zeb1b (zeb1)


Basic Information

Item Value
gene id zeb1b
gene name zeb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15695763 ~ 15755399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914941.2
ggaaggagggaggggagGTGAAGGGGAGGTGTGGGGGGCCGAGAGGAGGTGACTCTCCGCCACGGCATTTACACACAGCGAAAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCAAAGAGGACGAGCGtgaGTAACTACAGCCATGTACTGGAAGGCCAGTCAGACTCTGATGATGAAGATAAGCTCCATATCGTGGAGGAAGACGGGACCCCTGTGGATGGAGCTGATGGTGACAGCGTTGCCCACGACGATGATGCCAATGGCCCTGAGGACCGATGGGATGAAGtgaaagaggagtgtgtgtcagaggagGATGAGAGGAGTAGGGATGCTCTTGTTGAGGAAATGCTTCAGCAGGGAGACACGGCCGTCATCTTCCCGGAGGCACCGGAAGACGAACCACGCCAGGGAACACCGGAGACCAGTGGCCATGATGAgaatggcACACCAGACGCGTTTTCTCAGCTCCTCACCTGTCCCTACTGCTCTCGCGGCTACAAGCGCTACACGTCTCTGAAGGAGCACATAAAGTATAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCACTTTGCAGCTACACTTTCTCCCACCGCACACAGCTCGACCGACACATGAGCGCACACAAAGCAGGCAGAGACCAGCGGCATGTAACCCAAACAGGGGGTGGAGGAAACCGTAAGTTTAAGTGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGTATCCACAGTGGGGAGAAGCCATACGAGTGCCCCAACTGTAAAAAGCGTTTCTCTCACTCTGGCTCCTACAGTTCCCATATCAGCAGTAAGAAATGCATCGGCCTCATTTCCGTCAACGGCCGGCCACGACCCTCGCCAGCCACAGGAGGCACCAAAACCCCTCAGTGTCCTTCACCATCCCTGCCCTCCTCCCCCGCCACTGCCCGGACTCAGATCCAGGACAAACTGGACCATAGTAAACCCCTGCAGGAGCAGCTCCCGATCACACAGATTAAGTCTGAGCCATTGGACTATGAGTACAAGCCTGTGGTAGTTGCCCCGGCTGCCCCTGGAGGAGTAAACGGGGTTTTCCAAGGAGGGGCAGCAGCACCACTACAGGGGGCAGTGCAGGCTGTGGTCCTCCCCACTGTAGGACTGGTCTCCCCAATCAGCATTAATCTAGGGGATTTGCAGAACATGCTAAAGGTGGCAGTGGATGGGAATGTGATCAGGCAGGTGTTGGAGAATGCCCAGACCAAAGGCCAGCCTGCAAGCACCGGCAGAGTGGCTATTGCACAGGCTCCTCAGCAAGTCATCCAAGCCATCAGTCTTCCCATTGTTGACCAGGACGGTACCGCCAAGATCATAATCAACTATAGCCTTGACCCATCGCAGACTCAGGTAGCTCTGCAGAACTTGAAGAAAGAGCCAGTGGGGCAGAATACAGACTCCTGCAAGGCTGAACGACTACCTGAGGACCTGACGGTTAAAAGCAAGACAACCAGGGACAAAACCACCATCACTGTGGATGAAGAATGGCAGCAGGAGAAGGGCAAACTCTACAATCACACGACAAACAAACACTGtggcaaggaggaacaggaggttAACggaacacacttggaggaaaagCCTGAAGCAGATGTTGAACTGTGTCCTGGGCAGCCCCCACTGAAGAACCTTATGTCCTTGCTTAAGGCTTACTTTGCCTTAAACGCAGAACCTACCAAGGAGGAGCTGGCAAAGATATCCGAGTCAGTCAATCTCCCTACTGATATTGTCAGGAAGTGGTTTGAGAAGATGCAGAATGGGCAGATTCCAATGGAGGTCTCTACAGCCACACCCCAGACTAACGGGATAGACATTAATGGCActccggaggaaacccccaatcCGATGTCAGAGCAGGACAGCAAAAGGAAccaagaggaggaggaggagatggagctTCATAGCCCAGCAGAAGGCACTACAGCTGGGATAAGTGGAACAGAAAATGGCCCCACATCCCCTTTACCACTAAATCTATCTGCAGATGGGCCTGTGCCAGCCCAGACTGCGGAGGAAGGAGAGGGACCGCTTGATTTGTCTCTCCCAAAATCTGTAGCGGCAACAAATACAACCAGCGCTCACTCTGTTTACTCAGCTCAGGACGAGCCTCTGAACTTGGTTTGCACAAAGAAGGAAGTGCTCAGCAATGCAAGCACCAGCACTGCCATCTATGCCAGCCAAACAAGTGCCAATTCCCTGAACATTGTGACCACTCAACTGCCCACCCTCGTGGCTATCGCCAAGCAAGGCCCCGGGCAGTGCCTGCGCACCCTCACCACCACTAAACAGACCATCTTAATCCCACAGCTGGCCTACACCTACACCACTACAGCCTCCAGCCCAGCAGGGGGTGACACACCACAGAAGGCCATACTGCATGTCAATGGCGTCAAGGAGGAGAAGCAGGAGGCCGGTTCAGAGGTGGCTTCAGTGCTGGAGGAGCAGACAGACTCAGACTCTGGGCCGGtgaggaagaagatgaagaagactGAAAATGGCTTGTATGCCTGTGACCTGTGTGACAAAATCTTCCAGAAGAGCAGCTCGCTGCTTCGGCATAAATATGAACACACAGGTAAACGTCCTCACGAATGCGGGATCTGCAGCAAAGCTTTCAAACACAAGCACCACCTGATCGAGCACCTGCGTCTGCACTCGGGAGAAAAGCCGTACCAGTGTGACAAGTGCGGCAAGCGCTTCTCTCACTCCGGCTCCTACTCGCAGCACATGAACCACCGCTACTCATACTGTAAGAAGGAGGCACACGGCCAGAACCAGGTGCAGAGGGACGAAGAGGAGGAGAACCCCAACGAAGAGCAGCCTGGAGCAGCAAGCACCGCCGCCTCGCCCCCATCTCAGGTGGACTCGGATGAACGAGGGAGCAGCGCCAGGGAGGACGAGGAGAGCGAGGAGGAAGACGCGATGGGCTCGGGGAGCGTGGTGGACGAGGACGAAATTCAGGTGGTCAGGATCGGTGAGGAAGGAGGAGAGGATGAGGAAGACACCGGAGAGCAGTACAGGATGGAGGAGATGGACACAGGAAATGAGGAGGCGGTTAGGGAGAATGGAGGACATGAGGAGGGTACAGTGGAAAGTCaagaagagggagaagaagatggagagatgatgaAGGTCGTGGTGATGCaggatgatgaggaagatgaagagcagacagaaaacacagaagtgATGGACATGCAGGAAaacacaggagagaaaaaaaacgagAATGAAGGAGAAAATGTGAAGGAGGAGGGTGGAAATGAAGGAAACACACCCAGTGAAAATGGAGATGTGAAATGAAGAGAAACCACATCAGGGCTTTTCTCGCTCTTATTCTTTGCTACTTAGTTTTACAAAAACGTTACTAATTTGAACAAAGACTGCAGATGTGGCTGCTTCAAGAGGATTGCAGGAAATGgtgaaagaaggaaggaagagagcGAGAGCACAGGAGCTCTGCCATTGCATTTTATCCCACTACTGTGTATAAAACCCTTTGTGtgcctgattaaaaaaaactagtgTTTTTTCCACATAAGGACAATTTTCAGTGTTTATGGTTTGTATAAATACAaagtttaatgaaaaaaatgacacatatACAGACTGAAATCTAGACACGTTTTAGCTAATAACGTTTTATTACTAAAACACCGTGGGTTTCTTTTTATCAGTgttactaattttttttgtcactctTGTTTAAACCTTAAAAAAGCTGTACAGTTGGGAGAgatttctatacatttttattgcCAATGAACAAAACTCAGTATTTTATTGcatatgaaggaaaaaaaaaagatcctgtGCACTACCATGCTCCCAGTTTACTGATGAACACCTCTGTGGGCCTTGTTTAATGTCTACCTTTCAGTATTAATACTCTCGAGCTAACCCACGTGTCATGCTAGCCTACGCTAGCTCAAcatctgtctgttttgtttggAAATGGTCTGTGAGCCTTAAACGTAAGAAAAAAATGGGGGTGGTACACAATCCtagatccaaaaaaaaaaaaaa
>XM_026914942.2
TGCGGGAAGTTGTGGAAGCTTGAGTAAGGGCGTGTCTAAGCCATACATCGTCCATGAAGCATCTCTGCAGCGCCGTTAGCGTGGAAGccgtgagagtgagtgagtgcgtgaGGAACCTGTCTGAGGGCTGTACGTGTACGTGTGTGGCTCTGGGTGGTAACtggaaggagaaaaggaaaggaatcTGCGGGGCTGCACAACAACTGCAGCTCAGCCTATATAAGGAATGCGCCGTGTATACATGCTGAGGAGAGAGTGCTGAGGGTCAGGCTGGCTGCGGGACAGGAGAGGACAGGAGTGGAGAGGACAGGAGAagacaggagaggagaagacaggagaggagaggacaggacATTACACCGGGACTCGACCACTGCTCAGCTCCTCACCTACTGCACGCGCTCGGTCATCATCTGCGTCTTGTTCTCACCAttcctgctgtttttattgttattattattctaatttAATCTAATAACGACTTTGCGACTTATTTccgattttattatattactctGCATTTATGAGATTCCTGATCTGCATCCAGGCGTCTTTATGTaggagtttgtttgtttgtaggttggtttgtttgtttgtttttcttttctgagaGCACACATGAGTTGCTTTGCTTTTATCTAAGCTctatgtatgtgtttatgctTCTGATACAAATCTGAAAACTTGTCGCTACTACTTGATTTATCTTTAGACTTTGTCTTTCAGATAGAAAGCCCGAGGTCctgcgcctgtgtgtgtgccactTCAGAAatagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggttccGTTTCCGCCATGCGCTCCCTGGCGGTGCTGTCCGCGCGCAGCTTTCTTTCAACTGATCCGAGGCATAAAGCCATCGCTCAGGGTTTATCAATGGGAAAACATAGACgtcctgtatttttttcagtgctgtGCATCTGATTGGTTTTCGCTCCAACTCAAGGACGCAGACGAAAATCGTTTCCATCCGTTTTGCAAGGTGTTGGAAGGCAAGGCGTTGCACCAAATGTCAACTTGTGCAGtgaGTAACTACAGCCATGTACTGGAAGGCCAGTCAGACTCTGATGATGAAGATAAGCTCCATATCGTGGAGGAAGACGGGACCCCTGTGGATGGAGCTGATGGTGACAGCGTTGCCCACGACGATGATGCCAATGGCCCTGAGGACCGATGGGATGAAGtgaaagaggagtgtgtgtcagaggagGATGAGAGGAGTAGGGATGCTCTTGTTGAGGAAATGCTTCAGCAGGGAGACACGGCCGTCATCTTCCCGGAGGCACCGGAAGACGAACCACGCCAGGGAACACCGGAGACCAGTGGCCATGATGAgaatggcACACCAGACGCGTTTTCTCAGCTCCTCACCTGTCCCTACTGCTCTCGCGGCTACAAGCGCTACACGTCTCTGAAGGAGCACATAAAGTATAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCACTTTGCAGCTACACTTTCTCCCACCGCACACAGCTCGACCGACACATGAGCGCACACAAAGCAGGCAGAGACCAGCGGCATGTAACCCAAACAGGGGGTGGAGGAAACCGTAAGTTTAAGTGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGTATCCACAGTGGGGAGAAGCCATACGAGTGCCCCAACTGTAAAAAGCGTTTCTCTCACTCTGGCTCCTACAGTTCCCATATCAGCAGTAAGAAATGCATCGGCCTCATTTCCGTCAACGGCCGGCCACGACCCTCGCCAGCCACAGGAGGCACCAAAACCCCTCAGTGTCCTTCACCATCCCTGCCCTCCTCCCCCGCCACTGCCCGGACTCAGATCCAGGACAAACTGGACCATAGTAAACCCCTGCAGGAGCAGCTCCCGATCACACAGATTAAGTCTGAGCCATTGGACTATGAGTACAAGCCTGTGGTAGTTGCCCCGGCTGCCCCTGGAGGAGTAAACGGGGTTTTCCAAGGAGGGGCAGCAGCACCACTACAGGGGGCAGTGCAGGCTGTGGTCCTCCCCACTGTAGGACTGGTCTCCCCAATCAGCATTAATCTAGGGGATTTGCAGAACATGCTAAAGGTGGCAGTGGATGGGAATGTGATCAGGCAGGTGTTGGAGAATGCCCAGACCAAAGGCCAGCCTGCAAGCACCGGCAGAGTGGCTATTGCACAGGCTCCTCAGCAAGTCATCCAAGCCATCAGTCTTCCCATTGTTGACCAGGACGGTACCGCCAAGATCATAATCAACTATAGCCTTGACCCATCGCAGACTCAGGTAGCTCTGCAGAACTTGAAGAAAGAGCCAGTGGGGCAGAATACAGACTCCTGCAAGGCTGAACGACTACCTGAGGACCTGACGGTTAAAAGCAAGACAACCAGGGACAAAACCACCATCACTGTGGATGAAGAATGGCAGCAGGAGAAGGGCAAACTCTACAATCACACGACAAACAAACACTGtggcaaggaggaacaggaggttAACggaacacacttggaggaaaagCCTGAAGCAGATGTTGAACTGTGTCCTGGGCAGCCCCCACTGAAGAACCTTATGTCCTTGCTTAAGGCTTACTTTGCCTTAAACGCAGAACCTACCAAGGAGGAGCTGGCAAAGATATCCGAGTCAGTCAATCTCCCTACTGATATTGTCAGGAAGTGGTTTGAGAAGATGCAGAATGGGCAGATTCCAATGGAGGTCTCTACAGCCACACCCCAGACTAACGGGATAGACATTAATGGCActccggaggaaacccccaatcCGATGTCAGAGCAGGACAGCAAAAGGAAccaagaggaggaggaggagatggagctTCATAGCCCAGCAGAAGGCACTACAGCTGGGATAAGTGGAACAGAAAATGGCCCCACATCCCCTTTACCACTAAATCTATCTGCAGATGGGCCTGTGCCAGCCCAGACTGCGGAGGAAGGAGAGGGACCGCTTGATTTGTCTCTCCCAAAATCTGTAGCGGCAACAAATACAACCAGCGCTCACTCTGTTTACTCAGCTCAGGACGAGCCTCTGAACTTGGTTTGCACAAAGAAGGAAGTGCTCAGCAATGCAAGCACCAGCACTGCCATCTATGCCAGCCAAACAAGTGCCAATTCCCTGAACATTGTGACCACTCAACTGCCCACCCTCGTGGCTATCGCCAAGCAAGGCCCCGGGCAGTGCCTGCGCACCCTCACCACCACTAAACAGACCATCTTAATCCCACAGCTGGCCTACACCTACACCACTACAGCCTCCAGCCCAGCAGGGGGTGACACACCACAGAAGGCCATACTGCATGTCAATGGCGTCAAGGAGGAGAAGCAGGAGGCCGGTTCAGAGGTGGCTTCAGTGCTGGAGGAGCAGACAGACTCAGACTCTGGGCCGGtgaggaagaagatgaagaagactGAAAATGGCTTGTATGCCTGTGACCTGTGTGACAAAATCTTCCAGAAGAGCAGCTCGCTGCTTCGGCATAAATATGAACACACAGGTAAACGTCCTCACGAATGCGGGATCTGCAGCAAAGCTTTCAAACACAAGCACCACCTGATCGAGCACCTGCGTCTGCACTCGGGAGAAAAGCCGTACCAGTGTGACAAGTGCGGCAAGCGCTTCTCTCACTCCGGCTCCTACTCGCAGCACATGAACCACCGCTACTCATACTGTAAGAAGGAGGCACACGGCCAGAACCAGGTGCAGAGGGACGAAGAGGAGGAGAACCCCAACGAAGAGCAGCCTGGAGCAGCAAGCACCGCCGCCTCGCCCCCATCTCAGGTGGACTCGGATGAACGAGGGAGCAGCGCCAGGGAGGACGAGGAGAGCGAGGAGGAAGACGCGATGGGCTCGGGGAGCGTGGTGGACGAGGACGAAATTCAGGTGGTCAGGATCGGTGAGGAAGGAGGAGAGGATGAGGAAGACACCGGAGAGCAGTACAGGATGGAGGAGATGGACACAGGAAATGAGGAGGCGGTTAGGGAGAATGGAGGACATGAGGAGGGTACAGTGGAAAGTCaagaagagggagaagaagatggagagatgatgaAGGTCGTGGTGATGCaggatgatgaggaagatgaagagcagacagaaaacacagaagtgATGGACATGCAGGAAaacacaggagagaaaaaaaacgagAATGAAGGAGAAAATGTGAAGGAGGAGGGTGGAAATGAAGGAAACACACCCAGTGAAAATGGAGATGTGAAATGAAGAGAAACCACATCAGGGCTTTTCTCGCTCTTATTCTTTGCTACTTAGTTTTACAAAAACGTTACTAATTTGAACAAAGACTGCAGATGTGGCTGCTTCAAGAGGATTGCAGGAAATGgtgaaagaaggaaggaagagagcGAGAGCACAGGAGCTCTGCCATTGCATTTTATCCCACTACTGTGTATAAAACCCTTTGTGtgcctgattaaaaaaaactagtgTTTTTTCCACATAAGGACAATTTTCAGTGTTTATGGTTTGTATAAATACAaagtttaatgaaaaaaatgacacatatACAGACTGAAATCTAGACACGTTTTAGCTAATAACGTTTTATTACTAAAACACCGTGGGTTTCTTTTTATCAGTgttactaattttttttgtcactctTGTTTAAACCTTAAAAAAGCTGTACAGTTGGGAGAgatttctatacatttttattgcCAATGAACAAAACTCAGTATTTTATTGcatatgaaggaaaaaaaaaagatcctgtGCACTACCATGCTCCCAGTTTACTGATGAACACCTCTGTGGGCCTTGTTTAATGTCTACCTTTCAGTATTAATACTCTCGAGCTAACCCACGTGTCATGCTAGCCTACGCTAGCTCAAcatctgtctgttttgtttggAAATGGTCTGTGAGCCTTAAACGTAAGAAAAAAATGGGGGTGGTACACAATCCtagatccaaaaaaaaaaaaaa

Function

symbol description
zeb1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Involved in negative regulation of endothelial cell differentiation and negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in Fuchs' endothelial dystrophy and posterior polymorphous corneal dystrophy 3.

NR:

description
PREDICTED: zinc finger E-box-binding homeobox 1

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09299 ZEB1; zinc finger homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914941.2 False 4102 mRNA 0.51 8 15695763 15755399
XM_026914942.2 True 5019 mRNA 0.50 8 15696775 15755399

Neighbor

gene id symbol gene type direction distance location
LOC113527272 NA coding upstream 80893 15605292 ~ 15614870 (+)
svila svil coding upstream 91267 15527593 ~ 15604496 (+)
jcada kiaa1462 coding upstream 180719 15482305 ~ 15515044 (+)
mtpap mtpap coding upstream 226609 15457999 ~ 15469154 (+)
bambia bambi,LOC108274338,LOC107749375,LOC107584374,LOC107676764,LOC107549411 coding upstream 338077 15354169 ~ 15357686 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding downstream 1015838 16771237 ~ 16777328 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding downstream 1022890 16778289 ~ 16783706 (+)
ddit4 ddit4 coding downstream 1110811 16866210 ~ 16868429 (+)
narf narf,LOC107581643 coding downstream 1134965 16890364 ~ 16899730 (+)
slc9a3r1a slc9a3r1 coding downstream 1145994 16901393 ~ 16923228 (+)
G197174 NA non-coding upstream 427023 15267299 ~ 15268740 (+)
G196387 NA non-coding upstream 1081106 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 1094324 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 1117305 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 1169680 14523905 ~ 14526083 (+)
G197434 NA non-coding downstream 98535 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 290904 16046303 ~ 16046505 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding downstream 294197 16049596 ~ 16049892 (+)
G197659 LOC108191637,LOC106904820 non-coding downstream 743036 16498435 ~ 16498661 (+)
G197660 NA non-coding downstream 743315 16498714 ~ 16498945 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 1371482 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 1661620 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 2136678 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 2673768 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 3221780 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 1100290 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 1790394 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 2399746 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 2686487 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 3050678 18806077 ~ 18812262 (+)

Expression


Co-expression Network