hdlbpb (hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188)


Basic Information

Item Value
gene id hdlbpb
gene name hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23239297 ~ 23265400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914971.2
AACCGACTCTCGCAGAGTGAATCATTCTCAGTGTTTACACTGTCAGCTGTCAAAAACTAAACAAGCGACTCTTCTTCTCGTCTGATAAGGACTGAAAACGCCGACCAGCACTGAAGAGGTTACCGTAGCGCCCCTCAGGACGGACTCTCTGGTTTTCGACCCTTTGCAGCGGGAAAGCGGATCAACTCTTGTAACATGAGCTCGGTGGCTGTGTTGACTCAGGAGAGTTTTGCCGAGCACCGTAGTGGGCTGAAGGACACGCAGATCTCAGGTGGTGTTTCTGAGGATGAAGCGTACATCCCCACCTACCTGGAAGCCTTCCCTCCGTTGCCGGAGAAAGGCGCTCCGGGGGAGAGATCAGGAGAGCCAGTGGGAGCTTGGAGCAAAATTCGACCCATTAAAGCTTCGGTCATTACACAGGTGTTTCACGTGCCATTGGAGGAGCGTCGATACAAGGACAACAGCCAGTTcggagaaggagaagaggcGAAAGTGTGCTTAGACATCATGCAGAAGACCGGCGCTCACATCGAACTCTCTCTGGCTAAAGACCAAGGCCTTTCCATCATGGTGACGGGGAAGCTCGACTCGGTCATGAAGGCTCGCAAAGAAATCGTGGCTCGACTCCAGACTCAGGCTTCGGCCACGGTCATCATTCCGAAGGAGCACCATCGCTTCGTGATTGGGAAAAATGGAGAGAAACTACAAGAGCTGGAACTGAAAACAGCCACCAAGATCGCTATTCCCCGTCCCGACGACCCGAGCGCTAACATACGCATCACCGGTACCAAAGAGGGCATCGAGAAAGCCCGGCACGAGATCCTGCTCATCTCCGCAGAACAGGACAAGCGCGCAGTGGAGCGTCTGTCTCTAGAGAAAGTCTTTCATCCCTTCATCGCCGGTGCGTTCAACCGACTGGTCCAGGAGCTGAGCCAGGAGACAGGCGCTCGCATCAGCATCCCGCCACCCAGCCTGCTTAAGGACGAGATCGTCATCACTGGGGAGAAGGAAGCTGTCGCCATGGCGATCGCACGCATCCGCGCCATTTACGAGGAGAagAAGCGAAAAACGACGACCATCTCAGTGGAAGTGAAGAAGTCTCAGCATAAATACATCATCGGACCAAAGGGCAACAGTCTGCAGGAGATCATGGAAAGCACCGGAGTGTCGGTGGAGATGCCCCCGTTAGACTCCAGCTCTGAGACCATCATCCTCAGAGGAGAACCGGACAAACTGGGACCTGCCCTGACCCAGGTGTACGCCAAGgCTAAGAGCGTGATGGCAGTGGAAGTGACCGCACCAGCCTGGCTTCATCGATTCATCATAGGAAAGAAAGGACAAAACATCGGCCGCATCACACAGCAGCTCCCCAGGGTGCACATCGAGTTTACAGACGGAGAAGAGCGGATCATTCTGGAAGGCCCGACGGAGGAGGTGGAGCAAGCGCAGGCCCAAATCCAGGAGATTATTAATGATCTGATGTCGAGGATGGACTACACGGAAATTAACATTGACCAGCGTTTTCACAGACACCTCATTGGCAAGAACGGGGCAAACATAAACCGGATCAAGGAGCTGTACAAAGTGTCGGTGCGGATTCCTCAGGACTCGGATCGCTGTGGACTGGTCCGCATTGAGGGAGACCCGCAGGGAGTGCAGCGGGCTCGCAGGGAACTGGTGGACATGGCCCAGCGCATGGAAAACGAACGCACCAAAGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATCGGTCAGAAGGGAGAGAAGATCAAAGAAGTGCGAGAAAAGTTTCCTGAGGTCATCATCACGTTTCCTGACCAGTCTCAGAAAAGTGACATTGTGCAGCTCCGTGGGCCCAAGAATGAGGTGGAGAAATGTGCCAAGTTTCTCCAGAAACTCCTGGTTGAGCTGGTTGAAAGCAGCTACTCGATATCTGTTCCCATATTTAAgcagtttcacaaaaatatcaTCGGCAAAGGAGGTGCCAACATCAAAAAGATCCGTGAAGAGACCAACACGAAGATCGATCTCCCCACGGAGAACAGCGAGTCAGAGACGATCGTCATCACTGGTAAGAGGAGTAACTGTGAGGCAGCGCGGGACCGCATCCTCGCCATCCAGAGAGACCTGGCGAATCTGAAGGAAACGGAGGTGAGCATCCCGGCCAAGCTGCACAACTCTCTGATCGGGTCGAAGGGGTGTCTGGTGCGCTCCGTGATGGAGGAGTGTGGAGGTGTTCATATTCACTTCCCCGCCGAGGGCTCAGGGGTGGACAGGGTGACCATCCGTGGGCCTGCAGGAGAGGTGGAGCGAGCCAAGAAACAGTTACTGCAGCTCGCTGAAGAGAAGCAAGTCAACAATTTCTCAGTAGAGCTGCAGGCCAAGCCCGAGTACCACAAGTTCCTGATTGGCCGAGGAGGGGCGAACATTCGGCGTGTCCGTGACCGGACTGGAGCTCGCATCATCTTCCCTTCGCCTGATGATCCGGAGCAGGAGCGCATCACTATCATGGGCCGAGAGGAAGCAGTGCTGCTCGCTCAGAAAGAGCTGGAGACCCTCATTAAAAACCTGgaggACGTGATAGAGGACACTATGATCGTGGACCCGCGGCATCATCGTCACTTTGTCTGTCGGCGAGGGCAGGTGCTGAGGGAGTTAATGGAGGAGTACGGTGGTGTTGCCGTTAGTTTCCCTCGTACAGGAACACACAGCGACTGCATCACTCTGAAAGGAGCCCGAGAGTGTGTGGACGCTGCAAAGAAGCGCATCCAGGAGATCATTCATGATCTGGAGTCTCAGGTGAGTGTGGAGGTGGTGATTCCTCAGCGCTACCACAGAGCTATAATGGGGCCCAAAGGCTGCAGGATCCAGCAGATCACCCGAGAGCACGAGGTCCAGATCAAATtcccagagagagaggaaacagcagCTCAGGAAACCTCTCCCGTGGAGAACAGCAGCACCAGCCCCGAGACGGACTCCGTGCCTCGAAAATGTGACATCATCACTGTGACAGGTCGTGCAGAGAAGTGTGAGCTGGCACGATCGGCCCTGCTAgcGCTGGTTCCTGTGACGGTTGACGTCGAGGTGCCCTACGACCTGCACCGCTACATCATCGGCCAGAAAGGAGCCGGAATCAGAAAGATGATGGAGGACTACGAGGTGAACATCTGGGTTCCTCAGGCTGAGCAGCAGTCTGACGTGATAAAGGTCATGGGGCAGGAGGTCAGCGTGGAGAGAGCCAAGCAGGCGCTGATGTGCAGAGTCAAAGAGCTCCAGGCAGAGCAGGAGGAGCGGGCCTTACGGAGCTACAAGGTGACCCTCTCTGTCGACCCTAAATACCACCCCAAAATCATCGGCCGTAAAGGAGCCGTGATCTCGCAGATCCGGAAAGACCACGACGTCAACGTGCAGTTCCCTGACAAGAGCGATGAGCAGCAGGATGCGATAGTGATCTGGGGTTATGAGCGGAACGTGGAGGAGGCCAAGGCAGCTATAGAGCAGATGGTCGCAGAGCTGCAGGAGATGGTGAGCGAGGACATCCGGCTGGATCACCGGGTCCACGCACGCATCATCGGAGCTCGCGGCAAGGCCATCCGCAAACTCATGGAGGAGTTTAAAGTAGATATCAGGTTTCCTCAGCCAGGCTCGGACGACCCCGACAAAGTGACAGTCACAGGCCTGCCAGAGAACGTCGATAAAGCCATCGACCATCTCCTCAACCTGGAGGAGGAATACATGTTGAGTGTGACTGAGACAGAAACGCTGGCTGCCTATATGAAGCCTCCGTCCCGGTTcgtgggaggaggaggagacgaGGAGAGCCGAGGCCCAGCTAAAGGCTTTGTCGTCAGAGACGCTCCGTGGAACGTCCCAGGCAGCAAGgcccCTGACATGAGCAGCGCTGAGGAATTCCCTACATTTGGCTCTGTTGTGGCGCCAAAACAGACGTCTGCCTGGGGGCCCAAAAAGTTCTGAAAGAGAGCGAGACGTGACTTATccctacctgtctctctctctctctcacgtctGTTCCTATAAACATCAAGGAGAACCCACAGAACATTTTCAGTATGTACATGTAGCTTCCTCCCAGAGCTGATCTCGTGCTCTTTCTATCCTCTCTTTAAATGCCAGCGGCAGTTCGGACTGATCTGATCATGTCAACTGCACTCGTCTCCATTCTCTCATTGaaatgaaattacacacattttaacttCTCAACCCGAGACGTCACTCGTTTCCTCTTCCTAGCGATGGTGGACGTGAATCgttttagattttaaataattgctTTGAGTCATTCCAAACTCTCTCAAACAGCTACGATTTCTACTGGCACTGATGATACACTTTTATAATTTAGAGAACCCGTAGTTCACTGTGtggttggttttttttatagcttttaatgaaagtgtgtgtgaatcaggGCCTCGTTTATAAAACTCTGCGCACGCACAAAACAGTCAGTTCCAACCAGCACAAGATTTCAGTCTCACTCTGTATCCTTAGTGTAActgtaagtaaggaatgaatgaagttacaggaaaataattcagcacggggtggtgtgaagtgtgagttagataaccactctgtacaaccgtgatgagctgaaaagcatcacAAGAAGATGAATCTTGGGGTGGATGAGCTAGAACAGGAGAAGTTCAactcctgccagccaagaacaggaagctgcAGTGGACactggggaaaaagaaaaaaaaaaaaaactgacgaAATCAGTTTTCGTACTGACGAAATCATCTTAACTCctaactattttaattttaatcatgACTGATAAACTCGAAGGAAAATATCATTGTTTTTCAGGTTTCCTTTTCAGTTCCTTACTTTTCCACTGACGACtcagaatttcacacacacttccatgaTGTAAATGCTTTCTGAGGACTGTTTTATGCGTACGCAGTGTTTATAACCGAGGCTGAAGAAGCGCTTGGTGCTTTTAGCTGTTcctttttactgtaaaaaactgttttattattattattattattattattattattattattattggtctTGGAACCAGAAAGTAGCGGTCCATATAGTCTCATCTGGAGATTAACCTGTgaagaatatttattatatgatctctttttttttttttttaagtttcttatttatttaatctgtatTGTACATATTTGCAAATGcgtgtatatatttgtttttgtctctaATTATGTGCTTTCACTTTAGATGTAGTGATTAGAGAAGTTCAGAGGTGAACTTTGTAAATGCAGGGTAAGAAAGGTCATGTACACGTCTTTTTAAAgatgcagtttgtaatgttgaaTGCTGAAATGTGAATTGCAGTTAGAATAAAACAGTGACGAGACTCCCCCTTCCCCTCAGCAACCCCACCTGCtctaatgtatatatacacgGCTTATTAGAGGTCATTTCAGGGccggaaaaaatgaaaatcaaaagCATGAAACAAAGAAACGATCCCAGTCTATTACAGGGAAATGTTGCGGATTAACAGTTTTTCTAAGCGTATCTTAGAAGCAACATGATAAACCCAAGTTTAGAAGCacttttaaaattacaaactgcacctttaaatgtttTCAGCGATCGTGGCATTTTGTGTACAGTTTTTTGAACAGAAACTAAACTTTTTTTCCACATCTA

Function

symbol description
hdlbpb Predicted to enable mRNA binding activity. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein).

NR:

description
vigilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914971.2 True 5679 mRNA 0.50 28 23239297 23265400

Neighbor

gene id symbol gene type direction distance location
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding upstream 71810 23132483 ~ 23167487 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding upstream 385801 22849303 ~ 22853496 (+)
pkd1b LOC108273530,LOC108429150 coding upstream 391731 22807179 ~ 22847566 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 537461 22508418 ~ 22701836 (+)
LOC117598678 NA coding upstream 996522 22240505 ~ 22242775 (+)
LOC113527736 NA coding downstream 50193 23315593 ~ 23321228 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding downstream 136783 23402183 ~ 23420064 (+)
si:dkey-219e21.2 LOC108273732 coding downstream 161475 23426875 ~ 23436725 (+)
mfsd8 mfsd8 coding downstream 181743 23447143 ~ 23459505 (+)
si:dkey-219e21.4 LOC108273735 coding downstream 200957 23466357 ~ 23472229 (+)
G201077 NA non-coding upstream 133389 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 135798 23103284 ~ 23103499 (+)
G201019 NA non-coding upstream 370459 22866908 ~ 22868838 (+)
G200807 NA non-coding upstream 891179 22347890 ~ 22348118 (+)
G200784 NA non-coding upstream 996985 22124233 ~ 22242312 (+)
G201186 NA non-coding downstream 3227 23268627 ~ 23269419 (+)
G201234 NA non-coding downstream 109674 23375074 ~ 23380990 (+)
G201240 NA non-coding downstream 194602 23460002 ~ 23460455 (+)
G201281 NA non-coding downstream 435319 23700719 ~ 23729010 (+)
G201284 NA non-coding downstream 453647 23719047 ~ 23722939 (+)
G201154 NA other upstream 32918 23205666 ~ 23206379 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 368013 22798142 ~ 22871284 (+)
LOC113527202 NA other upstream 1212816 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 1226993 22008511 ~ 22012304 (+)
G200571 NA other upstream 1236023 22002824 ~ 22003274 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 7174 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 45860 23311260 ~ 23318154 (+)
G201214 NA other downstream 58673 23324073 ~ 23329571 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 339437 23604837 ~ 23688417 (+)
G201962 NA other downstream 1116387 24381787 ~ 24382287 (+)

Expression


Co-expression Network