LOC113527266 (LOC108441168)


Basic Information

Item Value
gene id LOC113527266
gene name LOC108441168
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5807820 ~ 5814472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914891.2
ggtatgtgtgtgtgcgtgtgtctgtgtgcgcatGCCCTTTTCTCTTGTGCTAGCATGCACACCATTGCTATGCTTGCTATCTTTCTCACTCACATAGACAGGTTGAATAGAGGACATCAGAATAGCAGCCTTACAGACATGTGGTCTTGTCAGTCATCTCCCCGTGCTTCCTTGCTCCATTTTGTTCTctgattgtgtgtgtcagtgtatttgcatgtgtgtacTCGTGTGCATGTGACTGAACTGCAGTGGTTCAGTCTGTAGTGGTTCAACTGTCTGCAAAGGAACCAAACAAAAAGCAGACTTACTGCCGCAACTCAGCTTGCAAGCATTGTTTACTTTCTTTTATCTAGTGCAAAGAGCTAAAGTTTAAAGTGCTTTAGGGTGGGGACACTGCTCTAGACTGGAAGATCCGGTTCCTTCTTGTGTGAGGGTTGAAAATGGCAGTTTTGCGTCGTGGCCTAGTGTGGCTGCTGCTGGCTCTGCTGAGTGTCGGAGTATGGACTCAGGACGCAGTGGAGGTAGAAGAAGAGAGCCAGGACGAAGCAGAGGAGCTGGGGGAATTGAACACAGAAGAAAGTGATGAGGAAGGTGGAGAAGCAGCTGATGAGGGAGCACAGGATCTAGGAGGAGGGAGTGATGAAGAGGAAAATGGAGAAACAGAGGCAGAtaatgatgaagaagaagaaggggatCAGTCAAAGGAGGAAGAATCTGCAGAGGACACTTCTGCTGAGGAAGAAGACACCACAGAAGAGggtgagacagatagaggggATAAtgtagaggaggaggaggctgaGGATGAAGCCACTACGGACGACGAGGTTGAAGGAGAAGAAGATGCAGAGGAGGATGAGGCTGAAGATGTAGAGGAAGATGGAGCTGAGGAGGAAGAAGCTGtagatgaagaggaggaggaggaagaggaggaggaggaagaaacagaagaagaggaggaagaggaggaagttACTGTGTCTCATGACAAAGATGacagtgaggaggaggatgatgaagaagaggaaaaggatAGCAGTGTACATTCTGCAgcagaagaggatgaggaggacCAGGGCAAAGCCGATGATGATGAGCGTGGACAAAAAGACGCAGATGATaaaactgaggaaaaagttGAAGAACACATTGGTGATgatgaaaaaggaaaagcagCTGAGGCAGAGACCACAACTGCATCACAGTATCACAGTGGATCTCTGTGTAGCCTGTGCTCCACCTGTGAGCACTGCAATAGCTGTGATAAATGCCCGTGCGAGGCAGGAGACTCATCAGTGCATTGCCAGCACTGTGACCAATGCTCCTACTGCTACATATGTCCTGTGATTTGTGAGACGATCTGCGAGCCAGgcgGCTTTATCGACGTGATGTCTGGAACAGTGTATCAAACTATTGCCTCATATCTCTGAAGATATTTCACGTTGTCTCCTATGCCATCCTGTGGTGGACAGCAGAAGTAAAGCTCAGCGGCTGAGTGATGCATGACCTTTTATCTGTCCATCTTAAGAAGTTTATAGAGATCATCAAGGAGATATTTAAAGCAGATCTTTTAAATGCTATctttaagtttttttgtttacagaaatacagactatttattttcagtttcattagATTCTCTTCTCGTGATAAAATACTTGTATTTAGTTCCACcagaaataaatcatttcaatAAAGAACAGATACGATACATGA

Function

GO: NA

KEGG:

id description
K23450 HRC; sarcoplasmic reticulum histidine-rich calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914891.2 True 1716 mRNA 0.46 6 5807820 5814472

Neighbor

gene id symbol gene type direction distance location
zgc:92313 LOC108273548 coding downstream 98531 5692120 ~ 5709289 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding downstream 129859 5674724 ~ 5677961 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding downstream 188830 5614430 ~ 5618990 (-)
si:ch211-180a12.2 LOC108273640 coding downstream 234931 5555957 ~ 5572889 (-)
LOC117598535 NA coding downstream 252913 5545841 ~ 5554907 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 3220 5817692 ~ 5849431 (-)
irf3 LOC108273898 coding upstream 52469 5866941 ~ 5882707 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding upstream 71033 5885505 ~ 5903485 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding upstream 95962 5910434 ~ 5932525 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding upstream 155264 5969736 ~ 6000168 (-)
G191490 NA non-coding downstream 67621 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 118252 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 138067 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 139974 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 323153 5482620 ~ 5484667 (-)
LOC113527731 NA non-coding upstream 121067 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 404234 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 405340 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 436950 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 445393 6259865 ~ 6261598 (-)
LOC113527291 LOC108274042 other downstream 16550 5768528 ~ 5791270 (-)
G191430 NA other downstream 193866 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 316895 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 744402 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 854961 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 732469 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1585528 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1766878 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1786746 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 3033190 8847662 ~ 8857748 (-)

Expression


Co-expression Network