LOC113527221


Basic Information

Item Value
gene id LOC113527221
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22029089 ~ 22035625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914805.2
CCTCATGTAGGACAAGGCAATCCTGAACTATGCAGAGCCAAGTGGTTGCTGCTTCGGCATTCCTGTTTTGCTGtggtttgttttatgttttaatttggAACAAGATGCCGGAAAAATGGCCTAGTTTCCAAGCAGGCAGTATTCCTACAAGGGAATCAGATTCATTTTGGAGAAGTGGAGATGAAATCACAGGAAAGTTTATAACCACTACTGGGGCGCCTTCGCTGAATTTGTCCTCAGGAAAAACCACAAAAGGAGCGTCAGAGCATCATGTGCCTTTAAACACATCAGAGCTTAAACATCAGATCAACATAACCCCTATTCCCATCCTCTATATTAAAAATTTCACTAAGCTGCCCAAGTGGGACTTTGAGGATGTTTACATGCAGAGCAGTGAAGCACGACGGCCGGTCTGTTCAAAGTCTCTCCAGAACTCCAAAGATAAAGAGTTTCAGGAGGCCgcgttgtggaacatccagcTTTGGCTCCACAATGGCCACCTCAATGTGAGTGAGTGGAACCGGCTTGCGCACTTCAACAACCCGTTTGGGTTTATGGAATATACCTATACTGACATCAAAAAGTCAGTCGATTTGATCCCGAAGCCGAAGTACAATCAGCTTTTGCCAGTGCCCAGTGGGTCAGAGGATGGATGTATTCGCTGCGCTGTAGTTGGCACCGGTGGCATTCTCAACGGCTCCAAAATGGGCAAAGAGATCGACTCTCATGATTACGTCTTTCGAGTGAATGGAGCAGTCACTAAAGGCTTCGAGGAAGATGTCGGAAATAAAACCTCGGTGTACGTGCACACGGCGTTCTCCTTAAGCCAGTCTGTTATACACCTGGGAAAGTATGGCTTCAAGTACAGTCCACAGGATGAAGGAATTAAACATGTGATGATTCCAGAGGGTCTTAGAGATTATGAGTGGATTGAGGGCCTCCTGGAGAAAAAGAGGATGACATACGGATCCTATAAAGGTTACAGGCCTCTTACCTTCTACAACGACCGGTTCCAAGAGGATAAATTTTATGTCCTTCATCCGGACTTTCTACGATACATCCGGAACAGATTCATGCCATCCGAAAATCTGAAGGAATCGTACTGGGCTTTATACAGACCGACCAATGGAGCATTCACATTGTTCTTAGCTCTTCACACCTGTGATATCGTGCATGCGTATGGATTCATCACGGCAGACCACAGGAAATACCCCAACTATTACTTTGAAACCACAAAAACTAGGGTTGTTTTTTACCTCAATCATGACTATAACCTGGAGATAAAAACCTGGAAGAAACTGCATGATGCTGGAATCATCACCCTTTACCAAAGACAGGAAAACTAAACCAGACTGTGAATTAATGAACTCTTTTCAttcatacagtactgtgcaaaaacttaggcacatgcaaaaatatgctgtagagcaaagatgccttcaaaagtaatgaaatgaaaagtttctacatttaaaataatacta

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03479 SIAT7A, ST6GalNAc I; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914805.2 True 1484 mRNA 0.44 9 22029089 22035625

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding upstream 62342 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 69871 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 238862 21783029 ~ 21790227 (+)
kcnj16 LOC108274207 coding upstream 251258 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 389505 21612958 ~ 21639584 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 2347 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 88711 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 165876 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 204880 22240505 ~ 22242775 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 472793 22508418 ~ 22701836 (+)
G200569 NA non-coding upstream 29197 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 40335 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 41220 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 42088 21986362 ~ 21987001 (+)
G200556 NA non-coding upstream 49708 21979083 ~ 21979381 (+)
G200779 NA non-coding downstream 78781 22114406 ~ 22114822 (+)
G200784 NA non-coding downstream 88608 22124233 ~ 22242312 (+)
G200807 NA non-coding downstream 312265 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 831283 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 1067659 23103284 ~ 23103499 (+)
LOC113527202 NA other upstream 2608 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 16785 22008511 ~ 22012304 (+)
G200571 NA other upstream 25815 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 528160 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2462405 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 762517 22798142 ~ 22871284 (+)
G201154 NA other downstream 1170041 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1236949 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1275635 23311260 ~ 23318154 (+)
G201214 NA other downstream 1288448 23324073 ~ 23329571 (+)

Expression


Co-expression Network