asb3 (LOC108274349,LOC108430683)


Basic Information

Item Value
gene id asb3
gene name LOC108274349,LOC108430683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17022725 ~ 17028922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914655.2
CAGGTCAGGACAGGAGAGGACaagacaggagaggagaggacaggTCAGGTCAGGAGAGGACAAGACAGGAGAAGAGAGGTCAGGTcaggacaggagaggagagaacaGGTCAGGAGAGGCGCGATGATGTTCACAGAGTGTTATCAGGACACTTGCTCGGTGGTGGCGCTTGCagtgaggagaggagagtgCAGGCTGTTACAGAGGCTCCTGAGGAAAGGCCACTCGGTGGATGTGAAAGATAACCGCGGCTGGAACGCTTTACATGAAGCTGCTGCTGGAGGACATGCGCAGTGTGTGCGCCTCCTGCTCTCTGCTTCCGATAGCTATGAAGACTATGTGAACTCACTGACTCACAATTCTGAAACACCTCTGTATTTTGCGGCGAAGAACGGCCACCTCCGCGCGGCACGCCGCCTCATAAGGGCTGGGGCAGATCTCAACAAGATGTCCAATGACCTCTCCAGCCCACTCTTTGCCGCTGTGGATAGCGGCCATAAAGAAGTCGTGGAGCTGTTGGTTAGCGAAGGAGCAGAGGTTAATGGAACACACTTCATCTCAGGCTGGTCCTGTCTTCATCAGGCTGTTTACAAGgACCATACAGAGATAGTAAAATTTCTGGTAAGCGTGTGTTCTCTTGAGGCTGTGGATGACTATGGGATCACGCCGCTGTTCGTTGCTGCACAGTACGGACATCACCAGTGTCTAGAGATGCTTGCTAATGCTGGTGCGAATGTGAATTGCCAGGCGAAGGACATGGCCACCCCGCTGCTCATTGCAGCTCAGGAAGGCCATTTATCATGCGTGGAGCTTCTGCTGGCCCATAAGGCAGACCCAAACCTGTACTGCAATGAAGACCAGTGGCAGCTTCCCATCCACGCTGCAGCCCAGTTCAGTCGCATCAGTATTCTAGAGAAACTGATCCCTGTCACGGACCGGGAGTGTGACCGGGGCAAGGGAAAGGTCAGTCCAGTGTATCTGGCAGTGCTTAGTGGTCAAGCGGAAAGCCTCCGGCCTCTGCTCAGAGAGGGCTACAGTCCAGATGCTCAGAGCTGCAGGGAGTTCGGATATTGCTGCCCCCTGGACATGGCTCTCTGGTGTAACTCTTGGAGTGTGGGCAGTGATTTCCACCAGAGTCGAGAGATCACAAAGATGCTGCTGGCCAATGGAGCTTGCGTCAGTCTGGCTACATACATACTGACATTGCAGGGCCACGTACCTGAACATCTGTCGCTCATCCTGGAATATTGTGGCCTGCCTAAGGGCGAGCAGCTGGAGGCACTAGTTCAGGCAGCAGTGAATAAAGTGGCCCATGCTTCATTTTGGCTTCCATTGTTGCTCAAAGCAGGACTAGACCCTCTACTTCTCCTTCAGCAGAAAATGCTAGAAGAGGCTGAATCCAGAGTACTTAACTTCTTTCTGGAGTTTATTAATTGGAAGACTCTGCCCTCAACATTGCTTCACATCCTATCTCAGCGCAGAGCAGAGAACACTTGGACGCCGCATAAGCATTTTGAGAGTGTTCCTGATCTGACTCATCTGTGTAGACTCGCTGTAAGAGCTACAGTGGGCAGCGATGCTTTGTCTAAACCCTCCTTTGTTCGGCAGCTGCCTGTTCCCACACTTCTGCAAGACTACCTCCAGTTCAGTGACATATCGAGTGCTTACACCTTCACAGCCTCAGCTAACCGAGAGTCGCCTAATTAAGTGATCTCACATGTTCCGCTCTCAGTATTTTGTATATATGTTAATAAAACCATTGAACACTGCTGAAATTGGA

Function

NR:

description
ankyrin repeat and SOCS box protein 3-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10325 ASB3; ankyrin repeat and SOCS box protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914655.2 True 1780 mRNA 0.52 9 17022725 17028922

Neighbor

gene id symbol gene type direction distance location
slc9a3r1a slc9a3r1 coding upstream 99497 16901393 ~ 16923228 (+)
narf narf,LOC107581643 coding upstream 122995 16890364 ~ 16899730 (+)
ddit4 ddit4 coding upstream 154296 16866210 ~ 16868429 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding upstream 239019 16778289 ~ 16783706 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding upstream 245397 16771237 ~ 16777328 (+)
nrxn1a LOC108274166 coding downstream 96262 17125184 ~ 17274561 (+)
fshr LOC100304505,LOC108430642 coding downstream 287342 17316264 ~ 17326970 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding downstream 439214 17468136 ~ 17473825 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding downstream 451301 17480223 ~ 17487726 (+)
trnai-uau_6 NA coding downstream 548361 17577283 ~ 17577376 (+)
G197803 NA non-coding upstream 68714 16943946 ~ 16954011 (+)
G197816 NA non-coding upstream 115583 16906830 ~ 16907142 (+)
G197726 dnai2,LOC107654551 non-coding upstream 258398 16764008 ~ 16764327 (+)
LOC117598690 NA non-coding upstream 258923 16758108 ~ 16763802 (+)
G197660 NA non-coding upstream 523780 16498714 ~ 16498945 (+)
LOC117598668 NA non-coding downstream 1828 17030750 ~ 17043247 (+)
G198007 NA non-coding downstream 298852 17327774 ~ 17327950 (+)
G198008 NA non-coding downstream 317094 17346016 ~ 17348598 (+)
G198041 NA non-coding downstream 372483 17401405 ~ 17403628 (+)
G198045 NA non-coding downstream 376781 17405703 ~ 17411141 (+)
anapc16 anapc16,cj104 other upstream 159230 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2698444 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 2988582 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3463640 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4000730 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 516871 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 1126223 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1412964 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1777155 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 2497720 19526642 ~ 19566684 (+)

Expression


Co-expression Network