si:dkey-219e21.2 (LOC108273732)


Basic Information

Item Value
gene id si:dkey-219e21.2
gene name LOC108273732
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23426875 ~ 23436725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914798.2
GTGAGACGAGAGAGATcgctcactctttctctcctgcctcctcctcctgacaCAGCTCCTGCCTCATCACGCAGCAAAGgagAACTTGTAACATTGCACAATATGAAGGGGATTCTTAAAGACAAATCACGGCTAGTGAATCATGTGGCCAACTTGGAGGGACAGAGCCACTCGATCGGAGCAGTGCGCTGGAATCTTCCGGAAGAAACGGTGCAGGTTCACAGCTCAGCTCCCAGCAGCCCTTTCAAGAGCAGCAAGAGCACCTCTTCACGCTCGCAGCAGAGACATCATCAGCAGAGTCTGAAAGACCTCCGCAGCCTGCAGGAGTGCATCAACTTTCTCAACAACTGGAAGTTACAGGTGGCACAAGTCTGTAAgAAGGGAAGTGACGGTGGAGAGGAATGTGCTTCATGTTCGTCAGATCGTCAGGAAGACCCTCGAACCGAGCGCAGTCTGGAGGAGAGCCGCAAACTCATCCTGCAGTGGGCTGATGAACTCAAGAGCGTCGACCAGGTATCTAAAGAGAGCCCGTGGCTGCAGGAGAGGTTCAAGCACAGTGAGAAAGAGCAGAAGAAGGAGGAGCATGGAGAAGTGGTGCAGCAGAGGGTCATGGAGTGGGCCAAAGAGCTGCAGAGTGTCTCAGAGAGCTGCGGCATGCTGGGAGATGAGCTGGCGCAGATGCTTCGTCTGCTCGGTCTGAGGAAGAAGAGGCTCGTTTCTTTGATGCCGCTGCTCGAGTTCATCACCTGGTCCTTACTGAAGGATGACAGCAAGGACGTGGTTTCTCAGCTGTGGCTTTCGGCCAAGCAGCGCTCCTGGGCAGCAGgCACACAACAATACATCCCCAACTCCGTGTGGAGTTGGATCACCAGCGCATCAGTTGAAGTTACCCTCGACCCGCTGACGGCCCACCCCTGGCTGCTGCTCTCTGATGATCAGAAGAAGGTTCAGGAGGGTCTGGAAGAAGCCGACCGGCCGTACAGCCCGCAGCGCTTCGACAGCTGGCCGTGCGTCCTGGGCTGGATGGGCTACACGAGAGGCCGCAGCTACTGGGAAGTGGATTTAGCAAACAACGGCTACTGGAGAGTCGGAGTCACCACCGCAGCCTCTAAGAGACACGGCCGCTTCCCCATGAAGCCTTCGAAGGGTTACTGGACACTGTGGAAGAGCACACGACAATTCTACGCCTGCACAGAGCCCGAGACGCCACTGCCTCTCACGCTGGTGCCCAGGAAGATGGGAATATACATCGACTACGAGGAGGGCCAGATCTCTTTCTACAACGTGGAGAACAAATCGCACATCTACACCTTCACGGGGCATTTCCGCGGGAAGCTCTACCCGCTCTTCGCCCCACTGGACGGGAGGACTGTCATGACGGTATCCTGTCCTGTAGACAACAGCGCTGAGTAAATTATTTTCCTTGTACcgaacactgaacactttattggCCTGTGCCTAATTCAGCATAGATTTCAATGTAGtagcattatttaatattttttatgtctGTTTGTCTTAAGATATTGTATATGCATGCACTATACTTTCTGACTTTCTGTCTATGTTCATTTATTAACGTGATTGCTGCTAGactgcactttattttataattattatgccTTCATGTGGTAAATTGAACATTGTTGCACCAGGGTGAGCATATCTacgaaaatatttttaaaaaatcatatttttcatattgagGACATCATTGTAAACAGACGAGAACTGATAGTAACACATGGAGGTTTGTTGTATTAGAAATCTGTTTGCTTTATTATCAATTAATAGCATTTTAATGCATATTGTGAATGTATTTTTgtcaatatatttatttaattgattaatgAAGTCAGAATAAGGCAT
>XM_026914799.2
GTGAGACGAGAGAGATcgctcactctttctctcctgcctcctcctcctgacaCAGCTCCTGCCTCATCACGCAGCAAAGgagAACTTGTAACATTGCACAATATGAAGGGGATTCTTAAAGACAAATCACGGCTGAATCATGTGGCCAACTTGGAGGGACAGAGCCACTCGATCGGAGCAGTGCGCTGGAATCTTCCGGAAGAAACGGTGCAGGTTCACAGCTCAGCTCCCAGCAGCCCTTTCAAGAGCAGCAAGAGCACCTCTTCACGCTCGCAGCAGAGACATCATCAGCAGAGTCTGAAAGACCTCCGCAGCCTGCAGGAGTGCATCAACTTTCTCAACAACTGGAAGTTACAGGTGGCACAAGTCTGTAAgAAGGGAAGTGACGGTGGAGAGGAATGTGCTTCATGTTCGTCAGATCGTCAGGAAGACCCTCGAACCGAGCGCAGTCTGGAGGAGAGCCGCAAACTCATCCTGCAGTGGGCTGATGAACTCAAGAGCGTCGACCAGGTATCTAAAGAGAGCCCGTGGCTGCAGGAGAGGTTCAAGCACAGTGAGAAAGAGCAGAAGAAGGAGGAGCATGGAGAAGTGGTGCAGCAGAGGGTCATGGAGTGGGCCAAAGAGCTGCAGAGTGTCTCAGAGAGCTGCGGCATGCTGGGAGATGAGCTGGCGCAGATGCTTCGTCTGCTCGGTCTGAGGAAGAAGAGGCTCGTTTCTTTGATGCCGCTGCTCGAGTTCATCACCTGGTCCTTACTGAAGGATGACAGCAAGGACGTGGTTTCTCAGCTGTGGCTTTCGGCCAAGCAGCGCTCCTGGGCAGCAGgCACACAACAATACATCCCCAACTCCGTGTGGAGTTGGATCACCAGCGCATCAGTTGAAGTTACCCTCGACCCGCTGACGGCCCACCCCTGGCTGCTGCTCTCTGATGATCAGAAGAAGGTTCAGGAGGGTCTGGAAGAAGCCGACCGGCCGTACAGCCCGCAGCGCTTCGACAGCTGGCCGTGCGTCCTGGGCTGGATGGGCTACACGAGAGGCCGCAGCTACTGGGAAGTGGATTTAGCAAACAACGGCTACTGGAGAGTCGGAGTCACCACCGCAGCCTCTAAGAGACACGGCCGCTTCCCCATGAAGCCTTCGAAGGGTTACTGGACACTGTGGAAGAGCACACGACAATTCTACGCCTGCACAGAGCCCGAGACGCCACTGCCTCTCACGCTGGTGCCCAGGAAGATGGGAATATACATCGACTACGAGGAGGGCCAGATCTCTTTCTACAACGTGGAGAACAAATCGCACATCTACACCTTCACGGGGCATTTCCGCGGGAAGCTCTACCCGCTCTTCGCCCCACTGGACGGGAGGACTGTCATGACGGTATCCTGTCCTGTAGACAACAGCGCTGAGTAAATTATTTTCCTTGTACcgaacactgaacactttattggCCTGTGCCTAATTCAGCATAGATTTCAATGTAGtagcattatttaatattttttatgtctGTTTGTCTTAAGATATTGTATATGCATGCACTATACTTTCTGACTTTCTGTCTATGTTCATTTATTAACGTGATTGCTGCTAGactgcactttattttataattattatgccTTCATGTGGTAAATTGAACATTGTTGCACCAGGGTGAGCATATCTacgaaaatatttttaaaaaatcatatttttcatattgagGACATCATTGTAAACAGACGAGAACTGATAGTAACACATGGAGGTTTGTTGTATTAGAAATCTGTTTGCTTTATTATCAATTAATAGCATTTTAATGCATATTGTGAATGTATTTTTgtcaatatatttatttaattgattaatgAAGTCAGAATAAGGCATG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914798.2 True 1869 mRNA 0.49 11 23426875 23436724
XM_026914799.2 False 1867 mRNA 0.49 11 23426875 23436725

Neighbor

gene id symbol gene type direction distance location
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding upstream 6811 23402183 ~ 23420064 (+)
LOC113527736 NA coding upstream 105647 23315593 ~ 23321228 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding upstream 161475 23239297 ~ 23265400 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding upstream 259388 23132483 ~ 23167487 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding upstream 573379 22849303 ~ 22853496 (+)
mfsd8 mfsd8 coding downstream 10418 23447143 ~ 23459505 (+)
si:dkey-219e21.4 LOC108273735 coding downstream 29632 23466357 ~ 23472229 (+)
ablim2 ablim2 coding downstream 104299 23541024 ~ 23600132 (+)
uros uros coding downstream 610838 24047563 ~ 24064984 (+)
mmp21 mmp21 coding downstream 630814 24067539 ~ 24080612 (+)
G201234 NA non-coding upstream 45885 23375074 ~ 23380990 (+)
G201186 NA non-coding upstream 157456 23268627 ~ 23269419 (+)
G201077 NA non-coding upstream 320967 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 323376 23103284 ~ 23103499 (+)
G201019 NA non-coding upstream 558037 22866908 ~ 22868838 (+)
G201240 NA non-coding downstream 23277 23460002 ~ 23460455 (+)
G201281 NA non-coding downstream 263994 23700719 ~ 23729010 (+)
G201284 NA non-coding downstream 282322 23719047 ~ 23722939 (+)
G201297 NA non-coding downstream 301632 23738357 ~ 23740340 (+)
G201600 NA non-coding downstream 326340 23763065 ~ 23763266 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 28212 23272574 ~ 23398663 (+)
G201214 NA other upstream 97304 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 108721 23311260 ~ 23318154 (+)
G201154 NA other upstream 220496 23205666 ~ 23206379 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 555591 22798142 ~ 22871284 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 168112 23604837 ~ 23688417 (+)
G201962 NA other downstream 945062 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 1018934 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 1224319 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1892484 25329209 ~ 25428112 (+)

Expression


Co-expression Network