LOC113527142 (gas7,LOC107653998,LOC107719691)


Basic Information

Item Value
gene id LOC113527142
gene name gas7,LOC107653998,LOC107719691
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9093141 ~ 9132326 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914686.2
GGTTTACCGCGCGCGTGCTGCCAGAGGACCACATCTGCTCGGGATCCCTCAGCACTGGAGTGCAGTTTGTTCTGTCACaggagaggaaacagctgtaaaGCGCAAGGTGGTAAAAACTTACAAGGTAAGAAGGAAGCGAAAAGGAGTAGTCGGatagaaagaagagaaagtggTTGACGGTGCTGAGTGCTCGCTTGGGGAAGTTAGTTTGTGATGTCGGGATCGCTGTGTCGGAGTTTGTACGCGTTCAGCGGCGAGCAGCACGAGCGCGGTTTGCGCTTCCAGCCCGGGGAGCTGATCCGCATCACGCGCGCGCTGCCCGGAGGCTGGTGGGAAGGAGAGAAGGATGGAATCACGGGATGGTTCCCTTCCAGTTACGTCCAAGTCGTGGAGAAATCTGCCTCCTTGAGCGTGTTGCCTGGTGAGGAGCCTTGCCAAAGCCCATTGCccaaagactggaagtgttacATGTCACCACAGGGAAGGAAGTACTACGTCAACACTGTAAGCAATGAGACTACATGGGAAAGGCcttccagtgttcctgggacaccCAGAACATTATCGCGACATAAGAACTCCTTACCAACGGTGAATGGATTTCATGGCAACAGTGGCCCATTGCATCAGACAGAGCAGTCACATGTACCAACACAGAAGGCCAACACAGATCAACAGAGCCCTGTGTCCACATCTCCAAGGAGGACGGAGCACAAGACCTCAGTCACGCAAATCAACGGTGTGACGTTCCCCCTCCCGTTACACTCCTCCGAACAGCAACTGCTCAAACCAGGCGAGTGGAGCTACTGCGATTATTTTTGGTCAGACAGAAAGGACCCACAGGGGAATGCCAGCATCACAGGCTTTGAGGTCTTACTGCAGAAGCAGTTGAAGGGGAAACAGATGCAGAAGGAGATGGCTGACTTTATGAGAGAGAGGATCAGGATTGAAGAAGAGTATGCCAAGAATCTCTTGAAACTCTCTCAGATCCCTCTAGCAGCTCAGGAGGAAGGCACACTGGGAGAGGCCTGGgcccagctgaagaaaagccTGGCAGATGAAGCCGAAGTGCATCTCAAGTTCTCCTCTAAGCTACAGAGTGAGGTAGAAAAGCCCCTCCTTACATATCGGGACAACTTTAAAAAGGACATGAAGAAGTTTGACCACCAAATTACTGATCTCAGGAAGCAGCTGGCCGGTCGATATGCTGCTGTTGAAAAGGCACGTAAAGCGCTTGCAGAGAGGCAGAAGGATCTGGAGGTAAAGACTCAACAGCTGGAGATCAAACTGAGCACAAAGATTGAGGAGGACATCAAAAAGGCCCGCAGGAAATCAACACAGGCAGGTGATGATCTGATGCGATGTGTTGACCTGTACAACCAGTCTCAGTCTAAATGGTTTGAGGAGATGGTCACTACAAGTCTGGAGCTGGAGAGACTTGAAGTGGAGCGAATAGAAGTAATTAGAAAACACCTCGGCCAATACACAACGCTGCGGCATGAGACGGACATGTTCAACCAAAGCACGATAGAACCAGTGGACAAACTACTCCAGATTGTAGATCCAGGCAAAGACAGAGAAATGTGGGTAAAGGAGCACAAGACGGGTGAGGTGAGACCAGTGGACATGGAGCTCTAACCCAGA

Function

symbol description
gas7 Enables identical protein binding activity. Predicted to be involved in actin filament polymerization and neuron projection morphogenesis. Predicted to act upstream of or within actin filament bundle assembly; neuron differentiation; and regulation of cell shape. Predicted to be located in ruffle. Predicted to be active in actin filament; cytoplasm; and plasma membrane.

GO: NA

KEGG:

id description
K18618 GAS7; growth arrest-specific protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914686.2 True 1644 mRNA 0.51 14 9093141 9132326

Neighbor

gene id symbol gene type direction distance location
trnal-aag_5 NA coding downstream 9331 9083729 ~ 9083810 (-)
trnal-aag_4 NA coding downstream 10201 9082859 ~ 9082940 (-)
trnal-uag_6 NA coding downstream 11135 9081925 ~ 9082006 (-)
trnal-uag_5 NA coding downstream 11884 9081176 ~ 9081257 (-)
trnaa-cgc_3 NA coding downstream 12060 9081010 ~ 9081081 (-)
myocd myocd coding upstream 29898 9162224 ~ 9251115 (-)
foxk2 foxk2,LOC107719587 coding upstream 349224 9481550 ~ 9499180 (-)
wdr45b wdr45b,LOC107598578 coding upstream 367934 9500260 ~ 9509293 (-)
si:ch1073-357b18.4 LOC108273401 coding upstream 384883 9517209 ~ 9520812 (-)
LOC113527284 LOC108424836 coding upstream 462460 9594786 ~ 9596403 (-)
G193138 LOC108273751 non-coding downstream 164493 8927981 ~ 8928648 (-)
G192945 NA non-coding downstream 551860 8464309 ~ 8541281 (-)
G192953 eef2k non-coding downstream 579671 8480420 ~ 8513470 (-)
G192954 NA non-coding downstream 607963 8483608 ~ 8485178 (-)
G192948 NA non-coding downstream 637838 8452197 ~ 8455303 (-)
G193315 NA non-coding upstream 22116 9154442 ~ 9156287 (-)
G193319 NA non-coding upstream 25865 9158191 ~ 9158569 (-)
G193316 NA non-coding upstream 27108 9159434 ~ 9184089 (-)
G193334 NA non-coding upstream 69666 9201992 ~ 9202672 (-)
G193355 dnah9 non-coding upstream 140091 9272417 ~ 9272654 (-)
si:dkey-94l16.4 LOC108273749 other downstream 235393 8847662 ~ 8857748 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1325629 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 1497260 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1674763 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 2498751 6546941 ~ 6594390 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 235891 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 383488 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 383746 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 454840 9587166 ~ 9590116 (-)
trnal-aag_7 NA other upstream 458049 9590375 ~ 9590456 (-)

Expression


Co-expression Network