ccdc186 (ccdc186,LOC107755417,LOC107689962)


Basic Information

Item Value
gene id ccdc186
gene name ccdc186,LOC107755417,LOC107689962
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13091186 ~ 13113005 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914892.2
gtcaCTGGTGTCTCACTGCCTGCAGTCGGTTCAGTGCAGTGGCCATATTTGTTGATGTGTCACCTCACCAGGAGCTAACATAAGGACTTTGGACAAGCTGTGTTGGGACTACCTTTATAACAGTCGTACTGAATGGACCTAACATAACGGGTGTGGACTTTTAGGAGAGCATGGAGCAGTGTGACTCTCAGGGAGAACAGCACCCCAGTCCCGATCCTCCTCACAGCACAGACGTCAGCTCAGCATGCACGGGGTCATCGCAAGTCATCAGAGATGGTACTGGACAGGAGCTAAAAGTTATGGAGGAGGATGTTGAAGCTGAACAGGACAGTGTCTTGGACAGCATTCAGTCTGATGGTGCTGAGAGGGTGGAGCTGAGACTGGACTTTTCCACACCAGACCAGGAAGGAGCGACTGTAGAGGATGGACAGGGAGATGgcaacagcagctgtgacagtggAACCGCCTCCATAGATGATACCAGGACTCCTCCCGCTCTTCCTAATGGACTTGTAGAGACAGCACCTGCTGTTCTGGATGGGGCGGTAGAGGTTTTGCTTCCTTCCAGTCATCCTGAGGACCAAAAAGTGGACTCTTCTTGTGTTCCAGATGATGCAAGTGAATCTTGTGAGTCAAACAATACACCTTCACATGAAGTAAGTCCATCAGGGGATGCTGCCAAACCTCAAGGTCTAAGCAGTCAAACTGGCAAAGTGACAAACTCTGTTTCAGCAGTTTCGCCACAGCATGAGGCTAATCACTCCAACTCCGTGTCCAGTGCTAACCTGTATGATACAGACTGCAGCAGGAAGCTAATGTCTGAGATCCAGCGCTCGGTGTCTCAGGAATCTCTGCTGGATGAGTTGGAGACAGAGCTGCTGAGCTGTCAGGTACGGGAGCAAGGCATCAGCAGAGCGAGCCCTCCGAACGGTCTGCCCAAGGATCAGGGCTCCATGGTTGTGTTCGAGAAGTGTGTCCAGTACAAGTACTCGCAACAGGAAAAGGCCATCAAAAGGTTGCTGGATGAGAATAAGAAACACCAGGAGTTGATTCTGGGCATCTGCTCTGAGAAAGACAACATGAGGGAGGAGCTTAAGAGGAGGATGGAGACTGAGAAACAGCATCTTTGCACGATTAAGAAGTTTGAGAGCAGGGTGGAGGAACTATTGAAGGAGCTGAAAGAATCCAAGGACAAACTGGTTCACCAGGACCAGGCAGCTAAAAACACCATTCAGCAGATGCAGAGGGAGATGTCCTACCGCCTTGAGCAGGCTGGTAAGAAGTGTGAGGAGGCACGCCAGGAGAAGGAGGCCATGGTTATGAAGTATGTGCGAGGGGAAAAAGAGGCACTGGACCTCCGTAGGGAAAAGGAGCAATTAGAGAGAAAGCTCAGAGAGGCTACAACAGAGGTGGACAAACAGGCCAGGAGGGGGAACCAGCTGGCACAGGAGAAAGGACGGCTTCAGCAGCTACATGATGCCAAAGAGAATGAGATGAGCAGGCTGTCTCGGGAACTGGAAAAGCTCAAAGATGAGATCAACTCTCATATCATCAAAGTGAAATGGGCCCAGAACAAATTAAAGAGTGAGACGGATGCTCATAAGGAAACAAAAGACAAGTTAAAAGAAACGACTGCCAAGCTGACCCAAGCGAAAGAGGAGACTGAACAGATCCGCAAGAATTGCCAAGACATGATTCGTACATATCAGGAGTCAGAGGAAATTAAGTCTAATGAATTGGATGCAAAGCTGCGGGAAACAAAGGGTGAGCTGGAGAAGCACAAGCAGGAACAGACAGACCAGCTGGAGatgcATCGAGCCAAGATTAAGGAGCTGGAGGATCTAAAGAGGAGCTTCAAAGAAGGCATGGATGAGCTTACCACGCTTAGAACCAAGGTAAAATGTCTGGAGGATGAAAGGCCTCGATGGGAAGATGAGCTGTGTAAATACAGAGAGATCATTAACAGACAGAAGTCTGAGATCCAGAACCAGCGTGAGAAGCTGGGGGACATTCAGAGATTAGAGGAGCAGCATCAGAGAGATGAGCAGGAGATGGAGTCTCTGAGAGAGGAGGTGGAGAGTCTGAACTTACAGATTGCAGACCTACACAAAGATGTACAGGGTGGCCGAGTGCGGGAGGCTGAGCTCCTGGCTTTCACAGAGAAAATGACGAGTAAGAATGCTCAGCTACAGTCTGAGAGCAATGGCCTGCAGTCTCAGCTCGACCGCATGACCAATAACTCCAGGGAGCTACAGAACAGACTGGAGGAGACCGAGAGGGCCCTGACAGACACGacgGCGAGGATGAAGAGAGAGGAACAGCGACTGCATGAAGAAGTCCAGGCTCTACAGAATGAGCGATCTGCATTGCAAGCAGAGACTGCACAGCTAAAGACAAGAGTAGAGGAGCTGAGAGACGAGCTGGTTACACAGAAAAGGAAGCAAGCAGCCAACATCAAGGATCTGACAAAGCAGCTCACACAAGCACGCAAGAAGCTGGATCAGATGGAGAATGGAGGCTGTGATAGGGAGGGCAGCAGCATGGGCAGTCGCTCCAGTTCCTCAGgcTCTCTTAATGCTCGAGGCAGCAGTATGGACGATCGTTCGCCTGAGAACCAGTCAGGTTCTtctgtggtggtggtggacaGCTTTCCAGAGGTGGACAAAGCCGTGTTGGTGGAGCGTATCGTACGGCTGCAGAAAGCCCATGCACGCAAGAATGAGAAAATCGAATTCTTGGAGGACCACATCAAGCAGCTTGTGGAGGAGATCAGGAAAAAGACAAAAATTATCCAGAGCTATGTGCTAAGGGAGGAGTCTGGAGCGCTGTCATCCGAGGCGTCAGATTTTAATAAAGCCCACCTGAGTAAGAGAGGGGGCATCATGGCCTCTCTGTACACATCACACCCCGCTGACAGTGGACTCACCCTTGACCTCTCTCTGGAGATCAACAGGAAGCTCCAGGCAGTGCTGGAGGACACGCTGCTCAAGAACATCACACTGAAGGAGAATCTCCAGACCTTGGGTTCAGAGATTGAGAGACTGATTCAGCAACAGCGACCAGTTGAACCCGGTGTCAGAAGAAAATGACAGTAGTGCTCTTGGTGGAGTCACTACTACAGGGCATCAAAAATGTGGAAGTTTACAAGCGTTCAGGTGCTCTGAAGGACCAGGGTTTGTGGTTAACCCAGGAGGCTGACAAGGAAAAAACGCACATACAGGCACATTCAGTGTGACAAGCTGGGAAAGGAGGAAGGCATACCACAAAGTGAGCAACCTCTTGGAGGACTCGAGTCTTCTCCATCTGCTTGGTGTCAGATTGTCCTACCATCATCACTCACCTGTCCGATGTGAGCGGCTCCATCGAATGTAACTACTGTAGATAAAAGAATTGCACACTTCAGCCCAGTgatttgtaaatgtataaagcctggataatgaatgaattaatgattgAGCACACATGTATGCAAAGAAGGTACTTCCAAGAGCTTGACCCTAATGATTGAGAAAAAGAGGCTTCAGCGAGTAATGGTGCATTTTCGAAACAGAGGACATATTCAGACCTGCTCCACATCATTATCTTGTTGCATAAGGGCCACTACTTCTTTTTCTGGCCCCTTATGCTTTTGTGCCAATTACTGAATGTGTGTAAAGTGCAGACACTAATGCATACTCCCACATGGTGGCTTAAGAAAGGGGACATTTTTTGCCACAAGGTTTTCTTTCAGCCGGATGCCATTTTCTCTCTGCAGActgaagcacttaaaaaaaaggccAGATATTACACTGCatgcacttttttcccccaatattAGGTGTCTTGGTACAGTATAAAGCAGATTAATCTTAACTACAGTGGGGATAATTGGATATAATTAGCATTGGTCTTTGATAAGTGAGCTTTTTTATCCTGGTCTAAATTAAGTTCTTATAAAATCAATGTTATGTTTTTGTCCTACCTACTGAGAGGAATTCAATGTCTGCCATTTGTTATATGGAAAAACTGTCAgcatttatattttcacttttctcctccctctcgctgtttgtgttgtattgtgtaaAGCTATTGGGAGGCTTAATTAAAGAGGCAATTTTAAGGGATCAGTGGAAAAGGCAGATTAACATTAGTATTTTGAGGAAATAAGTGcaattctgttttttccttcGCTATGTGGCAGAGAGGGGTGGGGGGCTTGTTTTCCCTAAAACAGGCCTGAGTTGTGATCCCCACAGCAACTGTCCCATTTAAGGCCctaaaaagaatgaatttgtgACGGCAAATTCCTTTGGTGGATTGAAGCCAGACTGTATGCTTTCTACAAGCTGTATTCGGACTGCCTGGGGAGTTGCTGGCCTAGAGATCTCTGCTCTGCATATTTAAGAGTTAGAAAGAAATGTCATTAGCTGCTGCTCGTGGACTCCTTTTGTCTTTATTCTTAAGCTTATAGAAGGTAAATAGTGAAGGATTATTTGGGATGTGGCAATATGTACAGGGACCATGCCTTCACCTGCCAGCCTTTTCCAATTATTAAGCCCAGACATATGAGTTGTAAACCTTTGGCCCTAAGCTGCAAAGAGCGATTAAGAACCATGTACCACAATACAATTTGAGGCCAATGGTGGGATCTTCACCTTTCCTCTTCACACTCCATCATCCTAGACACACCAGAGACAttccctgcaaaaaaaaaaaaaaaaaaaaaaagaaagaggaacaTTTGCTTTGGAGCCTGAACTCCAAGATAAACACTGTCAATAATTGCTCAAGGCTCTGtttcataatttattaaatctcCTTGTTAAATTCTCTTAAGTATGAAATGACAAGAATTATCTTttgaaatatgtgtgtatgtgagtggtGATCAAAACTGATGAAGTGCAAAAATGCTGTTGAATCTCTTGCTGATCTGTCGTCTGTGCTCTGTTCAATTAACGTAGTCAGACTGTGATTATACAAACTTGTAGATATGAAGTGATGTAAATggtaaattgtttttaaagataTGAATCTGGATTCCTTCATGTAAATATGGTGCTTacaaggaattaaaaaaatgaaaactga

Function

symbol description
ccdc186 Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle cytoskeletal trafficking. Predicted to be active in trans-Golgi network. Orthologous to human CCDC186 (coiled-coil domain containing 186).

NR:

description
PREDICTED: coiled-coil domain-containing protein 186 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914892.2 True 5073 mRNA 0.46 16 13091186 13113005

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding upstream 34411 13025631 ~ 13056775 (+)
gfra1b gfra1,gfra1b,LOC107707958,LOC107581544,LOC107755550,LOC107689950,LOC107702444 coding upstream 253803 12811647 ~ 12837383 (+)
bms1 bms1,LOC107689949,LOC107675025 coding upstream 475968 12596373 ~ 12615218 (+)
mxtx2 LOC108273977 coding upstream 494964 12594495 ~ 12596222 (+)
adgra1a LOC108273515 coding upstream 515642 12563497 ~ 12575544 (+)
dclre1a dclre1a coding downstream 32875 13145880 ~ 13155997 (+)
LOC113527338 dclre1a coding downstream 54081 13167086 ~ 13177922 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding downstream 80019 13193024 ~ 13195130 (+)
nrap nrap,LOC107755535 coding downstream 91321 13204326 ~ 13219416 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding downstream 214695 13327700 ~ 13331070 (+)
LOC113527319 NA non-coding upstream 24564 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 246625 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 432863 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 447660 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 540826 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 353760 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 401671 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 505659 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 580710 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 910582 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 69191 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 617203 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1005827 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1469917 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1804918 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 370296 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 900568 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1174354 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3742684 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4432788 17545793 ~ 17572065 (+)

Expression


Co-expression Network