dlx4b (LOC108274309)


Basic Information

Item Value
gene id dlx4b
gene name LOC108274309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6637355 ~ 6646574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914793.2
tttttggaaatacgCGGTTCCTCGTTTGCCAAGCTGTCATTCCAATGGATTAGATTTAAGGTTTCGCGCTCGCGCACTAACCGGCCAACAAACTTTGACGCTGTCCGTCACTTTTATGGCCTCTGCTTCCAATGATGTCTATGAGCTTCGCGCCTGACGGCTTAGGTTCTGCGGATACGTCCAAATCGGCGTTTTTAGAGCTCGGCCACGGGATCCCCGCCAGCCAGCAGCACTTTTCGGGACTCGCGACTAACGTTTACCCCGCGCACGGGCTGCACTCGGGAGGACACCCGCAGCACGAGAGTCCCTTTCCCTCCGGCGCGTGCCACTACGGCGGGCCGCTCGGTTACGGCTACCCCGCGCCGCTCAACGCTCCTGCACCCGCTCCTACTTACTTACCCTACCAGCAGGGCAGCTACAGAAACCCACTGAGCCACGCGAGGAATGACGAGACCGatcaCGAGAAGCAGCCAGTGATTGAGAACGGAGAGATCCGTGTGAGTGGTAAAGGGAAGAAGATGCGCAAACCGCGCACCATCTACTCGAGCCTGCAGCTCGCCGCGCTGCATCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCGGAGAGAGCGGACCTGGCAGCCAAACTGGGCCTCACACAGACGCAGgttaaaatATGGTTTCAGAATAAGCGCTCCAAATATAAGAAGATCATGAAGCACGGCCCCACCGGACCTGAAGGAGATCTGCAGGCCGCCCGTGCGCATGCGCAGTCGCCCTGCTCTCCTGTGCTGCCAGCTCTCTGGGACGCGCCGATGGCTGGCAAAAGCGCGCACACGCATCCCGGCGGCTACATGAACAGTTTCGGCCAGTGGTACCCCTCATCCCAGGACACTTTACCCAGACCTCATATGATGTGACTCATGTGTGTTTGCTACCGACATTCTACCGGTATAGTGATTATACGACATGTGTCATATCGTGTAATACTGCATATCGATACAAAGTCGCGTCGGCAGGTTTCCCGTTTTCTGAGCGTTTGTGTTTGACCTCCATGTGAGAattcttttattaaagtgtaaatACGGTCGTGTGTTTAAAGGGCTTGTGACTTTATCCTTGAACAGGTTTTGTTGTCAATTGCTTGTTGATATTATTAGTCATCGGTGCTTTTCGGTTTTTATTCAGACTccattaatatttgttttgaatAAAAGGACTGATGAAAGGCTGCCAAACACTGTGTCGCCATGCcatgtgattaaacaaaattGTTGCCGAAGAAAATTCTGGATGAAgtccagacaaaaaaacactcaaaaaacACTCAATTAAACACAGATTAAACTCGCGACACAACATCTACTTCACTTCCCCTTTTTACTCAGGACTTTCAGTTCACTGAGCACTCTGCTAAAAAATATCTCCTATTTCTACACCATGTCTACTCACAAGACTTGCTGAAGAGTAACTCTATAATTCAggttaaaataacataaaattggAGCTTATTGGACTTTATTTGGCTTAATATTCTCTGCATTTGTGTTTTGCATCAAGCCTGACACATTATCCTTTAACTAAGCCTAACTTAATCCATGACCCAAATGATTTCATGTAATACAAATTGCTGAACACTTTCTACAGAATTCTATAATGTGACTTCAGAAATCATTTTAGAGAACACACAAATActgtaaaaatcacattcatTTCACAAGTTACGCCCCGAAACTGCACATTCTGTGAATTCAAGTAAACACATGACATGATGTCAAAATGttcaacacatttttcacaattaatgactgtacctttaatttcagatgtgatttttaaaaaaataattcatttattttcacatgttaatttttcacttATATTGcacacttttattttcacatgtgataataaatgtatgatgtgagaaaatcacatctgaGAAATTAAACTATATTCATCCTGTAtgtgaaatgtaaatgcatcatgTGAAAGAAAATCACACGTGAAAATCAAAGCACACGCACTGCACGTGACaaattaatgtgaaaataaaataaacttggAGAAAAATCACGtttcaaataataatacatgcacTATAATGTGCAAAACGTCACATGTAGTGTTTAAAAGACACATTGTGATGTTTTCATCTGTAAATTCTTGTAATTTTTTCCTGTAAGGGaattacattataa

Function

NR:

description
PREDICTED: homeobox protein Dlx4b-like

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914793.2 True 2183 mRNA 0.44 3 6637355 6646574

Neighbor

gene id symbol gene type direction distance location
abi3b LOC108273397 coding downstream 124270 6507850 ~ 6513085 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding downstream 132626 6465015 ~ 6504729 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 176996 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 201349 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 337376 6285060 ~ 6299979 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 81007 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 100478 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 110211 6756785 ~ 6766100 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 189863 6836437 ~ 6847966 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding upstream 400997 7047571 ~ 7232075 (-)
G192014 dlx3 non-coding downstream 14712 6621470 ~ 6622643 (-)
G192012 NA non-coding downstream 91102 6545032 ~ 6546253 (-)
G191947 NA non-coding downstream 148616 6463488 ~ 6488739 (-)
G191950 NA non-coding downstream 156186 6479767 ~ 6481169 (-)
G191949 NA non-coding downstream 158538 6478189 ~ 6478817 (-)
G192070 NA non-coding upstream 143292 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 149537 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 153068 6799642 ~ 6800076 (-)
G192075 sgms1 non-coding upstream 161631 6808205 ~ 6809758 (-)
G192074 NA non-coding upstream 166591 6813165 ~ 6815435 (-)
itga3b itga3 other downstream 42965 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 846085 5768528 ~ 5791270 (-)
G191430 NA other downstream 1023401 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1146430 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1573937 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 753426 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 934776 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 954644 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2201088 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2721643 9368217 ~ 9419487 (-)

Expression


Co-expression Network