slc9a3r1a (slc9a3r1)


Basic Information

Item Value
gene id slc9a3r1a
gene name slc9a3r1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 16901393 ~ 16923228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914790.2
AAGTCTTCTTAAGTTGAAGAAGTTGGGGGAAGTGTCGCACATCATCCTTCACCCGACTACTGACTACATGGGAACTTTTCTCCACAGGTTTCCCTGGGAAGTGAAGAGTTTTTAACTTTCTCTGAGCGCCCTGTCGGCTTCCTTTCACTTTAATCCTCGTGTAAATCTGTGTTTGTGCGCGTCCCTGTGTGTCAGTTGTAGTTGAGGGCGATGTCAGGCGAGCTGAGGCCCCgactgtgtgtgttagagaagggCAGCGACGGCTATGGCTTCCACCTGCACGGCGAGAAGAACAAAGCGGGTCAGTTCATCCGCCTGGTGGAGCCCGGCTCCCCGGCCGAGCTGTCTGGTCTGAGGGCCGGGGACAGACTGACGTTCGTTAACGGTGAGAGTGTGGAGGGAGAGAGCCACCAGCAGGTCGTGTCCCGGATACGAGCTGTAGCGGGCCCGCTGGAGCTTGTCGTCGTGGACCACGAGACGGCTGAGTATCTCAGAAAACACAACCTGCCATGCAGGAAGGAGTTCGTCAGTGACGGAGTGCCGACACCGGGAGAGCAGCCGGACACCGCCGCCCGGGAGAGGAACGGCACCTCCACCGCCTCGGAGTCCAgccctgtccctgtccctgatcctgatcctgatcctgtccctgtccctgccTCTGTCCCTGTTCCTGCCGCTAACGGAGACATGGACCTCGACACACTCAGCCTCAGCTCCAAGGAATCGAAGAATGAGCTTCGCCCTCGTCTCTGCCTCATGAAGAAGGGAGCCACAGGTTACGGCTTCAACCTGCACAGTGAGAAGTCCAAATCAGGCCAGTATATCAGGGCGGTGGACGAGGACTCCCCAGCTGAGAAATCTGGACTTCGACCCCAAGATAAAGTAGTGCAGgtgAATGGCTTGCCTGTTCAGGGCTTGCAGCACTCGGAGGTGGTGGCTGCCATCAAGGCAGGAGGAGATGAGCTGCGGCTGCTGGTGGTGGATCCAGACACGGAAGCTTTCTTCAGCAGCTGCCAGGTTCTTCCCACTGAGGAGCACCTCACAGGCCCTCTTCCTGAACCTGCTGCCAGCAGCGACACTGATGAAAAGGTGAAGGAGGAAGAAGTAAAGGAAGCCAAGCCGGCGTCAGCGAGTCCTACTCCATCCAACGCTTCCTCTACTGCATCTATCCCTGCCGAGATGGCCAGCAGTCCCCCATCACAGCAGGAGAAGGCAGTAGAGAAGAGCGCGAGTGAAAATGCAGTCTCATCGCTGGATCTGAACATTTCCCTGCAGCAGGCTAAAGAGCGCGCGCACCAGAAACGCTCCAACAAGAGAGCGCCACCTATGGACTGGAGCAAGAGGAGTGAAGTGTTCAGCAATCTCTAAGCAGCAGTTTTCTCCACCACTATCACACTTCTTTATACttcctttatttataaagttcacatttctgtctcactcatGAGGCCAGCTCTGAGTTATATAGACAGCTATAAAGCAGAAGGGATGCAGGAAAAAGACAACTTTTCCTGGATTAATAAGGcatgaaatcacattttagaaataattgctggatgtttttttttttttttttttttccacgatTTGTTAGTCTCATCCattcaaacacatacacacccctcAGATGAACATTTAAAGCCAGTGTTATTTTGTCACTTGTGTTTTTACTGATCTTTATagacattttattgaaatatgCTAGAAATCAGATTTGTGATTTGGTATTACTTTATTATGTACAGTGTAGATTTAATTAATGCACAGTTCTTTTCCTGTTCACATTGTTCATAAAGGTGTGTATTAGCATCACTGACTGttcattatactgtacatgcacCTGCCCTGCTGAAATAACCGTTAATGTTCAGAGCAATTTTAATCCCTTAATATTACTGTAAAGAATGACAGTTTATAATGCTGTGTGGTGTGAAAGCTTCGTCTCTGTGATCTATTCAgaaagtccttttttttttttttttttagagctgtAAATCATAAATGATTATGAATAAATCCCTAAAATGGAGCTGTACATTCTGACTAACATGGAACATTAGCTATCTGACTGAAGGAAGAAAAGCACTGTTTTTTAAATCGTTTGTGTAAATGAGTCTTAATGATATAATAATCACATTCATGCAAAGTAATATGGCACATCGTACTTCTGATGAAacagctttgattttttttttccttaagcACAATGTCATCGCctcattgtttaattttttatgtttgcaATTTATGTTTGGTTCAGAATTTTTAGTgtgttgaaatgaaatgaagagaaatgaaaggATTTTTATGAACATTCCTAAGAAGAAAACCACTGTCTTTAGCAACTTTAGGTGCAAGCTCAGTCTAGACTTAgctggataaataaataaaaaaagaaaatgta
>XM_026914791.2
TGAAGTCTTCTTAAGTTGAAGAAGTTGGGGGAAGTGTCGCACATCATCCTTCACCCGACTACTGACTACATGGGAACTTTTCTCCACAGGTTTCCCTGGGAAGTGAAGAGTTTTTAACTTTCTCTGAGCGCCCTGTCGGCTTCCTTTCACTTTAATCCTCGTGTAAATCTGTGTTTGTGCGCGTCCCTGTGTGTCAGTTGTAGTTGAGGGCGATGTCAGGCGAGCTGAGGCCCCgactgtgtgtgttagagaagggCAGCGACGGCTATGGCTTCCACCTGCACGGCGAGAAGAACAAAGCGGGTCAGTTCATCCGCCTGGTGGAGCCCGGCTCCCCGGCCGAGCTGTCTGGTCTGAGGGCCGGGGACAGACTGACGTTCGTTAACGGTGAGAGTGTGGAGGGAGAGAGCCACCAGCAGGTCGTGTCCCGGATACGAGCTGTAGCGGGCCCGCTGGAGCTTGTCGTCGTGGACCACGAGACGGCTGAGTATCTCAGAAAACACAACCTGCCATGCAGGAAGGAGTTCGTCAGTGACGGAGTGCCGACACCGGGAGAGCAGCCGGACACCGCCGCCCGGGAGAGGAACGGCACCTCCACCGCCTCGGAGTCCAgccctgtccctgtccctgatcctgatcctgatcctgtccctgtccctgccTCTGTCCCTGTTCCTGCCGCTAACGGAGACATGGACCTCGACACACTCAGCCTCAGCTCCAAGGAATCGAAGAATGAGCTTCGCCCTCGTCTCTGCCTCATGAAGAAGGGAGCCACAGGTTACGGCTTCAACCTGCACAGTGAGAAGTCCAAATCAGGCCAGTATATCAGGGCGGTGGACGAGGACTCCCCAGCTGAGAAATCTGGACTTCGACCCCAAGATAAAGTAGTGCAGgtgAATGGCTTGCCTGTTCAGGGCTTGCAGCACTCGGAGGTGGTGGCTGCCATCAAGGCAGGAGGAGATGAGCTGCGGCTGCTGGTGGTGGATCCAGACACGGAAGCTTTCTTCAGCAGCTGCCAGGTTCTTCCCACTGAGGAGCACCTCACAGGCCCTCTTCCTGAACCTGCTGCCAGCAGCGACACTGATGAAAAGGTGAAGGAGGAAGAAGTAAAGGAAGCCAAGCCGGCGTCAGCGAGTCCTACTCCATCCAACGCTTCCTCTACTGCATCTATCCCTGCCGAGATGGCCAGCAGTCCCCCATCACAGGAGAAGGCAGTAGAGAAGAGCGCGAGTGAAAATGCAGTCTCATCGCTGGATCTGAACATTTCCCTGCAGCAGGCTAAAGAGCGCGCGCACCAGAAACGCTCCAACAAGAGAGCGCCACCTATGGACTGGAGCAAGAGGAGTGAAGTGTTCAGCAATCTCTAAGCAGCAGTTTTCTCCACCACTATCACACTTCTTTATACttcctttatttataaagttcacatttctgtctcactcatGAGGCCAGCTCTGAGTTATATAGACAGCTATAAAGCAGAAGGGATGCAGGAAAAAGACAACTTTTCCTGGATTAATAAGGcatgaaatcacattttagaaataattgctggatgtttttttttttttttttttttccacgatTTGTTAGTCTCATCCattcaaacacatacacacccctcAGATGAACATTTAAAGCCAGTGTTATTTTGTCACTTGTGTTTTTACTGATCTTTATagacattttattgaaatatgCTAGAAATCAGATTTGTGATTTGGTATTACTTTATTATGTACAGTGTAGATTTAATTAATGCACAGTTCTTTTCCTGTTCACATTGTTCATAAAGGTGTGTATTAGCATCACTGACTGttcattatactgtacatgcacCTGCCCTGCTGAAATAACCGTTAATGTTCAGAGCAATTTTAATCCCTTAATATTACTGTAAAGAATGACAGTTTATAATGCTGTGTGGTGTGAAAGCTTCGTCTCTGTGATCTATTCAgaaagtccttttttttttttttttttagagctgtAAATCATAAATGATTATGAATAAATCCCTAAAATGGAGCTGTACATTCTGACTAACATGGAACATTAGCTATCTGACTGAAGGAAGAAAAGCACTGTTTTTTAAATCGTTTGTGTAAATGAGTCTTAATGATATAATAATCACATTCATGCAAAGTAATATGGCACATCGTACTTCTGATGAAacagctttgattttttttttccttaagcACAATGTCATCGCctcattgtttaattttttatgtttgcaATTTATGTTTGGTTCAGAATTTTTAGTgtgttgaaatgaaatgaagagaaatgaaaggATTTTTATGAACATTCCTAAGAAGAAAACCACTGTCTTTAGCAACTTTAGGTGCAAGCTCAGTCTAGACTTAgctggataaataaataaaaaaagaaaatgta

Function

symbol description
slc9a3r1 Enables several functions, including PDZ domain binding activity; beta-catenin binding activity; and signaling receptor binding activity. Involved in several processes, including establishment of Golgi localization; establishment or maintenance of epithelial cell apical/basal polarity; and regulation of signal transduction. Located in apical plasma membrane; microvillus; and perinuclear region of cytoplasm. Implicated in hypophosphatemic nephrolithiasis/osteoporosis 2.

NR:

description
Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914790.2 True 2407 mRNA 0.46 6 16901395 16923228
XM_026914791.2 False 2406 mRNA 0.46 6 16901393 16923228

Neighbor

gene id symbol gene type direction distance location
narf narf,LOC107581643 coding upstream 1663 16890364 ~ 16899730 (+)
ddit4 ddit4 coding upstream 32964 16866210 ~ 16868429 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding upstream 117687 16778289 ~ 16783706 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding upstream 124065 16771237 ~ 16777328 (+)
zeb1b zeb1 coding upstream 1145994 15695763 ~ 15755399 (+)
asb3 LOC108274349,LOC108430683 coding downstream 99497 17022725 ~ 17028922 (+)
nrxn1a LOC108274166 coding downstream 201956 17125184 ~ 17274561 (+)
fshr LOC100304505,LOC108430642 coding downstream 393036 17316264 ~ 17326970 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding downstream 544908 17468136 ~ 17473825 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding downstream 556995 17480223 ~ 17487726 (+)
G197726 dnai2,LOC107654551 non-coding upstream 137066 16764008 ~ 16764327 (+)
LOC117598690 NA non-coding upstream 137591 16758108 ~ 16763802 (+)
G197660 NA non-coding upstream 402448 16498714 ~ 16498945 (+)
G197659 LOC108191637,LOC106904820 non-coding upstream 402732 16498435 ~ 16498661 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding upstream 851501 16049596 ~ 16049892 (+)
G197803 NA non-coding downstream 20718 16943946 ~ 16954011 (+)
LOC117598668 NA non-coding downstream 107522 17030750 ~ 17043247 (+)
G198007 NA non-coding downstream 404546 17327774 ~ 17327950 (+)
G198008 NA non-coding downstream 422788 17346016 ~ 17348598 (+)
G198041 NA non-coding downstream 478177 17401405 ~ 17403628 (+)
anapc16 anapc16,cj104 other upstream 37898 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2577112 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 2867250 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3342308 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 3879398 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 622565 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 1231917 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1518658 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1882849 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 2603414 19526642 ~ 19566684 (+)

Expression


Co-expression Network