ca10a (ca10,ca10a,LOC107584395,LOC103361575)


Basic Information

Item Value
gene id ca10a
gene name ca10,ca10a,LOC107584395,LOC103361575
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22508418 ~ 22701836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914735.2
cacacgctCCTTCAGTCTCTCCCacccctctctcactctctgactctctctgcaGGATCGGGACGGCTCCATCATGTCCGCGGCGCGTCTCAGAGCCTCTCCGGGAAACTAAAGCGCGCACCCTTTTAAAGTgcgggtgttttttttgttgttgttgttgttgttgttgtctggAGCTCGGCGAGGACGCGGAGAAACGCCAAGTGAAGCACATGCGTGGAGGATTTTAGTGGATTTTTGAGTGCGTTTCTGAAGCGCGGCGTCATGTCTCCGAGATAAACGCgcctctctctcagtgtgtgtgagtgtgagtgtgtgtgtgcgtgtgtgtgtgtgcgcgcgcgctcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttaccTTGTGGAAGGTGTGCAACGGGAAAGACGCTGGCTGGACTCGACATCTGCAACTGATCTGCCGTGTTTCTGGAGCACCATGTCCCTGGAATGAAGGAAGAAAATCAAACATGGATATAATCTGGGAAATACTGATTATTCTTCAAGCCAATTTCATCGTTTGTACAACAGCTCAGCCAGGTCCCCCCAAAATTCATGAGGGATGGTGGGCGTACAAAGAGGTCGTACAAGGGAGCTTTGTTCCAGTTCCATCCTTCTGGGGTCTTGTGAATTCAGCATGGAACCTGTGTTCGGTGGGAAAGAGACAGTCTCCAGTCAACATTGAGACCAGCCATAtgatatttgacccctttctgACACCACTGAGACTGAACACTGGGGGCAGGAAGGTGGGAGGGACCATGTACAACACCGGCCGCCACGTCTCGCTACGTCTGGACAAGGAGCACTTGGTGAACATCTCGGGCGGACCGATGACTTACAGCCACCGACTGGAGGAAATCAGGTTACACTTTGGCAGCGAAGACGGACAGGGCTCGGAGCATCTCCTCAACGGCCAGGCCTTCTCCGGGGAGGTACAACTGATCCACTACAACCACGAGCTCTACACTAATTATACAGAAGCTGCAAAGAGTCCAAACGGCTTGGTGATAGTGTCTATATTCATGAAGATATCCGAGACTTCAAATTCCTTTCTGAATCGGATGTTGAACAGAGATACCATCACTAGAATAACATATAAGAatGATGCTTATTTACTATCTGGGCTAAATATCGAGGAGGTGTATCCCGAGACATCGAGTTTCATCACCTACGAAGGATCGATGACTATCCCTCCATGTTTTGAGACTGCGACATGGATTCTCATGAACAAGCCAATATATGTCACAAAAATGCAGATGCACTCCATGCGGCTGCTCAGCCAGAACCAGCCTTCGCAGATCTTCCTCAGCATGAGTGATAACGTGCGTCCGGTCCAGCCTCTGAACAACCGCTGCATCCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGTCCCAACAACAGGGCCCAGAAGCTGCAGTACCGAGTGAATGAATGGCTGCTGAAATAGACCCCTTTCATGGATGAGCCCAAATATAAAACAAGACAccgagaggggggaaaaaaggatgaaaGACGGCGGAGGAGCAGAACGGACTCTAGACTGCATCACATTTGTCCTGCCAGATAGTCATGACAttgtaaagggaaaaaaaagagaaaaaaaataataaataataacttcaATAAGAAGAGACTTTGGCAAAAAAGACTCTGTTTCATACATCAGCTCAAAACCAGTGAAGTACAAATAGGTTTTGATactttttttggtgaaaaaaaaagaaaaaaagcgaAACCATAcaaaaattgaaatatttatttcatattcacTTCACAAAATGGAACTCAAGATGTCTTTTTAACCTTTGTACATATGGATCCCTTACTGCAAAGCGTTCAAACCTTCAACAACAGGATGGACATTAAGCTGGAGACTGAAAGTGGGAGCATCCTCATAACTGCATTGTCTTAATCATAACTCCGGGACACAGCGGAGAGGACGAGAGAACGAGAGAACGAAAGGATGAGAGGATGACAGGACGACAGGATGACAGGATGACGGCTGCCGCGCTAATGACACTACAGAGGAATGTAcatgaaagctgtttttgaggCACAATGAGGGTTCTGGCCTTGTAAATAGAATTATTCATGCTGAAAATTAACATGTAAAGatacaaataaacattaaaaaagaatatatcAGAGggaaaaataactgaaaaaaaagcgTTGAATATTTTATGCTTGGCACACTGAATTTCTGGAGGAGAGCTGatgcctttttttctgttttattgtttacaatGGTCCTacactgtgtttgtttaatgttatcGGCCCAATAAATGTGTTTGGAACGTC

Function

symbol description
ca10a Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including cardiovascular system; eye; gill; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).
ca10 Predicted to enable hydro-lyase activity. Predicted to be involved in one-carbon metabolic process.

NR:

description
carbonic anhydrase-related protein 10-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914735.2 True 2338 mRNA 0.46 9 22508418 22701836

Neighbor

gene id symbol gene type direction distance location
LOC117598678 NA coding upstream 265643 22240505 ~ 22242775 (+)
LOC113527641 NA coding upstream 304389 22201501 ~ 22204029 (+)
LOC113527624 NA coding upstream 381772 22124336 ~ 22126646 (+)
si:ch211-119c20.2 LOC108274060 coding upstream 419148 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 472793 22029089 ~ 22035625 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 105343 22807179 ~ 22847566 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding downstream 147467 22849303 ~ 22853496 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding downstream 430647 23132483 ~ 23167487 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding downstream 537461 23239297 ~ 23265400 (+)
LOC113527736 NA coding downstream 613757 23315593 ~ 23321228 (+)
G200807 NA non-coding upstream 160300 22347890 ~ 22348118 (+)
G200784 NA non-coding upstream 266106 22124233 ~ 22242312 (+)
G200779 NA non-coding upstream 393596 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 508526 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 519664 21988186 ~ 21988754 (+)
G201019 NA non-coding downstream 165072 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 401448 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 402840 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 566791 23268627 ~ 23269419 (+)
G201234 NA non-coding downstream 673238 23375074 ~ 23380990 (+)
LOC113527202 NA other upstream 481937 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 496114 22008511 ~ 22012304 (+)
G200571 NA other upstream 505144 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 1007489 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2941734 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 96306 22798142 ~ 22871284 (+)
G201154 NA other downstream 503830 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 570738 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 609424 23311260 ~ 23318154 (+)
G201214 NA other downstream 622237 23324073 ~ 23329571 (+)

Expression


Co-expression Network