dhrs7cb (dhrs7c,LOC107720435,LOC107653938)


Basic Information

Item Value
gene id dhrs7cb
gene name dhrs7c,LOC107720435,LOC107653938
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8899010 ~ 8906390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914717.2
AAAAGACCCCAGAGCCTAACAGGCTCTCTGTGGAGCCAGACAGAGCGAGAGCCTGGGGTCTGTGAATGGACGAGGAGGAAGAAAGGGTTTAAAGCTGGTTACCTAACAGGAAAACCTCTGACTTTTCCACTGGGGGCTTAACTCCTCACATGCACTaTGGCTATCCCATCTGTGATGGTATTGCccctgctggtggtggtgttcGCTGGAATCTACTACTTTTACAACGAGATCATCCACTTCATGTCCAAGTCCATAGTGCGGAACAAAGTGGTGGTGATTACGGATGCCGTGTCTGCAATGGGAAGTGAATGTGCCAGGATGTTGCATGAAGGTGGTGCACAGTTGGTGTTGTGTGGACCCAACTGGGATAAGCTGGAGTCTCTCCATGACTCACTGTGCAGTGGCTCAGACCCCAGTAAAACCTTTCCACCCAAGTTGGTGTTGCTGGACTTCAGTGATACAGACAGCTTGGAGGATGTGATTACAGAGATCAGTGAATGCTATGGCTACGTGGATGTGCTCATATGTAACGGCAGCATGAAGGTCAAAGCCCCAGTACAGAACCTTTCACTGGAGATGGACAAAATCATCATGGACGTCAACTACTTTGGGCCCATCACTTTGGCAAAGGGTATTCTGCCGTTAATGATTGCCAGGAGAACAGGTCATTTCGTAATCGTCAACAGCATCCAAGGGAGACTTGCTGTCCCATTTCGCACTTCCTacgCTGCCTCCAAGCATGCGGTGCAGGCCTTCTTCGACTGTCTGAGAGCAGAAGTGGAGGAGTATGGCATCTCTGTCAGTACAATCAACCACACGTTCATCAACGCTACAGCCCAGGAAGCCACCCCCTCCCAGTCTCAACCCACCAACGCCCTGTGGGCATACATTTTAAGCAAGCTAACCACTCACGGTGTGAGCCCTAAAGCCCTGGCGTGTGAGATTGTGCGAGTGGTGAACCGGAGGAGGAGAGAGGTGCTCCTGGCTCACCCCATCCCCTGGGTTGCTCTCTACATCCGCTCGCTCATTCCCAGCTTCTTCTTTTCTGTGGTGGCAGCAGGGGTGAAGGACGCGGCTATGAATCAGCAACTAAAATAGATCCATACATCACATGCTAGTGAATGACTGAGGGACTTGTGTTGTTCCTTTAACAATATAGAATGTGAGCTATAATTCTCACATTGACATATGACCTCTGATGTAATATAGGAACAGTAGTTATTTGGAGGAGGATTTTTTAGGGCTTTGTCTGAGCTATGACCTATTTGCTTTATTTGGCTGGTAAAATATCACATGCTCTGTAGTATCTGCCCTAAATATCTTGGCATGTGCTAGATTTTCCAttatttagcaaaatataatgtTGCTAAACATAGCAATTTATGGCATGGTCTGGGGAGAAGAGATTTTGGCCTCATATTAGTTCACATTTTTAGGCACTAAGTAAGATCTAATGTTTTCATGCTTGTCTTCTAGCTCATCTGTTTTTGGAAAGTTtcatcagtacacacacacacacacacacacacacacacaaacagctgccTTCAGCTGCTTGCTGACGTGGGAGCAGTTGTCTGACTGGTGGAGACAAGTTGCTTCACCTTCAGCCCCTAAAGgcaaaacacatttcacacaattGCAGAATCCTGCAGATGGCACTAGTGGACTTTTATGCTGCAACACTGGAAGAAGCAAAGTACTGCCACCTACTGAACATTGCTCACTTAAAACCAATTGAGAAACAGTACTTACACTCTATGCTTTACTTTGTGCTACTATGTGTTACTTTGTGTATCATATGATCCTTGTGGCATGCTTTCtttgtgcaataaaaaaaaagtttaggtCTTTAA

Function

symbol description
dhrs7c Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum. Predicted to be located in extracellular region and longitudinal sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005576 extracellular region cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11167 DHRS7C; dehydrogenase/reductase SDR family member 7C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914717.2 True 1859 mRNA 0.46 7 8899010 8906390

Neighbor

gene id symbol gene type direction distance location
bsk146 bsk146,LOC108273750,LOC107653993,LOC107719718,LOC108424854,LOC791840 coding upstream 52329 8836049 ~ 8846681 (+)
wu:fj29h11 LOC108273747 coding upstream 64554 8791190 ~ 8834456 (+)
LOC113527546 LOC108274314,LOC108413941,LOC108443187 coding upstream 109267 8786292 ~ 8789743 (+)
si:ch211-176g6.2 LOC108274352 coding upstream 118165 8754318 ~ 8780845 (+)
tob1b LOC108274231,LOC107595632,LOC108443190,LOC107719743,LOC107653989,LOC103025012,LOC107693641,LOC107562678 coding upstream 268653 8626799 ~ 8630357 (+)
hs3st3l LOC108273751 coding downstream 21415 8927805 ~ 8940831 (+)
LOC113527204 glp2r coding downstream 107263 9013653 ~ 9025559 (+)
pts pts,LOC107081163 coding downstream 123862 9030252 ~ 9035170 (+)
LOC113527360 LOC108274022,LOC108424857,LOC105888776,LOC107653912 coding downstream 134434 9040824 ~ 9090546 (+)
trnaa-ugc_7 NA coding downstream 201296 9107686 ~ 9107757 (+)
LOC117598667 NA non-coding upstream 297240 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 383076 8514382 ~ 8515934 (+)
G192737 NA non-coding upstream 510893 8310878 ~ 8388117 (+)
G192716 NA non-coding upstream 628784 8269148 ~ 8270226 (+)
LOC117598703 NA non-coding upstream 637587 8259214 ~ 8261423 (+)
G192858 NA non-coding downstream 11650 8918040 ~ 8918245 (+)
G193170 NA non-coding downstream 151009 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 251769 9158159 ~ 9158568 (+)
G193168 NA non-coding downstream 253043 9159433 ~ 9184089 (+)
G193386 NA non-coding downstream 472883 9379273 ~ 9380115 (+)
G192484 ank3 other upstream 1270899 7605981 ~ 7628111 (+)
tfam tfam other upstream 1462638 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2062627 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2170619 6725321 ~ 6728391 (+)
G191581 NA other upstream 2915773 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 362103 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 461853 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 605779 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 606170 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 606394 9512784 ~ 9515616 (+)

Expression


Co-expression Network