gabrz (gabrz,LOC108273489,LOC108426470,LOC107675029,LOC107565977,LOC107754081,LOC107563789,LOC107677887,LOC107743757)


Basic Information

Item Value
gene id gabrz
gene name gabrz,LOC108273489,LOC108426470,LOC107675029,LOC107565977,LOC107754081,LOC107563789,LOC107677887,LOC107743757
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12522935 ~ 12544716 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914694.2
CTCTGAGCGCGAGCGCATCTGACGCGGGTTTCAACGCAAACAAAACGCAAGctgACAGAAGCATCTGACGCACTGAGGCTGTGCAGATGAGCGCTCAGTTATTCGCCGCTGCTCCTGTTCAGTTTGGACATGCACACGCGTGAACGACTTTAAATACATACGCTTGAAACTCCAGCAGCCATGTGTTCATGCAGCCCCCTGGGCTCTGTAGTCTTCCTTCTTATTATTAGCAGGATCATACAGGTTTCAAACTCCAGTGCTGAGGAGGTCCTACCACCTACCATTCAGAAACTGATGAAGGGCTACAACAAGTACCTGAGGCCTTTCTTCGGGAATGGTCCTGTTACTGTTGGCATGAGTTTGGACATCGCCAGCATAGATACTATATCAGAGATCAACATGGACTACACAGCAACTATCTTCTTGCGGCAGCGCTGGACAGATGAGCGTCTGTGCTTTGATGGCAATAAGAGCCTGAGTTTGGACGGCAGGCTGGTGGAGCTTCTCTGGGTTCCTGACACGTTCATTGTGGACTCCAAAAAATCCTTTCTGCATGACATCACTGTGGAGAACAGACTGATCAGGATATTCCCAAACGGCACCGTGCTTTATGCTCTGAGAATCACCACCACAGTGGCCTGCAGTATGGACCTGACCAAGTATCCCATGGACAAACAAACTTGCACACTTCAGCTAGAAAGCTGGGGTTATAATGTGAAAGATGTGGTGTTTCATTGGACACGTGGGAACCAGTCAGTTAGTGGACTTGATACTCTGCAGCTGGCCCAGTACACACTGGAGGACTACTATACCTCAGAGTCTGAAGCTGTGTATGAGACAGGCAGGTACCCAAAGCTGATTTTCCACTTCCAGCTGAGGCGAAGCATCCTATACTTCATTCTGGAGACTTATGTGCCATCTAGTGCCCTGGTGGTTTTGTCCTGGGTCTCCTTCTGGATCAGCCAGTCCTCTGTCCCTGCTCGCATTTGCATAGGGGTGACCACAGTCCTGACAATGACCACTCTGATGATGGGCGCACGCACTTCTCTGCCCAATGCTAACTGCTTCATTAAAGCCATTGATGTGTACCTGGGTATCTGCTTCAGCTTCATCTTTGGTGCCCTCATAGAGTATGCTGTGGCCCATTTCTGTACTTTACACCAACCAAATGCTGCCAATGCATATATGTATGGACAGGAGATGCAGGAACGTGAGGATGAGATGAATGGGATCGTCGCATCCATTGGCAGCCAGGCTCTGCGGGTACGCAGAAGGGAGGAGATGCTGTCCCGTGCTGGCAGCACTAGCAGTCCCACTCCCAGTGACACTAAAGAGGACAAGTCGTCCTCCCAGACCAAGAGTGGCTGCACCAAGTCCCTGTCACTGCTGCGCCGCATTGTGTGCTTCCTGAACTGTTGCCATGTGGAAAACCCACACTACATTGACAACTACTCACGTCTGACCTTCCCtctttccttcatcttcattaaTCTGCTCTACTGGACCTACTACCTGtacttttagtgtgtgtgtttttatgagtGTGAGGGTTTCATATCTCTGCAATATGTTACAGCAATTTGGGGATTTAATGCACTTTTCTCTTAGCATGTTTTTTGCAGATACTACATGTGACTCATGCATATAGTATGTAACTTTTACTCGTTTTGTCCTACAggatgtgtgtttatttggacTGGTCAAGGTTGTAACAGTGGATGAGTTTGGATGAGTGTTGATTCCCAAAGGTATGTTTATGTGAGAAATATGTGCCCTTTGTTTTCAGTAGAGCTTCACAAGACTACACAAGACTATCCAATGCAACTAAAAGAACGAAAGTGTGAAACAAACGTGACTATTTTAAATTCTACATATTTTAAAGCAGGatcaataatgtaataatgaataGCAAGACCAaagatttaattcatttttagtaTCTATGAATTCAAATATTTCAGTGCATGTTATTAGATGTTAGGCAGGTAGCattatatgaattatttcaGTTATTGTTATTTGAACAGTCAGTGTCATTGAGCTTTGTGATTATAAATTGCTgccttcaagaaaaaaaaatcaccaaatgatttttttcaccaAGCATGACAGTGAATCGATAACATCACTGCagtgttgtttttctgtgtcAATGACATGaccatttaacattattttcttCATCCAAAAATACCAACATAATCAGGCGAATTTCAAAAGTGAAATGAAACTTGAAACAGTTGaaagttgttattattaatattagtataaTATTTTACGCACGTATTGGTCAGCAGAAATAGGAGCtgggttttattttgtgtacatACTGAACTATATTTATTCAAAGCATCCCTCCAACTTGGTGTATGTTCTGTAGAGAGTTGCAGGCTTATGTTAGTTTTATCACTATCTTTTCTTACATTGTCCTTTGCCCTTTTTTATTAACTGCACAGAATATTCACTTGTTTTACAGATATAATGTCTTCCTACTGTACTGAATTTTGAACCACAAAGGCATTATTTATTAGCAAGAGTTTCTTATTACTATAAAGGTCTTTACAGATGTTTTGCAAGTTATATATTTCCAGTCATGCATGAGTCTTGTGCAGTGGAAATAAGCCATGTGGCTCCAGTATGTTTTTCATGCATGGGAGATTATGATGCATCAATTCCCACAGCTTGTGAGGAAGGGTGCATGGTTTTGGCTGTGGGAAGTTTTACAATAAACTAGATCATAATTGT

Function

symbol description
gabrz Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; diencephalon; eye; and telencephalon. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914694.2 True 2745 mRNA 0.43 11 12522935 12544716

Neighbor

gene id symbol gene type direction distance location
valopb valopb,LOC108273592,LOC108426422,LOC103038101,LOC107754082 coding upstream 20066 12495668 ~ 12502869 (+)
si:rp71-1c10.8 LOC108274317 coding upstream 35382 12484134 ~ 12487553 (+)
LOC117598642 LOC108273679 coding upstream 54751 12466585 ~ 12468184 (+)
znf668 znf668,LOC108426467,LOC103039553,LOC107754087,LOC107675019,LOC107743759 coding upstream 56501 12462862 ~ 12466434 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023 coding upstream 75939 12434535 ~ 12446996 (+)
adgra1a LOC108273515 coding downstream 18781 12563497 ~ 12575544 (+)
mxtx2 LOC108273977 coding downstream 49779 12594495 ~ 12596222 (+)
bms1 bms1,LOC107689949,LOC107675025 coding downstream 51657 12596373 ~ 12615218 (+)
gfra1b gfra1,gfra1b,LOC107707958,LOC107581544,LOC107755550,LOC107689950,LOC107702444 coding downstream 266931 12811647 ~ 12837383 (+)
afap1l2 afap1l2 coding downstream 480915 13025631 ~ 13056775 (+)
LOC117598562 NA non-coding upstream 69257 12451893 ~ 12453678 (+)
G195084 NA non-coding upstream 148655 12374010 ~ 12374280 (+)
G195083 NA non-coding upstream 151650 12371056 ~ 12371285 (+)
G195047 NA non-coding upstream 273180 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 346816 12174394 ~ 12176119 (+)
G195225 NA non-coding downstream 5418 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 98552 12643268 ~ 12643526 (+)
G195301 NA non-coding downstream 113389 12658105 ~ 12658323 (+)
G195512 NA non-coding downstream 299609 12844325 ~ 12844561 (+)
LOC113527319 NA non-coding downstream 519148 13063864 ~ 13066622 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 48952 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 437576 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 901666 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1236667 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1274722 11233590 ~ 11248213 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 414219 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 938585 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1468857 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1742643 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 4310973 16855689 ~ 16863495 (+)

Expression


Co-expression Network