hpdl (hpdl)



Basic Information


Item Value
gene id hpdl
gene name hpdl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24267278 ~ 24273823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026914779.2
GATACTTGAAGACACGCCCACTCTGCTTTGCGTCATCCAACATGGCGGCATACTTGAGCCGGTTGCACCACATCTCACTGCACGTTTCTAACGTGGATAAACTGGCTCAGGACCTGGTGTCTAAGCTCCAGTTCAGCGTGTTCGCCGCCAGACTGACGGCCGGAGCTCGGCAGCTCGCCTTCCGCAAGGGAGCCGCGGTGTTCGTGCTCACGGAGAGACCGCGCTGCGGCGGAGAGGCGGCGCTGCTGCTGGAGCACCGGAACCGGCGGCTCGCTCATTCACACGGGGACCATGTCGGTCCGGGACGCGTCGGTACCGTCCTGTACGACGTGCAGCCGCACTACTCGGTGGATACCGCGTGCAACGTGTGCTTCCAGGTCGAGGACGTCGAGAGGTCATCGGAGTCGCTGCGCGCGCGCGGCTGCGACTTGCTCGTGCCGCCGACGCGCGTCCATGACGACGGCGGTCTCGTGACTTACTCGGTCGTGAAGTCCATCGTGGGCAACGTCTGCCACACGCTCGTGGATACGAGTCGGTACCGAGGGCCCTTTCTGCCCGGATTCTGTGAGGTCGGGACCGGAGCCGAGGCGGAGGAGGACACGCGGTGTCCCGTGACGCATTTTGATCACGTCACGTACGCGTGTCCGAGACGCAGCACGGCCGAGGTGATGCGCTGGTACGAGAGGAACTTCGGCTTCCGGAGGTTCTTCATCAGCAGGAAGGAGGACGCAGAGGAAGGCTACGTGTTGGATGAGGACGGAATCAGTCTGCGTCTGACCGCCATGGAGTACTGGAAATGCAGCGAGACGGGAATCAAGCTCCCTTTTAAAGACAGGAAGGAGCCGGACTGCAAGTTCGTCATCGCTGAATCTCTGCCTGAGCAGGGCAGGAATCAGGTGGACACGTTTCTGGAGCAGCATGGCGGTCCGGGCATCCAGCACATCGGCCTGTTCACGCAGGACATCGTGTCCACAGCACATACCATGGCCAACGCCGGCGTTCAGTTCTTCTCTCCTCCTGCGGCCTACTACACCGAGGTGGGGAGGCAGCAGGAGATCGAGGAGGCGGGGCATGATCCGAAAACGCTGATGCAGCACGGCATCCTGTTAGACACAGACCTCCGGGTGAATGGCGATGATCCGAGCGCATGCAGTAAGAGctACCTGCTGCAGGTGTTCACCAAGCCCATCTTCTCCGAGGACACATTCTTCCTGGAGCTGATCGAGCGCCGTGGAGCCACCGGGTTCGGAGAGGGCAACATCCGAGCTTTATGGAGATCCGTTCAGTCTTACATGGAGAAGAACGAGGGTGATCAGGGGCACTCAAATACTAAAAGCAAGCAAACTGGACAGCACTGAGGTCTGACCAAGTGAACACCTCATCAGattaattaaatatgttaatttatGCAGGACATGCTCTCTATTTATAACTCTGGCACTTGACACTCCTGTAAAAATAACCTGTGTGGTTTTGGTTAAACTCTTGTTTTTGTAAAACTCTaatatgtatttcatttttgagaagtaaaaattaaattttctcCAAGCtgca

Function


symbol description
hpdl Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within aromatic amino acid family metabolic process. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human HPDL (4-hydroxyphenylpyruvate dioxygenase like).

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like protein isoform X1

GO:

id name namespace
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function

KEGG:

id description
K24788 HPDL; 4-hydroxyphenylpyruvate dioxygenase-like protein

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026914779.2 True 1554 mRNA 0.57 5 24267278 24273823

Neighbor


gene id symbol gene type direction distance location
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding upstream 32194 24132906 ~ 24235084 (+)
mmp21 mmp21 coding upstream 186666 24067539 ~ 24080612 (+)
uros uros coding upstream 202294 24047563 ~ 24064984 (+)
ablim2 ablim2 coding upstream 667146 23541024 ~ 23600132 (+)
si:dkey-219e21.4 LOC108273735 coding upstream 795049 23466357 ~ 23472229 (+)
fam53b fam53b coding downstream 11258 24285081 ~ 24323614 (+)
oat oat,LOC107569518,LOC107684577 coding downstream 106478 24380301 ~ 24398447 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding downstream 265467 24539290 ~ 24589833 (+)
LOC113527709 hmx2 coding downstream 395395 24669218 ~ 24674576 (+)
bub3 bub3 coding downstream 403361 24677184 ~ 24685154 (+)
G201782 NA non-coding upstream 30499 24203862 ~ 24236779 (+)
G201814 NA non-coding upstream 41652 24224878 ~ 24225626 (+)
G201793 NA non-coding upstream 110313 24156506 ~ 24156965 (+)
G201753 LOC108274257 non-coding upstream 224035 24038938 ~ 24043243 (+)
G201604 NA non-coding upstream 406302 23775381 ~ 23860976 (+)
G201843 NA non-coding downstream 63201 24337024 ~ 24338068 (+)
G201844 NA non-coding downstream 64311 24338134 ~ 24338730 (+)
G202007 NA non-coding downstream 206434 24480257 ~ 24482442 (+)
G202115 NA non-coding downstream 401859 24675682 ~ 24676158 (+)
LOC113527734 NA non-coding downstream 515497 24789320 ~ 24791405 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 578861 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 868615 23272574 ~ 23398663 (+)
G201214 NA other upstream 937707 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 949124 23311260 ~ 23318154 (+)
G201154 NA other upstream 1060899 23205666 ~ 23206379 (+)
G201962 NA other downstream 107964 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 181836 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 387221 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1055386 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 1223892 25497715 ~ 25498919 (+)

Expression



Co-expression Network