cyth3a (cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157)


Basic Information

Item Value
gene id cyth3a
gene name cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10239770 ~ 10254637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914923.2
CTGAATGAAGCAGCTCTGTCGCTCTTTCAGCTTTTCTCCGTGGATCGGACTGCGTGAATGTTGGCGATATGTGCACTGAAATTTGACCTTGCTTTACGAGAAAGCTTCATTCTGACCGGCAGTGGACGCGTTAATAAGAGGATCCTGTTGCTCTGCAGTTGGGTCACCTCAAATGTGAAAGAGGTGGAAAGTCAGTAAACAGGCTGTCTGACcttgtgtttggttttgttgtttgtgaTAAGCTCTTTATCTTAGATCTTTCCCTGTCACGAACATGGATGAGGACAGCACAGTACCTGAAGATCTGTCTCTAGCAGAAAGGGATGAACTGTCCAACATTCGacgaagaaaaaaagaattacttGATGACATTGAACGGTTAAAGTTTGAGATTGCTGAGGTGATGACAGAGATTGAACATTTAACATGCATGGGAGAGACaaAGACTACTCAGAGGAATAAGCAGATGGCTATTGGAAGAAAGAAATTCAATATGGATCCTAAAAAGgGTATCCGGTTTCTTTTGGATAATGACCTGTtgcaacacacacctgaggaCATTGCTCAGTTCCTATACAAAGGAGAGGGCTTGAATAAAACAGTCATCGGAGATTATTTAGGGGAAAGgGATGATTTCAACATCAGCGTTCTGCGCTTTGTGGAACTTCATGAGTTTGCGGACCTCAACCTAGTGCAAGCTTTAAGGCAGTTTCTGTGGAGTTTCAGACTCCCTGGTGAGGCTCAGAAGATTGATCGCATGATGGAAGCTTTCGCATTGCGATATTGCCAGTGCAACCCAGGCGTCTTCCAGTCCTCAGACACGTGCTACGTCCTGTCATTCTCCATCATTATGCTTAATACCAGCCTTCACAACCCCAATGTCAGGGACAAGCCCACTGTTGAGAGATTCATCTCTATGAACCGTGGCATCAATGAAGGTGGTGATCTGCCTGAGGATCTGCTCAAGaaTTTATACGAAAGCATTAAAAACGAGCCCTTCAAAATCCCTGAAGATGATGGCAATGATCTGACGCACACATTCTTCAATCCAGACAGGGAAGGGTGGCTACTGAAGCTAGGAGGAAGAGTGAAGACGTGGAAAAGGAGATGGTTTATTCTCACTGATAACTGCTTGTATTACTTTGAATATACAACAGACAAAGAGCCTCGAGGGATCATTCCACTGGAGAACCTTAGCATAAGAGAGGTGGATGAGCCAAGAAAACCAAACTGCTTTGAGCTCTACAACCCAAGTCATAAAGGTCAAGTGATCAAGGCGTGTAAAACAGAGGCAGACGGCAGGGTCGTAGAAGGGAACCACGTGGTGTACAGAATATCAGCCCCTACTCctgaggagaaagaggagtggATCAAATCCATCAGGGCCAGCATCAGCAGGGACCCTTTCTACGAGATGCTGGCGAGCAGAAAGCGGCGTGTCGCCACTAAGAAGTGACAACAGGATGACCTTTGCTGGAGAGCTGATCGCTAATAGAGAGTCTGTTGTCTGCTCATCTACAGGGGAGCGTATTAAATCAACCTGAAGGAGGTTAGCTGCAAGACACAAAGACCTCCACTCTGAGCATCAAAGACTCTCAGCAGTACAACTCTTCTTGGTTGGTGCATACTTTATCTGGTGATCTGCAGAAAAACTGCAGTATTCATTATTTGTTGGTGAGAAGATTGACAAAATGGACATTTGCTTGTGGTGCGACTcacaaaagtacatttttaaaggaTAGCTGTGATTGTAACACAGTCCCTACCCTATGTACACCAATGGAAACTCTTCAGGTTCAGCAGCAGaatgaaacacacagacactgctgaGGAGAGTCAGTACCACACTGCCCTCTGTTGATCAACTGCAGCAATtaccacaattttttttaaatattattttgtaaaattggACTCTTACTCTCACGTTATCATTACCTTATTGACACCTATTTACCTCAGAATAGAGACGCTGATAGCAGTGCAAACTGGTCAAAAATAAATTTTGGGCCCAAACTTTTCTGCAATTTCCCCTAAACAGGGGGCCTTTCAGGAAATGAATTattctattatttaaaattattttatgatcACAGATGTATCATGTGATCAAAATCAGCAGGACTGATTATGTAGAGTTTTGCAAtgctactattttttttcaacttttttagTTCTAGGCAAATGAAGGATGTTTCTGTTGTGTCTGTGATGCCTTAAATGTTTTTTGCGAAATTCAGTCTTTGGTTACaggattttattataataaattatttattttatcccaTTGTCCCAAAACCAGTTAACTCTGGCTTCCACCTAAATCACAGGCCAGATTCCCCTCAGCCTAACtggaataaagaaaatgtataattgtgttGGTCTTTTTGTGAAGCCTTGGAGCTGAAACAAGGGTATGCTGGTCTGActgaaaaaggaataaaaataggCCATGTGAATTACGAGTATTTTTTATAATCTTAAACTGGTCTTTTAAAATCCCTAAGTGGTAACTGGTGAAGGTCCATGAGGTTGTTCTTACACATTTTTTGAGGGCGAAGGCTCAGTGTGGGGGAAATAGGAAACGATACAAAATGTGAATATGTCTACTGTGAAAACACAAATTCAGTGagtgataaataaaatggaaattgtAAGAATAA

Function

symbol description
cyth3a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH3 (cytohesin 3).
cyth3 Enables guanyl-nucleotide exchange factor activity and phosphatidylinositol-3,4,5-trisphosphate binding activity. Involved in Golgi vesicle transport. Located in cytosol; nucleoplasm; and plasma membrane. Is extrinsic component of cytoplasmic side of plasma membrane.

NR:

description
PREDICTED: cytohesin-3-like

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914923.2 True 2663 mRNA 0.42 14 10239770 10254637

Neighbor

gene id symbol gene type direction distance location
atad1b atad1,atad1b,LOC107669218 coding upstream 24815 10201989 ~ 10214955 (+)
rnls rnls coding upstream 72855 10135916 ~ 10166915 (+)
ankrd22 ankrd22 coding upstream 114928 10118888 ~ 10124842 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding upstream 137982 10097369 ~ 10101788 (+)
ch25h ch25h,LOC107753436,LOC107683723 coding upstream 161655 10077017 ~ 10078115 (+)
pms2 pms2 coding downstream 26049 10280686 ~ 10290416 (+)
rsph10b rsph10b coding downstream 35820 10290457 ~ 10296523 (+)
bhlha15 bhlha15 coding downstream 101140 10355777 ~ 10359207 (+)
trrap trrap coding downstream 163264 10417901 ~ 10487467 (+)
fam20cb fam20cb,fam20c,LOC108274201,LOC105888715,LOC107699871,LOC107669229,LOC108432010,LOC107734234 coding downstream 277780 10532417 ~ 10564750 (+)
G193842 minpp1 non-coding upstream 13451 10224702 ~ 10226319 (+)
LOC117598497 NA non-coding upstream 90984 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 412906 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 415302 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 458815 9694909 ~ 9780955 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 70319 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 95562 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 339592 10594229 ~ 10662463 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding downstream 405241 10659878 ~ 10660950 (+)
G194113 NA non-coding downstream 456684 10711321 ~ 10712015 (+)
arhgap23b LOC108273815 other upstream 548175 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 724154 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 725935 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 727139 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 727369 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 390189 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 978953 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1031560 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1359262 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1808171 12062808 ~ 12085359 (+)

Expression


Co-expression Network