LOC113527303 (LOC108274029,LOC108424886)


Basic Information

Item Value
gene id LOC113527303
gene name LOC108274029,LOC108424886
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9643040 ~ 9653007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914961.2
GGTGTGTTCATGGTGCCTTGTTTGGGAGTGGCATCTCATCATGCCTTGTGTTCTCAGGAGCAGCTCCAGATCCCACCGCAACCCTGAGAAGATAAATTGGTTACTGAAAACGAGAGAGTGTGAAACCACAGATTACAgcaatatatatttaatcttAAGAAACAGGCACAAgagcaatccaaaacaaaagcaagTAGCTCATCCTCCATGGAGATTGTTACCGAGTTACCGGGCTGTGGGTCGCGGCTGATGGCGGCTCCTGCGCGGAGCGATCATGTAGCGCTGCTGCTGGGAAATGTGCTCCACGTCTGGGGCGGTGTACAGTATGTGGATGGAGAAGAAGTTGTGCTCCCCAGTGATGAGATCTGGCTCTACGATCTGGAAAGTGGAGTCTGGGCTCGCATGGTTATGGGTGGAGAGTTGCCTCCTCTGCTTTCTCAGACTTGTGGCTCAATTCTCAGTGGTATACTTTATGTTTTTGGAGGCAGAGACAGCGATGACTACACCAACCAGATGTATTGTGTAGACTTGCAAGATGGAAAATACACCTGGAGGAAATTGAGTACCTGTGTGGGAACCCCTCCCTCACCCAGAGACAGACACTCCTGCTGGGTCTACAAGGACAGGTGGTGCAAGGGCTCCAGGCTCATCTATTTTGGTGGATATGGATGGAAAACAGTTCGAGAGATCAACAACTACAAAAGTTTCACAGTGGATGAGACATCATGGGTGACGAATGGCCGTGTGTTTTTCCGCTTTTGGGGTTGGAATAATGAGGTTCATATCTTCGAACCCGACTCAGCCACATGGACTGAACCCCAAACCCAGGGCCGGCCACCTGAACCAAGGGCTTCCCATGCTAGTGCCACTCTTGGCACCAAGGGCTACATCTGTGGTGGTTTGGAAACACAGACTATAGACATCCACTGTTTAGACCTGGTCACGTGGACGTGGACACAAATTGAGCCTTTGGCCCCTCCCCTCCCGATGGGCCGctctctgcacacactcacccccacCTCACACAACACGCTGTTCCTCTTCGGTGGCCTAAGCATATGTGGGCAGGTTCTTTGTGATGGCTGGGAATTTAACACTGTAACaagagaatggagagagaggCCGCATCCTCACAAAGATAAACCCAGGTTGTGGCACTCAGCAGTACAGGGGAAGGACAACGATGTGGTGGTTTATGGAGGAAGCCGAGACTACATCTTAGTCATGGATTCgGTTACAGTGCTCAGATCTCCTTCACAGAGTCACTGTGGAGATGTGCTGGTGTTTCAGAGCCAACCTTATTCACTCACCCGATTATGTGAGGACTGCATAGGCAAACATGGATCTGTTTTACGGGAGAAGGCGTCGTCTTTACCACCCAGAGTTCGGGAGACCCTTCACAAGAGGATGTCTTACTTCAGGAGCATGCAGGAGCAGAGTGGTTATACATGAGCTCATGGACAAGCTTATTACATTGGCTCCATCATGTGAGCATTTCTGCTCCACTAACATTCCTTTGTTTCAGAAGGACTTGAacatatatttattgatttactggcaatttttgttaaacaacaggCTATTAgatattaatattgtatattcTTATTAGAAGTGCCTTCAAAaacttataattattattgaaatGTAGAGATGTGGATTAATTTAAACTACtgaatctttaaatatttttgttcagaTTTTTATAAGGATATAGATTCTTTATGCTTTTTAATCAGAAAACTTGATGGGGTTGATTTATACAACATAATTTGAACATTAAcactaatttaaataaaaaaagtatataaacaAATCAATGGGTATAAAGTTCTACATGTGAAGAGCCAACCAGAATATAGAAAGGGTGGTTTGGATTGGAAAGGATTTTTAGCATCCTAAAGGGGTTTCTTTTTGGAACCTTCTTCTGTTACAGGGTTCTAACAGACAAACTTTAAAGGATACTTTCAGAGGAATAGACATTTTAGGGCTCGATATTGATTATTTTAGTGTACTCTAGAACTCTAGAAAGCATACACACCTTCTTTAACTGGTTTAATCATAAGTTTATTATTGAATATATTCATGAATTGGAATGCTTTCTTACAAAATAACAATGGAATGATATGTCACATTTATGCCAATATATACTAATAAAACCTGGAGTTTTCTTCTTTCCTGA
>XM_026914962.2
CAGTTTTAGATTtactttacagtatttacattcCATGGGAGCACAGGAGCCTCAAGGAAGGAAAAGGAGTTTCCCAtccagtgtgtttatttctttactcAGACGTAGCTCATCCTCCATGGAGATTGTTACCGAGTTACCGGGCTGTGGGTCGCGGCTGATGGCGGCTCCTGCGCGGAGCGATCATGTAGCGCTGCTGCTGGGAAATGTGCTCCACGTCTGGGGCGGTGTACAGTATGTGGATGGAGAAGAAGTTGTGCTCCCCAGTGATGAGATCTGGCTCTACGATCTGGAAAGTGGAGTCTGGGCTCGCATGGTTATGGGTGGAGAGTTGCCTCCTCTGCTTTCTCAGACTTGTGGCTCAATTCTCAGTGGTATACTTTATGTTTTTGGAGGCAGAGACAGCGATGACTACACCAACCAGATGTATTGTGTAGACTTGCAAGATGGAAAATACACCTGGAGGAAATTGAGTACCTGTGTGGGAACCCCTCCCTCACCCAGAGACAGACACTCCTGCTGGGTCTACAAGGACAGGCTCATCTATTTTGGTGGATATGGATGGAAAACAGTTCGAGAGATCAACAACTACAAAAGTTTCACAGTGGATGAGACATCATGGGTGACGAATGGCCGTGTGTTTTTCCGCTTTTGGGGTTGGAATAATGAGGTTCATATCTTCGAACCCGACTCAGCCACATGGACTGAACCCCAAACCCAGGGCCGGCCACCTGAACCAAGGGCTTCCCATGCTAGTGCCACTCTTGGCACCAAGGGCTACATCTGTGGTGGTTTGGAAACACAGACTATAGACATCCACTGTTTAGACCTGGTCACGTGGACGTGGACACAAATTGAGCCTTTGGCCCCTCCCCTCCCGATGGGCCGctctctgcacacactcacccccacCTCACACAACACGCTGTTCCTCTTCGGTGGCCTAAGCATATGTGGGCAGGTTCTTTGTGATGGCTGGGAATTTAACACTGTAACaagagaatggagagagaggCCGCATCCTCACAAAGATAAACCCAGGTTGTGGCACTCAGCAGTACAGGGGAAGGACAACGATGTGGTGGTTTATGGAGGAAGCCGAGACTACATCTTAGTCATGGATTCgGTTACAGTGCTCAGATCTCCTTCACAGAGTCACTGTGGAGATGTGCTGGTGTTTCAGAGCCAACCTTATTCACTCACCCGATTATGTGAGGACTGCATAGGCAAACATGGATCTGTTTTACGGGAGAAGGCGTCGTCTTTACCACCCAGAGTTCGGGAGACCCTTCACAAGAGGATGTCTTACTTCAGGAGCATGCAGGAGCAGAGTGGTTATACATGAGCTCATGGACAAGCTTATTACATTGGCTCCATCATGTGAGCATTTCTGCTCCACTAACATTCCTTTGTTTCAGAAGGACTTGAacatatatttattgatttactggcaatttttgttaaacaacaggCTATTAgatattaatattgtatattcTTATTAGAAGTGCCTTCAAAaacttataattattattgaaatGTAGAGATGTGGATTAATTTAAACTACtgaatctttaaatatttttgttcagaTTTTTATAAGGATATAGATTCTTTATGCTTTTTAATCAGAAAACTTGATGGGGTTGATTTATACAACATAATTTGAACATTAAcactaatttaaataaaaaaagtatataaacaAATCAATGGGTATAAAGTTCTACATGTGAAGAGCCAACCAGAATATAGAAAGGGTGGTTTGGATTGGAAAGGATTTTTAGCATCCTAAAGGGGTTTCTTTTTGGAACCTTCTTCTGTTACAGGGTTCTAACAGACAAACTTTAAAGGATACTTTCAGAGGAATAGACATTTTAGGGCTCGATATTGATTATTTTAGTGTACTCTAGAACTCTAGAAAGCATACACACCTTCTTTAACTGGTTTAATCATAAGTTTATTATTGAATATATTCATGAATTGGAATGCTTTCTTACAAAATAACAATGGAATGATATGTCACATTTATGCCAATATATACTAATAAAACCTGGAGTTTTCTTCTTTCCTGA
>XM_034309284.1
CAGTTTTAGATTtactttacagtatttacattcCATGGGAGCACAGGAGCCTCAAGGAAGGAAAAGGAGTTTCCCAtccagtgtgtttatttctttactcAGACGTAGCTCATCCTCCATGGAGATTGTTACCGAGTTACCGGGCTGTGGGTCGCGGCTGATGGCGGCTCCTGCGCGGAGCGATCATGTAGCGCTGCTGCTGGGAAATGTGCTCCACGTCTGGGGCGGTGTACAGTATGTGGATGGAGAAGAAGTTGTGCTCCCCAGTGATGAGATCTGGCTCTACGATCTGGAAAGTGGAGTCTGGGCTCGCATGGTTATGGGTGGAGAGTTGCCTCCTCTGCTTTCTCAGACTTGTGGCTCAATTCTCAGTGGTATACTTTATGTTTTTGGAGGCAGAGACAGCGATGACTACACCAACCAGATGTATTGTGTAGACTTGCAAGATGGAAAATACACCTGGAGGAAATTGAGTACCTGTGTGGGAACCCCTCCCTCACCCAGAGACAGACACTCCTGCTGGGTCTACAAGGACAGGTGGTGCAAGGGCTCCAGGCTCATCTATTTTGGTGGATATGGATGGAAAACAGTTCGAGAGATCAACAACTACAAAAGTTTCACAGTGGATGAGACATCATGGGTGACGAATGGCCGTGTGTTTTTCCGCTTTTGGGGTTGGAATAATGAGGTTCATATCTTCGAACCCGACTCAGCCACATGGACTGAACCCCAAACCCAGGGCCGGCCACCTGAACCAAGGGCTTCCCATGCTAGTGCCACTCTTGGCACCAAGGGCTACATCTGTGGTGGTTTGGAAACACAGACTATAGACATCCACTGTTTAGACCTGGTCACGTGGACGTGGACACAAATTGAGCCTTTGGCCCCTCCCCTCCCGATGGGCCGctctctgcacacactcacccccacCTCACACAACACGCTGTTCCTCTTCGGTGGCCTAAGCATATGTGGGCAGGTTCTTTGTGATGGCTGGGAATTTAACACTGTAACaagagaatggagagagaggCCGCATCCTCACAAAGATAAACCCAGGTTGTGGCACTCAGCAGTACAGGGGAAGGACAACGATGTGGTGGTTTATGGAGGAAGCCGAGACTACATCTTAGTCATGGATTCgGTTACAGTGCTCAGATCTCCTTCACAGAGTCACTGTGGAGATGTGCTGGTGTTTCAGAGCCAACCTTATTCACTCACCCGATTATGTGAGGACTGCATAGGCAAACATGGATCTGTTTTACGGGAGAAGGCGTCGTCTTTACCACCCAGAGTTCGGGAGACCCTTCACAAGAGGATGTCTTACTTCAGGAGCATGCAGGAGCAGAGTGGTTATACATGAGCTCATGGACAAGCTTATTACATTGGCTCCATCATGTGAGCATTTCTGCTCCACTAACATTCCTTTGTTTCAGAAGGACTTGAacatatatttattgatttactggcaatttttgttaaacaacaggCTATTAgatattaatattgtatattcTTATTAGAAGTGCCTTCAAAaacttataattattattgaaatGTAGAGATGTGGATTAATTTAAACTACtgaatctttaaatatttttgttcagaTTTTTATAAGGATATAGATTCTTTATGCTTTTTAATCAGAAAACTTGATGGGGTTGATTTATACAACATAATTTGAACATTAAcactaatttaaataaaaaaagtatataaacaAATCAATGGGTATAAAGTTCTACATGTGAAGAGCCAACCAGAATATAGAAAGGGTGGTTTGGATTGGAAAGGATTTTTAGCATCCTAAAGGGGTTTCTTTTTGGAACCTTCTTCTGTTACAGGGTTCTAACAGACAAACTTTAAAGGATACTTTCAGAGGAATAGACATTTTAGGGCTCGATATTGATTATTTTAGTGTACTCTAGAACTCTAGAAAGCATACACACCTTCTTTAACTGGTTTAATCATAAGTTTATTATTGAATATATTCATGAATTGGAATGCTTTCTTACAAAATAACAATGGAATGATATGTCACATTTATGCCAATATATACTAATAAAACCTGGAGTTTTCTTCTTTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914961.2 True 2182 mRNA 0.43 14 9643040 9653007
XM_026914962.2 False 2075 mRNA 0.43 14 9643040 9652578
XM_034309284.1 False 2093 mRNA 0.43 14 9643040 9652578

Neighbor

gene id symbol gene type direction distance location
trnac-gca_15 NA coding downstream 14553 9628416 ~ 9628487 (-)
LOC113527284 LOC108424836 coding downstream 46637 9594786 ~ 9596403 (-)
si:ch1073-357b18.4 LOC108273401 coding downstream 122228 9517209 ~ 9520812 (-)
wdr45b wdr45b,LOC107598578 coding downstream 133747 9500260 ~ 9509293 (-)
foxk2 foxk2,LOC107719587 coding downstream 143860 9481550 ~ 9499180 (-)
hexim1 LOC108273817 coding upstream 38773 9691780 ~ 9695274 (-)
acbd4 acbd4,LOC107662569 coding upstream 42959 9695966 ~ 9705363 (-)
kcnj19b si:dkey-100n10.2,LOC108273498,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC107727700,LOC107592353 coding upstream 172431 9825438 ~ 9838465 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 275315 9928322 ~ 9949802 (-)
rpp30 rpp30 coding upstream 356637 10009644 ~ 10014434 (-)
G193476 NA non-coding downstream 106428 9535459 ~ 9536612 (-)
G193474 NA non-coding downstream 109016 9533729 ~ 9534024 (-)
G193453 NA non-coding downstream 133101 9509733 ~ 9509939 (-)
G193447 NA non-coding downstream 167056 9475084 ~ 9475984 (-)
G193433 NA non-coding downstream 234367 9408413 ~ 9408673 (-)
G193731 NA non-coding upstream 171065 9824072 ~ 9825207 (-)
LOC117598498 NA non-coding upstream 491080 10144087 ~ 10169389 (-)
G193940 pms2 non-coding upstream 633786 10286793 ~ 10288097 (-)
G193971 NA non-coding upstream 696092 10349099 ~ 10349540 (-)
G194041 NA non-coding upstream 835760 10488767 ~ 10489028 (-)
LOC113527760 LOC108273447,LOC108424882,LOC103023950,LOC100693129,LOC101473140,LOC103373902 other downstream 50491 9590561 ~ 9592549 (-)
trnal-aag_7 NA other downstream 52584 9590375 ~ 9590456 (-)
LOC113527759 LOC108273488 other downstream 52924 9587166 ~ 9590116 (-)
trnar-ucg_9 NA other downstream 126896 9516072 ~ 9516144 (-)
trnam-cau_28 NA other downstream 127155 9515814 ~ 9515885 (-)
pcgf5b pcgf5,LOC108410714,LOC107584148,LOC107753439,LOC107669177,LOC107594155 other upstream 316735 9969742 ~ 9990264 (-)
tom1l2 tom1l2,LOC108274196,LOC108432008,LOC107734205,LOC107731411,LOC107699872,LOC107594179 other upstream 919928 10572935 ~ 10586125 (-)
l3mbtl2 l3mbtl2 other upstream 1625160 11278167 ~ 11285972 (-)
G195173 prr15l other upstream 2730418 12383425 ~ 12387460 (-)
cd37 NA other upstream 2821068 12474075 ~ 12480176 (-)

Expression


Co-expression Network