epas1a (LOC108273968)


Basic Information

Item Value
gene id epas1a
gene name LOC108273968
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17796028 ~ 17822290 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914794.2
ACGCGTGGCCCGGAGAGCTTTCGACCTTAAAGCGCTCGCGCCTCCCCGCCTGCTTTCCACCGGAGAGGCAGTGCAATCCTCGGCAGTGCTCTGAGACTGCACTTTACTACTCCGACCTCTCATCAAATGAGCTCAAACCCAGAGCATGGACATTTCAGATTATAAATAACGACGACGCTGGAGCTGGATATTGACGGGTTTTGCGCGTAAAACATTTTCCCCGAGAGTTTTCTCAACTGCCTGATTTAGGGTTTGGAACAGGAATTAACCATGGCTtctgagaaagagaagaagagACATCCTTCAGAACGACGGAAAGAGAAGTCGCGTGATGCAGCGCGTTGCAGACGGAGTAAGGAGACGGAGGTGTTCTACGAGTTGGCACATCAGCTGCCTCTGCCTCATAGTATCCGCTCACACCTGGATAAAGCGTCCATCATGAGACTGACCATCAGCTTCCTCCGTACACGCAAACTTCTCACATCAGGATGCTTGAGCAGACAGCTAAAGGACGACCCACAGATGGACACTCTGTATCTGAAGTCTCTGCAAGGCTTTGTTGCCGTGGTGACGTCAGAAGGAGACATGATCTTCCTCTCAGAGAACATCAGTAAATTCATGGGTCTCTCACAGGTGGAATTAACAGGACACAGCATTTATGATTTCACACACCCTTGTGATCATGAGGAGATCCGAGAGAACCTCAGTGTCAAAGCAGGGCCGGTGTATGGCAGGAGACATAAGGAGTTGAGCACAGAGAGAGATTTCTTCATGAGGATGAAGTGCACTGTCACCAACAGAGGACGCACAGTCAACCTTAAATCAGCCAGCTGGAAGGTGCTGCACTGCACAGGGCATTTAAAGGTATACCCCAGCCGGCCCCCTCATATTTTGTGTGGGTTTGCTGAGCCCCCCCTGACTTGCCTGGTAGTGATGTGTGAGCCCATCCCTCATCCATCCAGTGTGGACACACCAATTGACTGCAAGACCTTCATGAGTCGACACAGCATGGACTTGAAGTTCACCTACTGTGATGAGAGTGTGAGAAATCTGATGGGCTACACACCAGAGGACTTAGTGGGGCGCTCTGTCTATGACTTCTACCATGCACTGGACGTGGACACGATGACTAAGAGCCACCAGAACTtgtgtgctaAGGGCCAGGTGGTGAGTGGTCACTATCGAATGTTGGCTAAGCATGGTGGTTACGTATGGGTGGAGACACACGGCACGGTCATCTATAACAGCCGCAACTCTCAGCCACAGTGCATCATGTGCATCAACTACGTCTTAAGTGACGTTGAAGAGAAGTCCACTGTGCTCTCCATGGACCAGATGGAGTCGTTTTTCAAACCTCGAAACATGCTGGTCACCAGTGAACTCTTCTGCCAGGGCTCAGAAACATCTAACATGCCCTTTACCAAACTCAAGGAGGAACCTGAAGAGGTGCCGCAGCTCGTGCCAACACCAGGAGAAGCGATCATTGCCCTGGACTTTGGAAGTCCAGAGTTTGAAGCTCCTGCTACCTTCTACAAATCTCCTAGTCAGGCTTCAGTCAATAAGCTGTGGGAAACTGAGTCTCCACAGCATAGCTCTGACAGGGGCCTGGCCAAATCTTCATCCAGCCCAACTACAACCCTGAGCAACAGTGGCAGCTCCACCCCTGATAGTACAGGAGGAGATTACTATGACAGTGAGGAGACTGAGCTGAAGGTTGAGCTGACAGAAGGCTTTTTTGCGCAGGACACTGACAATGAACAGTGGAACTTCAGTGATCTGGACTTGGAGACATTGGCTCCCTACATCCCCATGGACGGTGAGGACTTCCAGCTCAACCCCGTTGCTCAGGATGAGTCCTTACCTGAGTCCAGCTCAAACCTTTGTGCCCAGCCTCAGTATAAGTTCAGCAATGTGACGAGCCTCTTCCAGCCTTTGGCCCACCCCACTTCTGAAAACAAGAACTGCCCCAGCTCCTACCCTGAGATACCACTCGTTCCTGCTTACCAGGCTCCTCCAAGTATCCCGCACTCGTCCGGAGCAGGCATGCGCCTTGATCAGATTACTCTGGCTAACAGTTTCAAACGCAAGAGACAGGATGAATTTGTTTCTTCCTGCTCGTTTCCAGATATTCCTCAGTGTATTAGGCAGGATGGAATAAGTCGCAGTGAGTCAGTAGACAACGTGTGGAAGCGAATGAAGACAGCAAACACAAATGGGTGTGCCTTTTCTACCAGGAAACCCCCTGATCCCATAGACCTCTTCTCAGCTGGGCTAGTAGGCAGGCATTATCAGCCTATTCGTTGTCGGCCTCCTCCAGATCCCCGGATCTCTGGAGAGCTCAAACAGCCTTTTACTGAGCGCTTCTGCTCTTCAGCGTACAGTCCATATGGCATGCCACCTTCCATAAAACTCACAGGGGTTACAAATCGATTACTAGGCCCTTCCTTTGACCCCTACTGCCTGGCGGAGCTGACGCAGTATGACTGTGACGTCAACGTGCCACTGCAGGGAAATCTTCACCTGCTGCAGGGCAATGATCTGCTCAGAGCTTTAGACCAGTCCACGTAGGCTGTGAAATACTTAAATTACACCCAGTCTGGGTCTCTCCGTTTATTCTGTGCCTACTACATACATGCCTTTCTTACAATGGTTGCCTTTCCAATCACATATATCTACAATTTCAGAATATAGAATACAATCTCCATAACTCAGACACAACTGTTTCAGCTTCAGACATATACATAAGAGCTCtatgaaatgtgcattttattgtttatgtaaGAGTTGTTACTACCTTATAAGCTGTTAGTACCAGTTAATAATGTGTAAACTTTACCTGCTTTTGTTTGGTGTTGCAATTTATGCTCACATTCAGACATATTATACTGAGAGTAATTTCTTTAAGATGGTATAGTTTAATATTGGTATTACTGGTGcaattttctcatttctcttttacatatatatgaaatgtattatATGGTCTCAAGTCAGTTTGGATGTtgcaaagaaaaatgcagttttttaatAGTAACTAAAACATTTTCGTTTAGGGTTTggggtaaaataaaaatgcatggaAATTCAAATCATGAATGTGTTTTGCAATTTGGATAATTTGTAAAATACCCTTTTcttgcttcttttttgtttcagtctctctttcagtctcccCAATCTACCCGAACAACTGTGATGCTATATGTTGCATTTCTCTCCTCTACATCATGTGaagcactttatttaaagaacaTTAAATGGACCCTTTTTTTGCATAGACCAAATACAAGAGAATGTAATATTACTTTTGCATGTGGTGCTTTTAGTTCTTAGCATCTAGTCAACCACATCCAACTTTAACCAGTACCAACCAACTCTTCATAATTTTCTGTCTTATCCTTCCCACCAGTATCACCAGCACGTTATGCTAGCAGCAGTGGTTAAGTTAAAGTTATATATTCTCATATAGATATGTGCAGTGTCTATAGGTGGTGCTGATCAGTGCCTCGGTACCTTATCTTGTGTACTCTAGTAGAAACtgtagcttttctttttttgcattcttaATGCAGTTTAAAGTTATATGTatgattgtttttttgcagCTCAAGCTAATGTATATAACCTCCATTTGATACTATGGAGCTCTTATGTTTCATTAGTGGACATCTAGAACGATTTCTGTCTAAGActgtcagtgtttttcaaaGGAAGGGTGATtataaacatgcacaaaatgttGGCATATAGTAATAATACTTGTTTTTAACTGTTTCACTCAAACTATGTAGCAGTTCGAAATTATTCAAGATTCATCATGAAATATAACTGAACATGTATTTAACACATGGCCTTGTAAGCTATATTAACTCATGCACATTTTAATGATGAACCATAGTACCTGgtcagtatttatttttctaatgatCCTCGTATTTCTGAGAAAGCCTTACTCAAATGTTGCTGATGTTCACATTACACAGTAACATAAATCTATgcgctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacctatTCAGATTACAGTTACTGTCATGTattactttaaaacattttttgacaTAAATGAATGGTAGTTcattaatttgtaatttattaagtGTGTCCATAAACTGCATATTTGCTGTCTCAATACAATTTATGACTTACATAACTAGCTCTGAGTTTAGGATGGACAGGGTAAACCAATTGCTAAGTGAAAATGTTTAACTTACAATGCAATGTTACATAACTGTTCTCTGAAGGGAGATCcactggtttattttttttcttttgttaagtCAGGAAGCCTAagatactgaaaaaaatgtatctaaCTTTATGTGATATTATGAATTGCCTACATATCAAGATGTTactttcatgtttcttttactCCATGTAAAGAAGCACTTTGTTGGGCTCTTTTTGGTAATAAAAGGAGTAGTCAA

Function

NR:

description
PREDICTED: endothelial PAS domain-containing protein 1

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K08268 HIF1A; hypoxia-inducible factor 1 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914794.2 True 4483 mRNA 0.43 15 17796028 17822290

Neighbor

gene id symbol gene type direction distance location
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding upstream 3399 17732760 ~ 17792629 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding upstream 84216 17708916 ~ 17711812 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding upstream 126791 17643020 ~ 17669237 (+)
trnai-uau_6 NA coding upstream 218652 17577283 ~ 17577376 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 308302 17480223 ~ 17487726 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding downstream 10515 17832805 ~ 17850858 (+)
mmrn2b LOC108273952 coding downstream 46572 17868862 ~ 17878282 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding downstream 287349 18109639 ~ 18120051 (+)
itln3 itln2 coding downstream 300867 18123157 ~ 18126303 (+)
gprc5c gprc5c coding downstream 305709 18127999 ~ 18136358 (+)
G198088 NA non-coding upstream 125083 17670180 ~ 17670945 (+)
G198091 NA non-coding upstream 219442 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 221795 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 226866 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 230997 17564599 ~ 17565031 (+)
G198158 NA non-coding downstream 41249 17863539 ~ 17912523 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 93136 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 111740 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 115242 17937532 ~ 17937771 (+)
G198213 NA non-coding downstream 162873 17985163 ~ 17985468 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 223963 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 932533 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3471747 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3761885 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4236943 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 332855 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 619596 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 983787 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1704352 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3635101 21457391 ~ 21500929 (+)

Expression


Co-expression Network