frmpd2 (frmpd2)


Basic Information

Item Value
gene id frmpd2
gene name frmpd2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4651720 ~ 4669858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914937.2
CGTACCGCATAGGATGCTTGAGAGGATTACTCCCCAGACAAGCAGCAGGACCGGCAAAAGAAAACATCATTTGGGAGTAGTAAAGTAagGAAGGATGAGTACTTTTGTGAGCCTGTTGGAGGTGCTGGAGTGCCGAGGGTCCGCTCTGGACGAGGACGAGGTGTGGGCAATCCTCCTCACTGCAGCAGAAACCTTAACAAGCATCTCAGATAAAGTTCCTGGTAATCTGTGCAGTATTATTAGCCCAGGCTCCATTTTGATCTCACCTAGTGGCAGTGTTGCCTTCAAAACCTGTGGCCGCACTGACAATGTGGCATCCTTCACCTCTCCTGAGATGACTGTGTCTCAGTCTTCCTCCAGTAAAGAGGCTGTGGAGAAGATGCTAGTTTACTCTCTGGGAATGAGTCTGTACTGGACTGTAGATTATCAGCTTCCTCAAAATCAGCCTGTCCAGCTTAGTGATCACTTGAACAGCCTTCTACTGAGCATGTGTGAAGAACAGGCTCACAGACGTCCAAATCTGCTGGCGGTGCAGCAGCACTGTGAGCAGCACCAAAAGAACGCTCTCCTTCCACCTCCAGACAGAATAATCAGGCAGCTGGTCCAGGACGTCCTACAGCACTCGgCAGAGAATGCGTTAAGTAACTTTACACTGGTAACAGATCGAAGTCAGCTGATTAGACACAGGCTTCGAGGAGGAGACATGGGGAATTTTTCTTGGGCCCCAAAAGCAATCAGCTCACCATCCCACCCTTTCCAGACGGAATATAACAGAAACTCCCATTCCTCCCATCACAGAGGGAGCAGCAGCAGTCCATACCTTGACATCCAAAGGCAGCTTAATGACAGATCTAACCAGTTATTTGGCTCTTCACTCAGTCTCAGTGAGAGGAAGCTCAAGAACATGGGGCCAGAGTTTGTTAGAATTTTGGATGAGCCATTTATTACCTTGGAGCTGCCAAGTTCCATTGTGTCAAAGAAAGGGAAGTCATGTTCAACACAAAGGGATGTGAGAGTGATTATGCCAAATGGACAGACCATCCTAGTCAAGTGTGATGTCAAGACTAGAGGAGGAGATGTATTTGATATGATTATTGCCCATTCAAAAATGGTGGAGCACTTCTACTTTGGCCTTGCCTACACTGACAATACCAATGAATTCTTCTTTCTGGACAACGAAACCCAAATTTCCAAAATTGTCCCAGAGAGCTGGAAAAAAGTACCCATGTCCACGTTTGTTCTTCACGTCCGAATCAAATTTTTCATCAATGACGTCAGTCTACTTTTACACAAGCTGACGCGACACCAGTACTACCTGCAGCTCCGGAGGGATGTTCTGGAAGACAGACTGCCCTGTAATGAAGAGACTGGCCTTTTCCTCAGTGCTTTGGCTCTGCAAGCTGAATTTGGGGACATTTTGCCTGAGATGTATGGGAAGGAGTACTATCAGCCTGAGCACTACATCCCTAAGAGCATCATGAAGAAAATGTCCATGCCTTGCCTGAAACAAGAGTTACTGCGATTACATGCTAATAATGCGAACATGACTGCTGAGGAGTCTGAGTTAGAATTCCTCAAGGCCATCCAGCAGCTTCCGGAGTATGGTATGCTTTTTCATCATGCGGCCTGCCAAAAGATGGTCAGCGCAGGAGAGCTGCTCTTGGGGGTGTGTGCCAAAGGCATCGTTGTGTATGAAGTTAAAAATAACACCCACACCATGAGGTTCAGATTCTACTGGAGAGAAACCATCAATATCTTCGCAGCTaaGCGTAAATTCATAATTGTGAGCAGCATCAGTAAGAAGAAGCACACTTTTCATATGGAGAAGTCCAGAATCGCAAGGTACCTCTGCAGCCTGTGCACAGCACAGCACAAGTTTCACACGGAGATGAGCTCTCGCCAGCTGAGCCACAGTCTGGTCTCGGATACTCCAACAAGTCCCCGAGCTCCTGCGAGAGAGATTCTCTGTGTAACTTTGAAGAAAGATGTGAAATTAGGCCTTGgtattgtaattgttggagAAGACAGTGCCAGTGGTCTGGATCTAGGAATTTTTGTTGCATCTGTTGTGCCAGGAGGACCAGCTAATAGGGATGGACGAATCAAACCAGGTAGCCGCTTGATCTCACTGAATCAGATCAGTCTGGAGGGAGTCCCCTTCAAAGAAGCAGCAGAAATCATACAAAGTAGCCCCAACCAGGTGGAGCTCATCATCTCCCAGTCCAAAGGTAAGAGTAAATCTGGTAACcagcatgatgtgtttgtgtatttctatTTTGTAGACACTCAAGCAGAAGATGGTCTTGATGAGTTGGTGACGGTGATGATGACACCAAAAACTGGGCGTAGACTCCATGTGCCTGAAGTGCACGTCCTCAGGGTACAGGTATGGCACAAGCTACAGCAATCAAATTCAAGAAACAATTGCATACCTATATTGTTTCATATTCTGAGAACAGAGGAGATCACAGTGCAGCTGAAAAAAGTCTCTGGCAGTTCGGGCATTAGCATTGCTACAGGGCTGAATGCAGGTCTCCAATCTGAAGGAATTTACTTCGAGAGCCTGTTGCCTGGGGAAGCAGGAGACCAAGATGTCCGCATACAATCAGACCAAAGCCTGTTAAGAGAAATGAGGATCAGACTGTTTGCCCCTTGTGGCAGTCATAACTGACTTGGTTATAGGGTGACTCTTAGCACATCTTTGTGTGTCTAATGGGTGATAGTGTCTTAGAGGTGGATGTAACCAGACTGCAAGGTTACAGAGGACATCTGGCTGGTGAGCTCCTGGCCAAGCCCAAGAAGGTGGCGACTCTGATGCTTGAGAGGAACGGCACTCCCGTGATGTCATGCAACTTTCTGAGTCCCAAGCCTGAGGATACACTCTCTGTCCATTACCATGACGACGCCCATCACTGTTAGACCCCATGATGAAAGTTTTGCATCTGAAGGTAATAGCATGAGGGTGACCTTAACGAAAGGTGTAAATGGCCTTGGCATCAGTTTCCTGCTGTCAGAGTTGAGCACATCCCTGAACTGTGGAACTGTAACACTGTTTCCAGGCTAAGCAGCAGAAGAGGGAGATGTGATCCTGGCTGTTAATGGAGAATCACTTGTGTGGCTGCCATGTCAGGGCAAAGCTTTGAGAGAGTCTCCCACTGCACATTTGTGGAAATTGTCGCTTGTGAATCACTCTGCAATGAGTTATGGCCCActtatgataaaaataaattgtgaattTAACAGGTAAAAATATCAGTAGTTTAGAATACCTTATGTATAAATAGCATAATAATTATTGTgggtctttttttgtttttgttcttgacTTCTTGCTCCTTTTTTATGGGTCATTTCAGGATATCCCCTGTATTTCCATTACTGATTTTTAATATGAATGCATAAGATGGAAGGGAGTTTGGATGTAACGTACTAGCAGGAGAATTCACAG

Function

symbol description
frmpd2 Predicted to enable 1-phosphatidylinositol binding activity. Predicted to be involved in bicellular tight junction assembly. Predicted to be located in cytoskeleton. Predicted to be active in basolateral plasma membrane and bicellular tight junction. Orthologous to human FRMPD2 (FERM and PDZ domain containing 2).

NR:

description
PREDICTED: FERM and PDZ domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914937.2 True 3448 mRNA 0.46 25 4651720 4669858

Neighbor

gene id symbol gene type direction distance location
si:dkey-191m6.4 LOC108274024,LOC108437306 coding upstream 26373 4600300 ~ 4625347 (+)
vstm4b vstm4,LOC108437315 coding upstream 65220 4570058 ~ 4586500 (+)
LOC113527299 NA coding upstream 84198 4563813 ~ 4567522 (+)
LOC113527300 NA coding upstream 103990 4543977 ~ 4547730 (+)
trnae-cuc_25 NA coding upstream 218408 4433241 ~ 4433312 (+)
gdf10b gdf10 coding downstream 41637 4711495 ~ 4714663 (+)
gdf2 LOC108273396 coding downstream 46208 4716066 ~ 4718035 (+)
rbp3 rbp3 coding downstream 52654 4722512 ~ 4726063 (+)
antxr1c antxrl,antxr1c,LOC108437311,LOC106589351,LOC105893913,LOC107693662 coding downstream 61272 4731130 ~ 4750850 (+)
mms19 mms19,LOC107578808 coding downstream 117908 4787766 ~ 4810533 (+)
G190797 NA non-coding upstream 22844 4625619 ~ 4628876 (+)
G190795 NA non-coding upstream 54791 4596690 ~ 4596929 (+)
G190775 NA non-coding upstream 164964 4486523 ~ 4486756 (+)
G190748 NA non-coding upstream 354481 4296393 ~ 4297239 (+)
G190668 NA non-coding upstream 365069 4232895 ~ 4286651 (+)
G190964 LOC108274181 non-coding downstream 389659 5059517 ~ 5063419 (+)
G191026 g6pc3 non-coding downstream 586583 5256441 ~ 5262085 (+)
G191032 NA non-coding downstream 599389 5269247 ~ 5282643 (+)
G191258 NA non-coding downstream 638361 5308219 ~ 5309374 (+)
G191266 NA non-coding downstream 693430 5363288 ~ 5363503 (+)
lrrc18b lrrc18 other upstream 55691 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 721277 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 868111 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 928477 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 1198294 3430313 ~ 3453426 (+)
G190865 NA other downstream 85239 4755097 ~ 4839369 (+)
gngt2b NA other downstream 633219 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 660184 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1060296 5730154 ~ 5740905 (+)
G191581 NA other downstream 1299885 5969743 ~ 5983237 (+)

Expression


Co-expression Network