glud1b (glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058)


Basic Information

Item Value
gene id glud1b
gene name glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17832805 ~ 17850858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914964.2
GGATGGCACGAGCGCTGTCATTTCAATACTGAATGAGGCTCACAGAGGAGCTCGTGCAGTCCTCGTTCACTTCCCCCTGTTTTCGTTTCCTTTGCAGGcctctttgtttattttaatctcttCTCTTCCATTTTAAACAACACCCGCTTTCCCTGGTCGAAATGTACCGGTATTTTGGCGAGCTTGTGAGCCGCGGAGCAGGCAGCGCTCTGGCGGCGGGGTGCGTGGAGGCAGCGATGCCGGCTTCAGCGTCTGTAATGCGGCTAAGGCACTACAGCGACGCCGCGGATAAAGAGGACGACCCCAACTTCTTCAGGATGGTGGAGGGCTTCTTTGACCGCGGCGCCGCCATAGTGGAGAACAAGCTGGTGGAGGACCTGAAGACGAGAGAGACACCCGAGCAGAAGAGACACCGAGTACGGGGGATCCTCAAGATCATCAAGCCGTGCAACCACGTCCTCAGCGTGTCTTTCCCCATCAAGAGAGACAACGGAGAGTGGGAGGTTATCGAGGGCTACCGGGCGCAGCACAGCCAGCACAGAACTCCCTGCAAAGGAGgTATCCGGTACAGCACAGATGTGTCTGTGGATGAAGTTAAAGCCTTGGCCTCGCTGATGACCTATAAATGTGCTGTTGTGGATGTGCCGTTTGGAGGTGCCAAAGCTGGAGTCAAAATCAACCCTAAAAATTTCTCTGACAATGAGTTGGAGAAAATCACAAGAAGATTCACCATTGAGCTTGCCAAAAAGGGATTCATTGGACCCGGTGTTGATGTCCCTGCCCCTGACATGAGCACTGGCGAGAGGGAGATGTCCTGGATTGCTGATACTTACGCTAACACTATTGCTCACACTGACATTAACGCTCATGCCTGCGTGACGGGGAAGCCCATCAGCCAGGGAGGAATCCACGGCAGAGTGTCAGCCACAGGGCGTGGAGTTTTCCACGGCATCGAGAACTTCATCAACGAGGCATCCTACATGAGCAAGCTCGGACTGACGCCAGGCTTCGCTGACAAGACCTTCATCATCCAGggTTTCGGAAATGTTGGCTTGCACTCTATGCGTTACCTCCACCGTTACGGTGCTAAATGCGTGGGTATTGCTGAGATTGACGGAAACATCTGGAATCCTAATGGCATCGACCCCAAGGAACTCGAGGACTACAAACTGCAACATGGCACTATTGTGGGCTTCCCTAATGCTCAGCCCTATGAGGGTAGCATCCTGGAGGCAGACTGTGACATCCTCATCCCTGCCGCTGGAGAGAAACAACTTACCCGGAAGAACGCTCCCAACATCAAGGCTAAGATCATTGCTGAGGGAGCTAACGGCCCCACCACACCCGATGCTGACAAGATCTTCTTGGAGAGGAACATCATGGTCATCCCGGACATGTACCTGAATGCCGGTGGTGTGACCGTCTCCTACTTCGAGTGGCTGAAGAACCTGAACCATGTCAGTTACGGGCGTCTGACCTTCAAGTACGAGAGGGACTCCAACTACCACCTGCTGATGTCTGTGCAGGAAAGTCTTGAGAGGAAGTTTGGAAAGCAAGGTGGTCCCATCCCTGTGGTTCCCACTGCAGAATTCCAGGCTCGTGTGGCAggTGCCTCTGAGAAGGACATTGTGCACTCTGGTCTTGCCTACACAATGGAGAGATCTGCAAGGCAAATTATGCGTACGGCCAACAAGTACAACCTGGGCTTGGACCTCAGGACAGCAGCTTACGTCAATGCCATTGAGAAGGTCTTCAAAGTGTACAATGAGGCTGGCCTGACCTTCACATAAATCCTCAATCTCCCCTCTACCAGCCACTCTATACCGGCCTTAGACCAACCCTGTGCCCCATACCACAGccttttgtcattttctgaGTTTACAATGACACCTATAGTATCCCCACattattaaagtaaatgaaatgaaatattaaattaccCCATTCATATTTTGCCAAGTTTTTCCATATAGTTTATCGTAATTATGCTGTAACATCTGTATACTACTGTTCTGTATGACATAGAAAGAAGCTGCTAATTATGTCATGGAGTACATCATGCTATGATGTTATTCAGTTCAAATATCTCAAATTACTGTTAGTTTTGTACTAATTTTGTCATTAACTAATGTTTGCAGTATTGGCAGTATTCATTCGCCAGCCCTCAAGATATATTtagattcatttattaatattgtttgtTGGCCCAAAGCTTGTGACTCCACATTGTAAGTATTGAAAGACAACACTAAAGATGCCTTTGACCTTAGAGCAGGAGTTTTATACTCGCAGGAATTCTGTCTTTATACCAGTGGTTCAACATTCATAAAATACCTCACATAGGAAAAATCCATCCAACACACTGGTCCTATTCAGCAATTTGTCTTGGAGACATtctaaatctaaaaatcttcaatttaaaatgtctgaataTTAAACCCAGTGAATTTGGTGACACTCTGGAAAAGTGCGCGTGTTCGTGTGTGCGtgtattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgagtgtAGCTCATGGGGGAACAAAACCATTCACAAAGCTCATCTACACCGTCATGTGGAAATTTGCTTTGGAAAAATTTGTAttgcttttctttgttgttgAGAATAAAGAAATTGAAACACG

Function

symbol description
glud1b Predicted to enable glutamate dehydrogenase (NAD+) activity. Predicted to be involved in glutamate catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including blastomere; digestive system; fin; mesoderm; and tail bud. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; hypoglycemia; and late onset Parkinson's disease. Orthologous to several human genes including GLUD1 (glutamate dehydrogenase 1).

NR:

description
PREDICTED: glutamate dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914964.2 True 2662 mRNA 0.48 13 17832805 17850858

Neighbor

gene id symbol gene type direction distance location
epas1a LOC108273968 coding upstream 10515 17796028 ~ 17822290 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding upstream 40176 17732760 ~ 17792629 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding upstream 120993 17708916 ~ 17711812 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding upstream 163568 17643020 ~ 17669237 (+)
trnai-uau_6 NA coding upstream 255429 17577283 ~ 17577376 (+)
mmrn2b LOC108273952 coding downstream 18004 17868862 ~ 17878282 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding downstream 258781 18109639 ~ 18120051 (+)
itln3 itln2 coding downstream 272299 18123157 ~ 18126303 (+)
gprc5c gprc5c coding downstream 277141 18127999 ~ 18136358 (+)
oxld1 NA coding downstream 299633 18150491 ~ 18153090 (+)
G198088 NA non-coding upstream 161860 17670180 ~ 17670945 (+)
G198091 NA non-coding upstream 256219 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 258572 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 263643 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 267774 17564599 ~ 17565031 (+)
G198158 NA non-coding downstream 12681 17863539 ~ 17912523 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 64568 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 83172 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 86674 17937532 ~ 17937771 (+)
G198213 NA non-coding downstream 134305 17985163 ~ 17985468 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 260740 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 969310 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3508524 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3798662 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4273720 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 304287 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 591028 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 955219 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1675784 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3606533 21457391 ~ 21500929 (+)

Expression


Co-expression Network