGATCTAACAGTGGAGGAATGGGTTACTCAGCATGCCACTCCAGTACTGAAACCCATTCAAGATTTACTGACCGATATCCAAACTGTCTTGGAGGATATGGGACTTTACATGAGTGAATCTCAAAGTGGACTCTGAGTttcatttgaaagaaaaaaaactcttataTTTGTTAATGAAAGAAGGGAAAATAAGGAACACTGTTCCTAATGTTGCTAATGTTTTGTGCCATATTGCCAGATATTGCATAGacatatataaaatgatctaaatgcattacataaatgtcaaatgtttTAAGATGCATAATATGAACTACATTCTTCAGTTTATGGTGGCTATTTGTTGAGGTTCTCTTCAAAGCTGCACTTTGTCTTCTGCTATTAATAACTAATGAATATTCACCTTAATATTAACTAATTAATATGCTCAGTTCACCTGTGaatttattgtgtaaatatgattcatttttaaaataaattaaacatgtcaaatattaaaa

Function

symbol description
hexdc Predicted to enable hexosaminidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human HEXD (hexosaminidase D).

NR:

description
hexosaminidase D isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K14459 HEX; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914650.2 False 1943 mRNA 0.44 13 14540500 14546876
XM_034309207.1 True 1953 mRNA 0.44 14 14540535 14546876

Neighbor

gene id symbol gene type direction distance location
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 94668 14394714 ~ 14445832 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding upstream 148748 14369710 ~ 14391752 (+)
syt15 LOC108273430 coding upstream 185894 14349833 ~ 14354606 (+)
timm23a timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858 coding upstream 205951 14330419 ~ 14334549 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding upstream 268976 14268676 ~ 14271524 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding downstream 1072 14547948 ~ 14558925 (+)
slc16a5a slc16a5 coding downstream 13677 14560553 ~ 14570289 (+)
tap2t LOC108273873 coding downstream 24717 14571593 ~ 14577671 (+)
acsf2 acsf2 coding downstream 40389 14587265 ~ 14609925 (+)
stxbp4 stxbp4 coding downstream 165454 14712330 ~ 14736267 (+)
G196360 NA non-coding upstream 14417 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 202230 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 213140 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 252674 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 276114 14264176 ~ 14264386 (+)
G196378 NA non-coding downstream 31030 14577906 ~ 14578458 (+)
G196386 NA non-coding downstream 50902 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 58427 14605303 ~ 14614657 (+)
G197174 NA non-coding downstream 720423 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1158256 15705132 ~ 15714087 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 216219 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 506357 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 981415 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1518505 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2066517 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2308813 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2998917 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3608269 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3895010 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4259201 18806077 ~ 18812262 (+)

Expression


Co-expression Network