LOC113527265 (LOC108274106,LOC108441156)


Basic Information

Item Value
gene id LOC113527265
gene name LOC108274106,LOC108441156
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5817692 ~ 5849431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914889.2
AAgtagtgtggtttgggacacagccgtCCTGTGataaagccttttttttctgtcttctttctttCGGTCTCCTTTAACCACACCCGGAACTCCGGCGAAGTTTTAACCCGATGAGTGGTCAGGTAAAGGACAGAGGTACATGTACAAAAGTCCACTTCCGAGTAGGAAGTGAAGGCGACATGAGAAAAGGTTCAGCTCTGGGGAGCCCGAATCGTTTGGATATGAGCGGTAAGGAGGCGGAAGGAGGAGACGCAGTGTCCAAATCCGAGAAAGACCAGAGCTGGATTGCGGCTGTAATCAAGAAAAGAGTGTGTACGACGTTTGTGGAGGATTCGTTCAGCAATGGCGCCCTGTGTCAGTGTGGGAGTGCGAGGGAAAGCCACGCCTCAGTCACTctaaatgattattttagtaCGGCCATTGTCAGTCGCTGGGATCGTTCTCAGCACACATCAGAGTCTCCCACTGATGCTTTTGGAGAGGTGCAGTTTGCAGGAGCCAGCAAGAGGCACAGCTATTTTCTGCGTCTTTCCTGGGATACTCCCCCTGCTACTGTTTATTCCATTTTGACCAGCCATTGGGGCCTGCCATCTCCAAACCTGGTGGTGTCAGTGGCCGGCGGTGTGGGGAAGTCTAAGGTCAAGACCTGGGTGCGAGAGGTTCTAAGGCAAGGATTGGTCAGAGCAGCCCAGAGCACAggagcatgGATCTTATCAGGAGGACTGCGGGAGGGTGTTGGCAGGTATCTAGGGGAGGCTGTGAGGGATCATGCTATGGCTGCATCTTCAATTTCCCTCTCTAAAGTAGTGGCCATAGGCATAGCTCCATGGGGTTTGGTATCCAACCGAGAACAACTAATCAACCCAGAGGGCAGTTTTCCTGCCGAGTACTACGTTCCAAACACGTCCCGAGATTCCTGCTTTCTGGATAACAACTACCAGGCATTTCTCCTTGTGGATGATGGGAGTGTAGGCCATAAAGGTGTGGAGGCTGATTTCAGAGCCCGCCTAGAGGACCACATTTCCCACCAGCGCACGGGAAAATGGGgAAGCGGAAGCATGGACATCCCTGTGCTGTGTATGCTGGTGTCAGGAGAGCCTTACATGCTTGAGAGAATGGATCTCTCCTTGAAGAAGTCTATCCCCTGGTTGGTCCTGGCAGGCTCGGGGGGACTGGCTGACTTGGTAAGCGACATCCTGGACAATGTATCGGCTGCACCAAGCCTGCCTGGGGCGGGGTCAGAAGGTGACGGGGAGGCGGCTACTAAAACAGATCTCAGGGGGAGAGTAGCGGAGAGAGTGCTGAAACACTTTCCCTCTGAAGAGGACACTGACAAACTCATAGACAAGGTTTTGAGTATTTACCAGAGCAAAGACCTGATCTCCATTTATCATGAAGAGCATGAGGGCTTAGACGACTTTGATACTGTGCTGCTGAAGGCTCTAGTCAGGGCGGGTAAACAGCGCCTTTCCACTGATTCCGTCCCCAATACCGAGGAGCTGAGGTTGGCTGTGACCTGGAACAGAGTGGACATCGCCAAGAGTGAGCTCTTCGCTGGAAATATCCAGTGGAAGAATGAGGACTTGGAGGGCTTCATGACTGATGCTTTGGTGAACGACAAGCCCCAATTTGTACGTCTCTTTACCGAAAACGGGCTGAACATTCTGGACTATCTTACATACGCCCGTCTTGAGGAGCTGTATCGCTCAATCTCAGAAGGCTGTCTGGCCTACACGCTGCTACAGCGTTGCCTCGCAGAACGTCTGGGTGCTGTCAATACTGGCACTTTTCTCTCCGTTGCCGATTTTGTTAACCAGACCTCCAGCCCAGTCAAAGAACTGACACTTTATGAGGTGTCTCAGGTCCTACAGTACTTGCTAGGCGATGTGTGTCAGCCGTTCTATTATAAATGCCTGGGTCTGGAGGGTATTGTTTCCAAACGGAAAATCATCAAGAAACTGGCTACAATCTTGAAAGAAGATGCTGACTATCGGAAACATAGGTGTACACACCCATGGGCTTCACTCTTCATCTGGGCCGTGCTGCAGAACCGCAGTGAGATGGCTGTCTACTTCTGGGAAATGACCTCAGAGTCAGTGTTGAGTGCTCTGAGTGCTTGTAAGCTGCTGAGAGTTCTGTCCAGATTAGAGACTGAGAATGAGATGAAACTCTCCATGAAGGAACTGGCTCAGAGATTTGAGAACTTGGCCCATGATATATTCAGTAAGTGCTATGAGAGCAGTGAGAATCGCTCTTTCATTCTGCTGAAGAAAAAATCGGAGGTCTGGAAGGGCTCTACATGTCTGAAGATGGCCATGGAGGCGGATGCTCGCCTCTTCTTTAGTCATGACGGCGTGCAGagtctGCTGTCTCAGATCTGGTGGGGGGCTATGGACAGGAGCACCGAGGTATGGAAGCTCatcctcactctgtttatcccTCCTCTCTGCTACACCAACCTAATCTCTTTCACAGAGGTGGATGATGCAGATGAGGGGAAGCCTGATGAAGTCTCAGAGCGAAAGGACATAGACTGGCTCTATGCAGAAACCGTCTTCTCTTTCTCAGACATCAAACGCATTCAGGCAAAAGCAGAAGAGCCAACTCCTATTAGACAAAGCATAAAAGgtcaccCAGTGAGGCCAGTCCGTCCCAAGTTGCCTTTTGTATTTTCACGCTGGAGACAGTTCTGGTACGCACCGGTCACTGCCTTCCTTGGCAACGTGCTGATGTACTTCCTCTTCCTGCTTCTGTTTGCGTATGTGCTGTTGATGGACTTCAAGCCTCCACCCCCGAGGGGCCCGGCCTTCTGGGAGCTCCTGCTGTATTTCTGGGTGTTCACCATAGTGTGCGAGGAGATTCGAGAGACATTCTTTGTGGGCAGCATGACTTTTAAGCAGAGGATACGACAGTATGCTCAGGACATGTGGCACAAGTGTGACCTCATTGCCATCACCCTCTTCCTTATTGGCGTGTGCTGCAGGATGTTCAAGGAAACGTTTTGGTTAGGCCGTGCTGCCTTGTGTCTCGACTACATGGTGTTCACCCTCAGACTTATCCACATCTTCGCCATTCATAAGCAACTTGGGCCAAAAATCATCATAGTGGGCAAAATGATGAaagatgtctttttctttctgttcttccttGCTGTGTGGTTGTTGGCATATGGAGTGGCCAATCAGGCTCTGATCTACCCCTACGACACAAGTGTTGATAGGATACTTCGCCGTGTATTCTACAGgccatatttacacatatttggCCAAATTCCTGTGGAGAAAATAGACTctggaTTTAGTTGGGATATAAATTGCACAGACAATGCAACACTAGTTAACGCAGGTGCAGAACCATGTAGGGAAGCACATCATAACTGGCTTGTGGTCATCTTACTCATCATCTACCTTCTGGTCACCAACATCCTGCTCATTAACCTACTCATCGCCATGTTCAGTTACACCTTCACCAAGGTGCAAGATCGGAGTGACATATACTGGAAGTTCCAGCGCTATAACGTAATTGTTGGGTATCATTCTCGGCCATGCCTCGCTCCacccttcatcatcatctcccACTTCCACCTCTTCATCAAGCGGAACATCCGCAAGGTGCCTTCTGAGAAGGTGCACCAATTTGTTGTGGACTTAAAGGATAAAGCTAACAACCGGCTAATGACTTGGGAGAGCGTTCAGAAGGAGAACTTCTTGTCTGCTGAGGGAAAGAAGTTAAGAGGAAGTGACACGGAGAGGCTAAAGCGCATGTCTGTCAAagtGGATGGTGTTCTCAAACAGACAGCTGAGATCAGGGATGTGGATCGCAGATTAAGAGCACTTGAGTCTGAGATGGAATTCTGTTCATCTACACTTCTCTGGATGGCTGAAGCTCTCTCTCAGAGTGGTGTGCTAAAATCCAACAAGCCTCCTCCTACACATAAAGtaaagccATCCACACCGGAGATGTGAGAACGGTTCCCTCACCTTTCATCCCTCTTTTGccctctttctcttcatctcccacacacagacacacagtagtgtaaaaGGCAACGTATTTCTGTCATTCAGTCTATTTTATGAGAGTGTGGTAAAGTTGCTTCTGATAATTAGATTGGCCATCTTTGTCCTCTTCCTTGCATCTGTATTTATTAGTCCAAAGAAAAAGGTAAGATTGCAGAATAAGAGAATGGGGTCAAACTTAGGCAAAAGGACAGCAGAATAAAAGTTtctgatttcacacacacacacacacacacatatatgtatatgtatatacatactcTTCATTCAGACCACCCTTAATAAACAAGGGAGTCAGTTCTTACATTTTGTGGGAtcttatattttttgtgaacaattttaatttattttataaagactCAAAGCAAGAATAATCATTTAGTAGTAATCAGTAATGATTTAGTGCAAtgataaatgcaaaaataaatccCAAACACACATCTTAAAGGTGCTAGAGCTACAGAGAACCAGACAAAAACTTAAAGAACAAGTAGTTTGATAATTCCATGTGGTTTGCCAGTATTAGACTACAAGTCAAGCTGAAAATAACAACGAACTTCAGTGTTATCTCATTCTACGTCAGTTAACTTTAAACAAATACGGCTAATGACATGCAAATGTTCCAGCAATTAAAAGCATTGGGAGACATGCGTATACAGGGACTAATAAAGAACTCGGTTTTCATTGGACTGCAATACATGAGCCTGAGCCATTTCTGCGTCAAATTGTTGAGTAAAAAACTGTACTACAACAGTTAGCAGAAATGTGCATTAATGAGTATTTCAGGGTCTGtgatatatataatttgtataataactcatcatttaataaaaattaaacatacagtGGTGCTAAATTTTTCTTATTACAGTCTCACTAAATTTTTTCCTCTCAATTATCATTGCTGaaatacacagatcagccagaacattatgaccactgacaggtgaagtgaataatattgattatcttgttacaatagcacctgtcaagggttgagatatattgggcaggaaaacaggaaaaatgggcaagcgtaa

Function

GO: NA

KEGG:

id description
K04979 TRPM4; transient receptor potential cation channel subfamily M member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914889.2 True 5059 mRNA 0.46 28 5817692 5849431

Neighbor

gene id symbol gene type direction distance location
LOC113527266 LOC108441168 coding downstream 3220 5807820 ~ 5814472 (-)
zgc:92313 LOC108273548 coding downstream 108403 5692120 ~ 5709289 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding downstream 139731 5674724 ~ 5677961 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding downstream 198702 5614430 ~ 5618990 (-)
si:ch211-180a12.2 LOC108273640 coding downstream 244803 5555957 ~ 5572889 (-)
irf3 LOC108273898 coding upstream 17510 5866941 ~ 5882707 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding upstream 36074 5885505 ~ 5903485 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding upstream 61003 5910434 ~ 5932525 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding upstream 120305 5969736 ~ 6000168 (-)
zgc:163073 NA coding upstream 157262 6006693 ~ 6011524 (-)
G191490 NA non-coding downstream 77493 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 128124 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 147939 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 149846 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 333025 5482620 ~ 5484667 (-)
LOC113527731 NA non-coding upstream 86108 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 369275 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 370381 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 401991 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 410434 6259865 ~ 6261598 (-)
LOC113527291 LOC108274042 other downstream 26422 5768528 ~ 5791270 (-)
G191430 NA other downstream 203738 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 326767 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 754274 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 864833 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 697510 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1550569 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1731919 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1751787 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2998231 8847662 ~ 8857748 (-)

Expression


Co-expression Network