tbx6 (tbx6)


Basic Information

Item Value
gene id tbx6
gene name tbx6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5494906 ~ 5499745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914933.2
GGCTGTGAAAAGAAGCAAGActagaagaaagaagaagaagatactGAAGCATAAGACATGTTAAGACATTCAAGATAAGTTGGAAGATTGGACACTAGAAAGGATTTATTGAAGTtctaaagggaaaaaagaagggaaaCAGGCAAGAGGATGTTGGGAGTAGAGATGTATCCGAGTTTAGCTCTTGCAGCACAAAGACTTGGAGACTGCTGCTATCGAGATCGAGAGCCCCCTGCGCACGTGCCCCTGTACCCTACATCATGTGACATGGCGGCCCGAAGCCTGCCTCCTCGCCTGCTACCCCCGCCCCCGGCAAAAAGAGATAACATTGGGAAATCTGAAGACATTATAAAGATAGAGCTGGAAAATGTATCACTATGGAAACAGTTTAGCACTGTTGGCACAGAGATGATCATTACCAAGAAGGGCAgACGGATGTTTCCTCAGCTAAAAGTGAAGGTGTCTGGCTTGAACCCATCTCTGCGTTACATCCTCCTGCTGGACATCATACCTGTAGACTCCTTTCGCTATCGGTTCCAAGATGACAATTGGCAGGTGGTGGGAGGAGCTGAAGCTCGACTTCCAGACAGAGTGTTCATCCACCCAGACTCTCCTGCAACTGGTGAACACTGGCAGAACCGAACCATCTCTTTCCACAGAGCCAAACTCACCAACAACACACTGGATGGACAAGGATATATCATTCTGCACTCCCTGCACAAGTACCAAGCACGAGTGCATGTGGTTGAAACCAGAGATGTGATGATGTGGGGTGGAGCTCAACACACCTTCACCTTCCCTGAGACCCAGTTCATCACTGTTACAGCCTACCAGAACAACAagATAACTGAACTGAAGATCAATTCCAATCCCTTTGCCAAAGGTTTCAGGGACAATGGCATGAACAGCAAGAAACAAAGAGAAGCAAGGCAAAAGAGGAAATTAAACCAACCCAATCAAGAGGAACCTTTAGACATAGAATCATGTGACCCGTGTGATTCCACCGAGGTGTTACCACAGCCAATGGAACTGGAAAGcaccactctgtctctgtctgattCAGGCTTCtgctctgatgtgccatcttTACCAGAGCAGACAGTACAGCAACATAGCTCTGGTCAAACATTTCTGAGTTCCCAGATGACCCAGGTGCCTGAGATTTCAGAGATTCCAAATTCAGTAGGGAATCAGTCTCAGGCAACCTCAAATAATGAGGTGAACAATGGATTGCTTGATGGGTCTACTCAGATGATAGGCCCTTCTTCATACACCACATTTGCAGCTGCTTCAATTACACCCTCATCTCATTTGTCAGTGCCTCTATCACAGCCTACATCCTTCTATTCCTCTCTGTCCTCCACTCAGACTGATCTACCATCCTCTCATTCCAATCCAACATCTGTGCAAGATTATTCTTCCATAGTTTCAGCTCACTATCCTACCCTGGATTCCTCTTCTCCAATCACCTCTTCCTCTACCCCTGCCCAAGATTCTACACATACCTCCATCCGTCACTCATCCTCTTCTACCCAACTGCCTTCTTCCTCCTACCACTCCATTCTTCCATCCCAAGAAAACCTAAGCCCTCACACACCTACAAACCCACCCTTCCATTCTCTTCCTCAACCTCCTTGCCAGTCAATCAACAATTGTGCTTCTGGTCTTTCTGTTGACACAGCTCAGAGCCAGGCTATTGGTGGTTTGGCTTCCTCCAATTCTACACCTTCTGCTGTCCAAGACTCCACCCCAACTGCCTTCCCCTTCCCACCAGTGCAGTCCTCCAACAATCCAGATTCCACTACTCCCCCATCCCAAATCCTATCCCAAACTGCCTTTCCCTTTCCTCCAGTGGCACATCCAAATGGACAACCAGATTCAAATCAAATCCCAACATCTTTCCCTTTTAATTCTGTGCCAGAATCCAACTCCCCGCCTCTAAATACCCCATCAGATCAGGATAGCAACACCACTGCTTTTCCTTTCCCACCACAACCCAGCAGTACAAATTCTTCAACCTCTTTGCCTGTACAAACCCTAGCACCTTACTCTTTCCAATCATCAGCAACATCTGATATGAATCCTTCATCTTACCAAAACCCAACAAATTCAGCAACTGGATTCTTCACTATGCCTTCCAGTTCTGTAAATGGAGCCCGTTCACAAGTCATTACCAACCCCATAGTCAATCCAATCCCTGCGTCTTCACTCTCTTCTCTCCCTGCATCTCTGCCCACACATGTAGTCTCTGGGTCCATTTCTAACTCAACTCAAACCTCTTACATGTCTTATCCCTTACCCCCTTCCATCCCATCTGGTCCCCCTCCTCTCCAGAATGTAGCAATGCCAGCTATTGGGTCTTCTCAGGTTGTTCCAGCTCTTCCAAATATAGCCCAGGTCCAGCCAACTATGCCCCAGTCATTCTCAACCTCCACTTTTTCCCATATCCCTCCCCAGTGTGCAAATTCTTCTCAAATCCCATCACAGTCCTTTGCACCTATGCCAGCTCCTACAGCTTCACTTCTTCCACATTCAGCCCTACAAAACCACCCCATCCCACCAGGATCATCCCATACACAGTACCCTGTTACTTCCACTGCATATCCTCCAGTAGCGCCTTCAGAGATAGGGTCCTTTTCTCAGCTTAACCCGCCTGCCCCCTACCTTTCTGATATGGTATTGCACCCTTCTCTTCTCCCTTCATTAGATAACACCCTGCCCTCTTCCGCTACTTCCCTTTATAACCCATTTCCTTCTTATCCTCTCCGCCTCTGTCAGGACCCCCGATCCTCTTTCCATTTACAGCTCAGACACATTTACAGGCAGCCCCAACATGTACATGCTAACAGCCAGGGGTCCTACCTAGACCTTGGAGGAAGGCCTGCATTTTGAGAAGTGacacaaaatgttataaatgagaTGAAGGAATTTCTGCCGACGTCAACAGATGACAGACTACAGCTTTAAAACTCTATGTGATAgatttagtgtttatttttgcattcaGGATAGATTAATcaaatgtatcatttttttttaattattttaaaacatctgtATACTGAATCTAGCAAATAaagtgtgtttaacattt

Function

symbol description
tbx6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including regulation of skeletal muscle tissue development; somatic motor neuron differentiation; and somitogenesis. Located in chromatin. Is expressed in several structures, including margin; mesoderm; presumptive mesoderm; tail bud; and trunk. Human ortholog(s) of this gene implicated in spondylocostal dysostosis. Orthologous to human TBX6 (T-box transcription factor 6).

NR:

description
T-box transcription factor TBX6-like

GO: NA

KEGG:

id description
K10180 TBX6; T-box protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914933.2 True 3094 mRNA 0.46 8 5494906 5499745

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 10229 5477331 ~ 5484677 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding upstream 24798 5464205 ~ 5470108 (+)
dcxr dcxr coding upstream 51028 5436259 ~ 5443878 (+)
rfng rfng coding upstream 60427 5422799 ~ 5434479 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding upstream 90100 5383011 ~ 5404806 (+)
LOC113527309 LOC108274209,LOC108273638 coding downstream 126646 5626391 ~ 5665967 (+)
mapk7 mapk7 coding downstream 182296 5682041 ~ 5689581 (+)
mmp25b LOC108273420 coding downstream 247128 5746873 ~ 5766384 (+)
kansl1a LOC108274073 coding downstream 441204 5940949 ~ 5964560 (+)
scn4aa scn4a,scn4aa,LOC108435052,LOC107598592,LOC107708946,LOC107732174,LOC107664628,LOC107654028 coding downstream 524022 6023767 ~ 6061324 (+)
G191273 NA non-coding upstream 112097 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 128548 5366136 ~ 5366358 (+)
G191266 NA non-coding upstream 131403 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 185532 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 212263 5269247 ~ 5282643 (+)
G191310 NA non-coding downstream 12946 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 96977 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 114662 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 171269 5671014 ~ 5671252 (+)
G191387 NA non-coding downstream 172397 5672142 ~ 5672495 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 154343 5330042 ~ 5340563 (+)
gngt2b NA other upstream 189997 5303077 ~ 5304909 (+)
G190865 NA other upstream 655537 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 898877 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1564463 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 230409 5730154 ~ 5740905 (+)
G191581 NA other downstream 469998 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1225576 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1322995 6822740 ~ 6836383 (+)
tfam tfam other downstream 1928800 7428545 ~ 7436372 (+)

Expression


Co-expression Network