LOC113527290 (ffar4)


Basic Information

Item Value
gene id LOC113527290
gene name ffar4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8301334 ~ 8302419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914925.2
ATGGCGCTCTTGGTCCTGAGTCGAAGAAGGAACAGACTAGCTGGTGCCTCCACTACCAGAAAGCTGCTGATAAACTTGGCTGTGTGTGAcatgatggtggtgtgtgtgtgcatgcctgtgAACTTGGGTCACCAGGTGTACAATGCTTGGGTGTTTGGGGACTTGTTGTGTCGCGCGGTGCCGTTCGTTCAGGCCGTTTCCGTGTCCGCGAGTGTCTTGAGCCTGGCTGTCATAAGCTTGAACCGGTACTACAACGTTCACAGCCCACTACGTGCACGATCCTTCTTCACCGGTAGGAAGATTTGTGCGATGATAGCCATGGTGTGGACGGTGTCGTCCGGGCTGTGTGCTCCGTTGGTCTTTATGAATGAGACCAAGATGCTTTCCTTGACAATGGATGGCTCACACGTGATAACGGTGTGTGTCGAGGCCTGGTCTAAAGCACGACTGCGCCTAGGCTACAACTTTTTACTTTTCTGCGCCCTGTATGGCTTTCCAGTCCTCTTCAACCTCATCATATGTTTTCTCACTACCTGGAAACTATGGAGTGCAGATGACCAGTTTAGTGAAGCTGCCATGTCGAGCTCAACCCGGTCAGCAGCGCGGCTGAAGTCGCGCAAGAAAATAGCCAAGATGGTGCTAGCCCTGGTGGTGCTTTTTACCTTCTCCTGGCTTCCTCTCTATGTAGTGGATATCTGGATTGACTTCAACATGCCAGGCTCTTTGGACAGAGAAGTTCTGGGCCACGTTGAGCACAGTTGGGTGTTGCAGAGCCGACCTTTCGCGCAGTGGCTTGGCCTCACCAACTCAGCACTCAACCCGCTCTGCTACTGCTTTGTGGGCGACCTGTACAGGTCTGCAAAAAGGTTCAGGAAGAGCTACAGAGAGAAAATGGCCTCTGTTTTTAACGCGTCTCAGAGACCATCTTCCTCCGTGAACTCTGCCCTCAAACTTCAGTCGTATGCGTCATCCACAAAATACAGCACTGGAAAGCAGAGATGGGCAGGCTGCTATATTTTCAGTAACAGATTAAACAGAAGCAAAAGCATGTCTgccataagtgtgtgtgagactgtatTTGGTTGA

Function

symbol description
ffar4 Enables arrestin family protein binding activity. Involved in several processes, including negative regulation of interleukin-1 beta production; positive regulation of cytosolic calcium ion concentration; and white fat cell differentiation. Located in bounding membrane of organelle; cilium; and plasma membrane. Implicated in obesity.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914925.2 True 1086 mRNA 0.51 1 8301334 8302419

Neighbor

gene id symbol gene type direction distance location
adam8b LOC108273892 coding downstream 18472 8269591 ~ 8282862 (-)
exoc6 exoc6,LOC107654070 coding downstream 40224 8207944 ~ 8261110 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding downstream 100114 8198084 ~ 8201220 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding downstream 160274 8021534 ~ 8141060 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding downstream 311265 7979556 ~ 7990069 (-)
crym crym coding upstream 137768 8440187 ~ 8445679 (-)
snu13b snu13b,nh2l1,LOC106589607,LOC105031476,LOC105898651,LOC101154660 coding upstream 145508 8447927 ~ 8450462 (-)
trnap-agg_9 NA coding upstream 155908 8458327 ~ 8458396 (-)
trnal-uag_3 NA coding upstream 172840 8475259 ~ 8475340 (-)
si:ch1073-272o11.3 NA coding upstream 212142 8514561 ~ 8521374 (-)
G192685 NA non-coding downstream 174777 8071922 ~ 8126557 (-)
G192681 NA non-coding downstream 205977 8090685 ~ 8095357 (-)
G192665 ado non-coding downstream 324180 7974214 ~ 7977154 (-)
G192611 NA non-coding downstream 423635 7874766 ~ 7877699 (-)
G192585 NA non-coding downstream 458700 7842060 ~ 7842634 (-)
G192881 sun1 non-coding upstream 76808 8379227 ~ 8383599 (-)
G192937 NA non-coding upstream 126885 8429304 ~ 8436084 (-)
G192948 NA non-coding upstream 149778 8452197 ~ 8455303 (-)
G192945 NA non-coding upstream 161890 8464309 ~ 8541281 (-)
G192953 eef2k non-coding upstream 178001 8480420 ~ 8513470 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 533822 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 705453 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 882956 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1706944 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 2510064 5768528 ~ 5791270 (-)
si:dkey-94l16.4 LOC108273749 other upstream 545243 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1065798 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1213395 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1213653 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1284747 9587166 ~ 9590116 (-)

Expression


Co-expression Network