LOC113527272


Basic Information

Item Value
gene id LOC113527272
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15605292 ~ 15614870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914901.2
ATGGTGTGTATTAAGGACTGTGTTATTGTACTTTCTTCATTTCCCACTGACGTGTGTGGAGCGATTGGGCCCCACAGATCAAGATACAGATTTCTAGGTTATGACAACACAGAAGATGGCTTCAACTGGAGATCCACCTCAAGAATCAGGATTATACTAATTGGACCCAGTGAAGCTGACATGGCTTCAACTGGAAACACCATCCTTGGAAGAGATATGTTTGGCTCTCGGAAAAGTAGCAAGTGCATaaagagggatggagagatagCTGGTAGAAAAATAACATTGGTAGTGACACCTAATCGATGGTCCAGCCTTCCACCGATCGACACCACAGAGCGTGATAAGCAAGAGATAATGCTCAGCATGCTTCTGTGTGATCCTGGACCTCATGCCATCCTTCTAGTCATTGGTGAGGAGAAGATCACAAAGGACATAACTCAGTCAATGGAGGAACACACAGAGCTTCTTGGCCATGAAGTTTGGGATCATACGATATTACTATACTCTTATGGCAATCAGCATGAAGAATGTGTCAGGAGTGCAGGAGAGGCTTTCGAGCAGCTTGCACATAAATGTGGAAACAGATATCATGTTCTCAACAACAGAAACAGTGGTGACAGCATTCAGGTCATAGAACTACTGAAGAAGATAGATGACATGTTGCAAGAAAACAAGGGCAATCACTGTGAGATAGATAGGAAGATCTACCTTCTACAGAAATGGAGGGAAGAAGAGGATAAACGGGCAGAACAAAGACTGCTAACAACACAGAATCAGAGAAAGATGCTGAGATCAAAAATTGgAAGCACAAGCCATATTTCTGAGATCAGAATTTTGCTGACAGGCTATCAATATTCTGGAAAGAGCTCAACAGGGAACACAATTCTGGCAGAGAAGGCATTTCCCTTAAAGAGGatcacaaaatgtgtaaaaagtcAAGGAGATGTTCAAGGAAGGCATCTTACTATAGTGGATACTCCAGGACGATGGCGAATTCACCAAGTCAAGTTTACTTCTGAGTTTTTCAAGCAGGACATAGTGCTTAGCGCAACTCAGTGTCCACCAGGCCCCCACATTTTGCTTGTGCTTGTCCGTTTAGACACTTCATTCACTGAAAACAACAGGAGGGCAATGGAGGGCCACTTGCAGCTTTTCGGTGACAATGTTTGGAGATACACCATGGTGCTGTTCACATGTGGGGACTTTCTGGGAGAAACAACGATTGAGCAGTTTATTGAGAGTGAAGGGGAAGCGCTCCAGTGGCTAGTGCAGAAATGTAACAACAGGTATCATGTTTTCAACAACAAGAGGGAAGATGATCGCTTTCAGGTTTCTGAACTGCTTGAAAAGATTGATGAGGTTGTTGCTAGTAATGGTGGTGGCCATTTTGAAGTGGATCAGATGATATTACAGGAGGTCCAAAAGAAGAGGAAGGTGGCAGAAGAACAAGCTAgaaagaggagactgaaggcaCAAGAGGAAcaaaaggggggaaaaatagCATCTTGTTCAGATTCtaaaaaaagtgacaaattaCTAATGAGGGCCTCACTCAGTGTTCCTGACCTCAACATTGTGCTAATTGGTTTTGAAAGAGCTGGAAAGACCACAGTTGGAAACATTATCCTAGGCAAAAACATTTTTCCCAAAAGAAAGACTTTACAGAGTGTGCAGCAACATGGACTAGTAGCAGGAAGACAGGTTGTTGTAGTAGACACTCCAGGCTGGGATTGGGAAAATGTTTTGAAGATAACGCCTGTGCTTGACTGGCAGATAGTGCAGAGTGTTCAGACTCCTTGTTCCAAAGTCGCACCTGTTGTATTCCTTCTGGCTGTGCGAGCAGCTCTTTCCTTCAAAGAGGTGAACAAACGCACAACAGAAGAATATCTGCAACTTCTTGGTGACTGTGTCTGGAGCCACACCATAGTGCTGTTCACTACTGGGGGCTGGATGGAAGACATAGACATAGAACAGCATATTGAGAGTGAAGGGGATGCCCTGCAGTGGCTTGTAGAAAAATGTGGGAACAGATACCATGTTCTTGACACTACAGGGAAGAAAGAAGATGTACAAGTCCCTGAACTGATGAGAAAGATTGAACAATTAGTGGCAAATAACAAGGACTGTCCTTTTCAGTTAgataaaaaaatctgtgagaCAGTTGAGAGGAAATACTCCATTGTAAGCAATCAAACCTCACAGAGGATGTTAAAAGACAGTAAGAAATACGGCAGCATGATCTGGCCTCCACCTAAcatgtgtgatgatgatcaGAGCTCTGGGTATAGCTCATTTCAATCTCTGCTGCCTGGGACTTCATCCACTCCATCATTAAGATATAACCCAACAGAGATGGGTCAAGCTCAAGGAATTCACTTCAGTAAGAGCAGAACTCTGGGAGACCTGTGTATTCCAGCACGCTCAAAAGCAGACCCTGACACTACCAGTTTGAAATCTATAAGAGAGCGAGCAGAAGAAAAGAGACTGAAAACTGAGTccctgaaataaacatttaaaaaaaagaaactgtctGTGAAAGGACTATAAAAGCACCATCACTCACCAATACAAAGTTAATGCACCAGATTTAAACTGATGTATTTTTGTCATATGCAATTTGATCCAGTGATGGATGTTAAAGTAGGAAAAACAACATCTAATGATAAAACTACTGGCAACAGCAAGTGATAAATAAAGGATCTATTGGCTTGTAAAACATCAGCATATTTTACACAGTATGTGCAATAAGAATAATTTGCGAATATAATGTGAAAACTGTAGAAAATATATCTGTTTTCTTAATGTTTTATACCGTATGTATGCTTCAATAGGAAATTTATGGTGGTTGCTATGATTTGTAATTTCATAACCTTtgtattataaggttctgtcTGAGTGAAGAATGAATGTCAGATAAAATAAGGTCATGATACCTtgtaatatatttgtaaagCACAACAACCTATCCGGTATGTACTCAGAATTTGTAGAGGTACTTGTTATAAATCTTACATGTTTTGATATGTCATGGCCAGCAGGGGGAGATATGCTACAGGAAATTATCCTAAACACTGCGTACTACAGACATACATGAGGGAgttattttactattttgacGCACATGAAATgtgctgttgttattattattattattattattattattattattattatctgtacATATGATCCATCTTGTACGTTAGCAGGGAGCATTCAACTTTTGTCAACTATCATAATTGTATAACAGTAAACTTTGGCAGACAGTATATGTTTTCTGATTTAGTAGGTCATACATTTAGGAAACTGTCAAAGCATTGtaaacatgatttttaatatGGCAAACAACCTTTTCCTGAGTATCACAATGCTCTCACCAAAAAGTGAGCAATCCCACCATCTGCAGTCATTTTGGTTTTACGTATGCAGGCGGTTCTGTTTAAAGGTCAAATGTTTGTGTAGGTGGCACATGCCATTTTGACTTGGGTAGTATTTTAATGGCTGGGAATGATAACTGTTCTATTTGAAATGGAAACCAGTACATGACTAGACTGTGTGATGGTGAAGAGAGATCTACAGTCCGCTACTACTGAGGACTAGTGGGATCATGTCAACACTGTGCTTATTCACTGTCCAAATGAATATATCACTCAATAAACATTCATCTAGATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914901.2 True 3678 mRNA 0.40 8 15605292 15614870

Neighbor

gene id symbol gene type direction distance location
svila svil coding upstream 796 15527593 ~ 15604496 (+)
jcada kiaa1462 coding upstream 90248 15482305 ~ 15515044 (+)
mtpap mtpap coding upstream 136138 15457999 ~ 15469154 (+)
bambia bambi,LOC108274338,LOC107749375,LOC107584374,LOC107676764,LOC107549411 coding upstream 247606 15354169 ~ 15357686 (+)
waca wac,LOC107749376,LOC107738973,LOC107665881,LOC107549412 coding upstream 254816 15323575 ~ 15350476 (+)
zeb1b zeb1 coding downstream 80893 15695763 ~ 15755399 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding downstream 1156367 16771237 ~ 16777328 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding downstream 1163419 16778289 ~ 16783706 (+)
ddit4 ddit4 coding downstream 1251340 16866210 ~ 16868429 (+)
narf narf,LOC107581643 coding downstream 1275494 16890364 ~ 16899730 (+)
G197174 NA non-coding upstream 336552 15267299 ~ 15268740 (+)
G196387 NA non-coding upstream 990635 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 1003853 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 1026834 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 1079209 14523905 ~ 14526083 (+)
G197397 NA non-coding downstream 90262 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 106725 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 239064 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 431433 16046303 ~ 16046505 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding downstream 434726 16049596 ~ 16049892 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 1281011 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 1571149 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 2046207 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 2583297 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 3131309 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 1240819 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 1930923 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 2540275 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 2827016 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 3191207 18806077 ~ 18812262 (+)

Expression


Co-expression Network