Gene
RNA
| Item | Value |
|---|---|
| gene id | tcf7l2 |
| gene name | tcf7l2 |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 13483301 ~ 13559085 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| tcf7l2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in digestive system development. Acts upstream of or within several processes, including diencephalon development; exocrine pancreas development; and intestinal epithelial structure maintenance. Located in nucleus. Is expressed in several structures, including anterior neural plate; brain; digestive system; gonad; and sensory system. Used to study type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in colorectal cancer; diabetes mellitus (multiple); pancreatic cancer; and prostate cancer. Orthologous to human TCF7L2 (transcription factor 7 like 2). |
| description |
|---|
| PREDICTED: transcription factor 7-like 2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0060729 | intestinal epithelial structure maintenance | biological_process |
| GO:0044333 | Wnt signaling pathway involved in digestive tract morphogenesis | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0048699 | generation of neurons | biological_process |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| id | description |
|---|---|
| K04491 | TCF7L2; transcription factor 7-like 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026914944.2 | False | 2571 | mRNA | 0.50 | 14 | 13483303 | 13559085 |
| XM_026914946.2 | False | 2556 | mRNA | 0.50 | 14 | 13483303 | 13559085 |
| XM_026914947.2 | False | 2520 | mRNA | 0.50 | 13 | 13483303 | 13559085 |
| XM_026914948.2 | False | 2521 | mRNA | 0.51 | 13 | 13483302 | 13559085 |
| XM_026914950.2 | False | 2505 | mRNA | 0.50 | 13 | 13483303 | 13559085 |
| XM_026914951.2 | False | 2505 | mRNA | 0.51 | 13 | 13483303 | 13559085 |
| XM_026914956.2 | False | 1941 | mRNA | 0.52 | 12 | 13483303 | 13558579 |
| XM_026914957.2 | False | 1926 | mRNA | 0.52 | 12 | 13483303 | 13558579 |
| XM_026914959.2 | False | 1978 | mRNA | 0.51 | 13 | 13483302 | 13558579 |
| XM_034309311.1 | False | 2587 | mRNA | 0.50 | 14 | 13483302 | 13559085 |
| XM_034309312.1 | False | 2587 | mRNA | 0.50 | 14 | 13483302 | 13559085 |
| XM_034309313.1 | False | 2572 | mRNA | 0.50 | 14 | 13483302 | 13559085 |
| XM_034309314.1 | False | 2536 | mRNA | 0.50 | 13 | 13483302 | 13559085 |
| XM_034309315.1 | False | 2536 | mRNA | 0.51 | 13 | 13483302 | 13559085 |
| XM_034309316.1 | False | 1974 | mRNA | 0.51 | 11 | 13540054 | 13559085 |
| XM_034309317.1 | True | 4375 | mRNA | 0.48 | 14 | 13483301 | 13558505 |
| XM_034309318.1 | False | 2018 | mRNA | 0.51 | 15 | 13483301 | 13558490 |
| XM_034309319.1 | False | 1957 | mRNA | 0.52 | 12 | 13483302 | 13558579 |
| XR_004579175.1 | False | 2542 | misc_RNA | 0.50 | 14 | 13483301 | 13558429 |
| XR_004579176.1 | False | 2089 | misc_RNA | 0.52 | 15 | 13483301 | 13558513 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| vti1a | vti1a,LOC107702459,LOC107566351 | coding | upstream | 21257 | 13355852 ~ 13462044 (+) |
| acsl5 | acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 | coding | upstream | 132826 | 13341575 ~ 13350475 (+) |
| tectb | tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 | coding | upstream | 152231 | 13327700 ~ 13331070 (+) |
| nrap | nrap,LOC107755535 | coding | upstream | 263885 | 13204326 ~ 13219416 (+) |
| si:ch211-28p3.4 | LOC108273726,LOC103041412,LOC108426492 | coding | upstream | 288171 | 13193024 ~ 13195130 (+) |
| crygmx | LOC108273487 | coding | downstream | 55114 | 13614199 ~ 13617164 (+) |
| entpd1 | entpd1 | coding | downstream | 81092 | 13640177 ~ 13655847 (+) |
| psme4b | psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 | coding | downstream | 177363 | 13736448 ~ 13758533 (+) |
| mrpl43 | mrpl43,LOC107722220,LOC107565786,LOC107581592 | coding | downstream | 236008 | 13795093 ~ 13797650 (+) |
| mfsd13a | mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271 | coding | downstream | 267022 | 13826107 ~ 13836370 (+) |
| G195839 | NA | non-coding | upstream | 16318 | 13466765 ~ 13466983 (+) |
| LOC113527319 | NA | non-coding | upstream | 416679 | 13063864 ~ 13066622 (+) |
| G195512 | NA | non-coding | upstream | 638740 | 12844325 ~ 12844561 (+) |
| G195301 | NA | non-coding | upstream | 824978 | 12658105 ~ 12658323 (+) |
| G195287 | NA | non-coding | upstream | 839775 | 12643268 ~ 12643526 (+) |
| G195857 | NA | non-coding | downstream | 59579 | 13618664 ~ 13618939 (+) |
| G195994 | NA | non-coding | downstream | 134630 | 13693715 ~ 13695761 (+) |
| G196202 | NA | non-coding | downstream | 464502 | 14023587 ~ 14043932 (+) |
| G196265 | NA | non-coding | downstream | 567433 | 14126518 ~ 14127031 (+) |
| G196289 | NA | non-coding | downstream | 604486 | 14163571 ~ 14166015 (+) |
| ablim1b | ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 | other | upstream | 461306 | 12958935 ~ 13021995 (+) |
| LOC113527673 | LOC108273669,LOC108273679 | other | upstream | 1009318 | 12472679 ~ 12473983 (+) |
| LOC113527436 | uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 | other | upstream | 1397942 | 12062808 ~ 12085359 (+) |
| tmem106a | tmem106a | other | upstream | 1862032 | 11613899 ~ 11621269 (+) |
| trnaq-cug_16 | NA | other | upstream | 2197033 | 11286197 ~ 11286268 (+) |
| tha1 | LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 | other | downstream | 454488 | 14013573 ~ 14034143 (+) |
| qki2 | qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 | other | downstream | 728274 | 14287359 ~ 14324281 (+) |
| anapc16 | anapc16,cj104 | other | downstream | 3296604 | 16855689 ~ 16863495 (+) |
| mta3 | LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 | other | downstream | 3986708 | 17545793 ~ 17572065 (+) |
| pde6gb | pde6g,LOC102781464,LOC103367935,LOC102221623 | other | downstream | 4596060 | 18155145 ~ 18160086 (+) |
