wbp2 (wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818)


Basic Information

Item Value
gene id wbp2
gene name wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19845510 ~ 19853750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914968.2
CCATGACGACACGCGGTGGGCGTTACGTGATCCGGAAGTGCAGGTGCACCgttacaaaacattttcaacTCCGGATTATTTGTCCGAGTTTCTGATCGCGCTGCAAGGATCTGTGTCGCACTATCTGTTGTGGATGTAAGAGAAAACAGTGGAGATAAAATGGCTTTAAACCAGAATCACTCGGAGGCAGGGGGagtcatcatcaacaacagtGAGAGTGTCTTGATGTCCTATGAGAATGTAGAGCTGACGTTCAGTGATGCAGACCGCTTGCCAGACCTGTTTAGGAAGAGCAGGAAAGGGAGTGTCTATCTCACACCATACAGGGTGATCTTTGTGACAAAGGGGAAAGAGGCTTTGCAGTCATTCATGATGCCGTTCTACCTGATGAAGGGCTGTGAGGTCAAACAACCTGTGCTCGGAGCCAACTACGTCAAGGGCACTGTCAGTGCTGAACCAGGAGGTGGTTGGGAGGGTTCTGCAACCTTCAAGCTGATCTTTGTCTCTGGTGGAGCTATTGAATTTGGACAGTACATGTTGCAGGTGGCTGCTCAGGCCTCCAGGGGGCAGCCCGTGACCCCTAATTTTAGCTGTCCATACATGGCTAACGGCGCGTACGCCTACCCACCTCCCCCTCCAGCTAATGGCATCTACTCCACTGGACCACCTCCCCCTGGTTATTCGTACCCTGCTCCTCCACCTCCAGGTGCATTCTATCCTAATCCTCCAGGTTTTGATGGCGCTGCAGCCTACGTTCCCCCTCCACCTTACTCCGCCTCACTGGCCCAAGCCCCTCTAGACCCTGACCTACCACGTACACCTGCAGcggAGGCTAAAGCAGCAGAGGCAGCAGCCAGTGCAAACACTGCTCCTCTTGCTCCTACTCACGTTTACCTGCCAGAGGACAAGCCACCACCTTACTCACCTCCTGAAGACAAGAAGAACCAGTAAATGTCACACCAGCAATCCCAAAGCCAGCCTTCAAACTCCTCTctcaagtctctctctctctctctctctttcacacacacacacacacacactccttctgagcagcatttcatttaattaactCTGCTATCCACACCAGGAGTCTATTCCAATGAGCAGTAAATTGTGGCAGTAttgaagaaagagaggaaaagcaaaaaaatgtcaTGAGTGAGAAGGAATTAAAGTTTTAGGGCTTATCAGGAGTCACAACAGTGATGACAGAGATTTCCTAACcttatattttgcatttgtaATGCATTGACGGCATATTGGACTTGATTTGTGAGTTTATTTTCTGGAGACGGCCTAGTTGGCCATGTTTCATAAGATACAGGGCCAGCACGTTTGGATTGTGATGAGAAATACTAATCATTGCTGTGTATTCGTTCAGGCATTATAATTTACAGCCTTCCCTGTATCTTGAATGTGTTCAACCTGAAGGCACCTTGGTGTACCTGTGGATCCGCTGTCCCTGTGCTACTCGTGTCTGTGTGGTTCTCTGGAGCATGACTCAAACTAACACTgcactttaccttttttttttgtcatgcatCAGTACAATCTGAGCAACATCTTGTCCACAAATACTTCTTGCTGTGAAACAGTTCTTACTTAATTTATTTGGATTATAAAATGTGTAACCATCCAAGCATGCTCTCAGCTCTGCTGTCTAACATAATGgacatattttattaaattaaacatgtaCCAGATTAAAGGTCTGGTTTA
>XM_026914969.2
TGCCATGACGACACGCGGTGGGCGTTACGTGATCCGGAAGTGCAGGTGCACCgttacaaaacattttcaacTCCGGATTATTTGTCCGAGTTTCTGATCGCGCTGCAAGGATCTGTGTCGCACTATCTGTTGTGGATGTAAGAGAAAACAGTGGAGATAAAATGGCTTTAAACCAGAATCACTCGGAGGCAGGGGGagtcatcatcaacaacagtGAGAGTGTCTTGATGTCCTATGAGAATGTAGAGCTGACGTTCAGTGATGCAGACCGCTTGCCAGACCTGTTTAGGAAGAGCAGGAAAGGGAGTGTCTATCTCACACCATACAGGGTGATCTTTGTGACAAAGGGGAAAGAGGCTTTGCAGTCATTCATGATGCCGTTCTACCTGATGAAGGGCTGTGAGGTCAAACAACCTGTGCTCGGAGCCAACTACGTCAAGGGCACTGTCAGTGCTGAACCAGGAGGTGGTTGGGAGGGTTCTGCAACCTTCAAGCTGATCTTTGTCTCTGGTGGAGCTATTGAATTTGGACAGTACATGTTGCAGGTGGCTGCTCAGGCCTCCAGGGGGCAGCCCGTGACCCCTAATTTTAGCTGTCCATACATGGCTAACGGCGCGTACGCCTACCCACCTCCCCCTCCAGCTAATGGCATCTACTCCACTGGACCACCTCCCCCTGGTTATTCGTACCCTGCTCCTCCACCTCCAGGTTTTGATGGCGCTGCAGCCTACGTTCCCCCTCCACCTTACTCCGCCTCACTGGCCCAAGCCCCTCTAGACCCTGACCTACCACGTACACCTGCAGcggAGGCTAAAGCAGCAGAGGCAGCAGCCAGTGCAAACACTGCTCCTCTTGCTCCTACTCACGTTTACCTGCCAGAGGACAAGCCACCACCTTACTCACCTCCTGAAGACAAGAAGAACCAGTAAATGTCACACCAGCAATCCCAAAGCCAGCCTTCAAACTCCTCTctcaagtctctctctctctctctctctttcacacacacacacacacacactccttctgagcagcatttcatttaattaactCTGCTATCCACACCAGGAGTCTATTCCAATGAGCAGTAAATTGTGGCAGTAttgaagaaagagaggaaaagcaaaaaaatgtcaTGAGTGAGAAGGAATTAAAGTTTTAGGGCTTATCAGGAGTCACAACAGTGATGACAGAGATTTCCTAACcttatattttgcatttgtaATGCATTGACGGCATATTGGACTTGATTTGTGAGTTTATTTTCTGGAGACGGCCTAGTTGGCCATGTTTCATAAGATACAGGGCCAGCACGTTTGGATTGTGATGAGAAATACTAATCATTGCTGTGTATTCGTTCAGGCATTATAATTTACAGCCTTCCCTGTATCTTGAATGTGTTCAACCTGAAGGCACCTTGGTGTACCTGTGGATCCGCTGTCCCTGTGCTACTCGTGTCTGTGTGGTTCTCTGGAGCATGACTCAAACTAACACTgcactttaccttttttttttgtcatgcatCAGTACAATCTGAGCAACATCTTGTCCACAAATACTTCTTGCTGTGAAACAGTTCTTACTTAATTTATTTGGATTATAAAATGTGTAACCATCCAAGCATGCTCTCAGCTCTGCTGTCTAACATAATGgacatattttattaaattaaacatgtaCCAGATTAAAGGTCTGGTTTA

Function

symbol description
wbp2 Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within cellular response to estrogen stimulus and positive regulation of gene expression, epigenetic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 107. Orthologous to human WBP2 (WW domain binding protein 2).

NR:

description
WW domain-binding protein 2-like

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914968.2 True 1722 mRNA 0.47 8 19845512 19853750
XM_026914969.2 False 1700 mRNA 0.47 8 19845510 19853750

Neighbor

gene id symbol gene type direction distance location
dhx32a LOC108273822,LOC108429422 coding upstream 4484 19830602 ~ 19841026 (+)
LOC113527774 LOC108273823,LOC108429440 coding upstream 19632 19727671 ~ 19825878 (+)
c12h10orf90 LOC108273407 coding upstream 125756 19694398 ~ 19719754 (+)
LOC113527107 NA coding upstream 472161 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 924744 18827636 ~ 18920766 (+)
mrpl38 mrpl38 coding downstream 9562 19863312 ~ 19871403 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 158957 20012707 ~ 20017504 (+)
LOC113527727 LOC108274321 coding downstream 333055 20186805 ~ 20200272 (+)
LOC113527333 LOC108273935 coding downstream 348844 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 405124 20258874 ~ 20288139 (+)
G199051 NA non-coding upstream 418915 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 530695 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 1020949 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 1076820 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 1141811 18703475 ~ 18703699 (+)
G199187 NA non-coding downstream 22991 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 90494 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 97037 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 381065 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 741491 20595241 ~ 20595444 (+)
LOC113527713 fam196a other upstream 278826 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1033248 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1335351 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1685424 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2273445 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1603641 21457391 ~ 21500929 (+)
G200571 NA other downstream 2149074 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2154761 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2160056 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2944392 22798142 ~ 22871284 (+)

Expression


Co-expression Network