ppm1bb (ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052)


Basic Information

Item Value
gene id ppm1bb
gene name ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17643020 ~ 17669237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914979.2
ggttcagccaatcagagagctcCATCACAAGCTCCCTCCCCTTCACAAGACTCTGACCCGATGAAGAGCTTGGCCCTCTCTATGGGAGAAAGATCATTTTCAGTGTCCGCACAGTTCTTTATTTCACCCCGGGAACCTTTATTCATGCGAGACTTTCAATAATTTCATGTTTAGGGCGGTGAGTTGTTTTGGGGCGCAAAAAACTGGCCCTAAAATGCCAAAGAATTCACGCTGTGAAACACCGAAAACGGAATTATCGGCTCTCATGTAAAGTCAAAtctgtttgattgtttttttaaagaagcgAAGTGAAGAATTTGGGATAAAATATCCAGAGGTTATAAACAGAAGTCGGAACGGAGTCCAGATATCCGTGTTATTGTATAAGATTGTGTCCTAAGCCATGGGGGCATTTTTGGACAAGCCAAAAACGGAGAAGCACAATGCCCACGGTGCAGGTAACGGCCTGCGTTTTGGTCTGAGCAGCATGCAGGGCTGGCGGGTGGAGATGGAGGACGCTCACACAGCAGTGGTGGGCCTCCCTCATGGCCTGGATGACTGGTCCTTCTTTGCCGTTTACGACGGGCATGCCGGTTCACGTGTGGCCAACTACTGCTCAAAACACCTACTGGAGCACATTATCAGCAGCAGCGAGGACTTCCGGCCTGGTCGTGACTCGGTGGAGGGCGTGAAGAGCGGAATTCGCTCTGGATTTCTGAAGATAGATGAGTACATGCGCAACTTTTCTGAGCTGCGTAATGGTATGGACCGTAGTGGCTCAACAGCTGTGGGCGTGCTGCTCTCGCCTGAGCACCTCTATTTCATCAACTGCGGCGACTCTCGTGCCGTGTTGTGCCGTGCTGGTCAGGTGCGTTTCTCCACTCAGGACCACAAGCCCTGCAACCCTCGTGAGAAGGAGCGCATCCAGAACGCTGGCGGCTCCGTTATGATCCAGCGTGTCAACGGCTCCCTCGCAGTGTCACGTGCCCTTGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCTGAGCCTGAAGTGTTTGAGATTCCTCGTgttccagatgaggatgagtttgTGGTGCTGGCTTGCGACGGCATCTGGGACGTCATGAGCAACGAGGAGCTGTGTGAATTTGTGCGCTCCCGTCTGGAGGTGTGCGATGACCTAGAAAAAGTCTGCAACTCTGTGGTGGACACATGTCTACACAAAGGCAGTCGTGACAACATGAGTGTTGTGCTGGTGTGTTTGCCCAATGCACCCAAGGTATCGGAGGAGGCAGTGAAGAGAGAGGCAGAGCTGGACAAGTTGCTGGAGTGTCGTGTTGAGGAGATCATGGAGAAGTCAGGAGAGGAAGGTGTCCCGGACCTGGCTTGTGTCATGCGCAACCTCTCTGCTGAGAACATCCCAAACTTACCACCAGGAGGTGGTCTTGCGAGCAAACGCAGTGTAATTGAGGCCGTGTACAACAGGCTTAACCCACATAGAGAAGATGATGGGGACGACCAGGGAGGTGCGGCTGGCGAGGATGAAAAGAGCAGCGCTGCTGCCCATCTCCTGGAGGTGCTCCGGCAGTTCCGCCTCAGCCACCGGGGCGAGTATCGCCACGTGCTGGAACAAGCCCTCTCCACCTACCGGCTGTCCAGTGCTCAGGAGGAGCGTCCCTCACACCCGCCATCCACTGCCAGCGAGTCTCTAAACTCCGAGGACGGCACAGAGGAGGCAGCCATGCCAGCAGCGCTTGACGAGCTTTCCAATCCTCCTCTCGCATGACCCTTGATACCAATTTAGTCATTTTCAGACCCCAAATTTCCTCCTTCCTCCCTGGCTCGGAGTACTAGTCAGCTTCCTGAATACCCCATGGCACGTCTCCCTTTCAGCACAGTTCCAGTGCAGGTTTTTGGTTAATTATTTGGTTGTATTTCAGTATTAATGTGGAGAGAGAATTTGGCCCGAAATCAGGGTCATTCATTCCTCAACAGGAATGTCAATAAAGAGAAAGGTTAGATCACTATTCTTGTAACTGAAAACCTGCCCAGTAACTGTAAATGATATCCTTGGCATATTCCAGCCCTGTCTACAAGTCAGCACTTTTCTGATGTGTAGCACTTAGAATTGATCTAATCTTAACCTTGTGGAATCTATATTTAGCCGTGAGCGAGAATTTCAGTGGTGCCATGGAATCGACCCTTTgtgatataaatacaaaaaaaacctcacaacCCTTTTGGATGTGTTATTCCTGTGTTTACACTATTGGACAAGATAAAAATGGATTATACAAACTGGAGCTTGCCAAGGGCATTGGTCGCTTCTTGCTCTCGTGCACTACAGCACATGCAGCTTGCCATGCACTGCATGTGTATGTTGCATTTTGGTTGTAAGAAGTGTGCCTGTGTGTAATGTTTGATAAATTTGTGTAGCAAAAGAcgaaaaacaaaccaaatatgAACAATTAGTTTTGAACAATATATCCGTGACTTAAGTATTCCGTTGAGTACATGTGTCTGTCTGGTCCATTGCCTACATGTGTGTATGATCAAAGTCTCACATTTGTTTGCTGTCGTCTCTGAGTGTTTGGGGAGGAAGAAGGACTCACCAGGGTGTTGCTACTAAAAGcacatgaatgtaaatgcaatCACACAAAGTTCTAAATGGAATAATAATGGAACAACgttatttctcttttaattcAAATCCATGGTCATTTGTTCCTATAAAAACTGGTGACAGGACCTCTGGAAGAAGATGAGCTTCGTCATCACATCACAGTCCTCAGGTTAACTGACAGACCATTACTATTACAAAGATACCTGTCTTTTGCATAGTTTGCACATAAATGCTTATCTGTCAGTATGTGAACTGGATATTTTGTGATCCTGTCCACAAAGTTTGTGTCATGACCAAAGATACTATTGCTTCTGCCttctgttataatttttttcccatgtAAAAGGGATGTGGAAATAATTAGCAAAAATGTTGACGTTTGAGATAATTGCATACTGAATTACATGCATAATCCATGCTGTAGTACTTCCAAAAGTGATCATAActgcatgtgtatgtaatatattttaccCCTTTAATCCTTTGACTTACCAGCCCTCAGTAATCAGTACAGTTATTTTTATGGTTTGGGTTTGTGCTATAGCAAGGCAATGTGTTAGTTCAGTTTGTTTGATTCTGcggttattttttaaataaattgcattGAACAACTTA
>XM_026914980.2
ggttcagccaatcagagagctcCATCACAAGCTCCCTCCCCTTCACAAGACTCTGACCCGATGAAGAGCTTGGCCCTCTCTATGGGAGAAAGATCATTTTCAGTGTCCGCACAGTTCTTTATTTCACCCCGGGAACCTTTATTCATGCGAGACTTTCAATAATTTCATGTTTAGGGCGGTGAGTTGTTTTGGGGCGCAAAAAACTGGCCCTAAAATGCCAAAGAATTCACGCTGTGAAACACCGAAAACGGAATTATCGGCTCTCATGTAAAGTCAAAtctgtttgattgtttttttaaagaagcgAAGTGAAGAATTTGGGATAAAATATCCAGAGGTTATAAACAGAAGTCGGAACGGAGTCCAGATATCCGTGTTATTGTATAAGATTGTGTCCTAAGCCATGGGGGCATTTTTGGACAAGCCAAAAACGGAGAAGCACAATGCCCACGGTGCAGGTAACGGCCTGCGTTTTGGTCTGAGCAGCATGCAGGGCTGGCGGGTGGAGATGGAGGACGCTCACACAGCAGTGGTGGGCCTCCCTCATGGCCTGGATGACTGGTCCTTCTTTGCCGTTTACGACGGGCATGCCGGTTCACGTGTGGCCAACTACTGCTCAAAACACCTACTGGAGCACATTATCAGCAGCAGCGAGGACTTCCGGCCTGGTCGTGACTCGGTGGAGGGCGTGAAGAGCGGAATTCGCTCTGGATTTCTGAAGATAGATGAGTACATGCGCAACTTTTCTGAGCTGCGTAATGGTATGGACCGTAGTGGCTCAACAGCTGTGGGCGTGCTGCTCTCGCCTGAGCACCTCTATTTCATCAACTGCGGCGACTCTCGTGCCGTGTTGTGCCGTGCTGGTCAGGTGCGTTTCTCCACTCAGGACCACAAGCCCTGCAACCCTCGTGAGAAGGAGCGCATCCAGAACGCTGGCGGCTCCGTTATGATCCAGCGTGTCAACGGCTCCCTCGCAGTGTCACGTGCCCTTGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCTGAGCCTGAAGTGTTTGAGATTCCTCGTgttccagatgaggatgagtttgTGGTGCTGGCTTGCGACGGCATCTGGGACGTCATGAGCAACGAGGAGCTGTGTGAATTTGTGCGCTCCCGTCTGGAGGTGTGCGATGACCTAGAAAAAGTCTGCAACTCTGTGGTGGACACATGTCTACACAAAGGCAGTCGTGACAACATGAGTGTTGTGCTGGTGTGTTTGCCCAATGCACCCAAGGTATCGGAGGAGGCAGTGAAGAGAGAGGCAGAGCTGGACAAGTTGCTGGAGTGTCGTGTTGAGGAGATCATGGAGAAGTCAGGAGAGGAAGGTGTCCCGGACCTGGCTTGTGTCATGCGCAACCTCTCTGCTGAGAACATCCCAAACTTACCACCAGGAGGTGGTCTTGCGAGCAAACGCAGTGTAATTGAGGCCGTGTACAACAGGCTTAACCCACATAGAGAAGATGATGGGAGTGGAGGTGACCTGGATGACCCATGGTAGCCAGAGACACCCACAACTGCAGTCTTCAAATGAGAATGTCCTCAGttcacacaaaaagaaaatctttacTCACACCTTTTGGTTTTGATTCCGAGAGATTCATAGGAAATATTCAAAGCCTGGAACGAAAACACAAACGCATCAAAACACTTCTTTCGACGATGAGGAATCTGCAGAAATGGCaagatttttcttttagaaCTGCACCATTGTATGGTAGAGAGAAATAATTTCACTTTTTgttccatgttgttttttttgttttttttttccccttcccgCTGTAAGTTAACGGAGTGATGATGAGACTGAGGATTTGTGGCTTCTTGAGCTGTAGGAGAGACTCTGGACTTAATGGCTGGTGGACAGACTGCAGCACCAGCGAGAGCTCTGAGAGGGAGAGGCGAGGTGTTTGGACCTCTTGTCAGTGATGCAGGGTGCTCTAGCATGATGAGCTGCCCTTGCACTTCCTCACCTGTCTCATACATGGCTCTCCTCCTCACTCTACGCATGCACAGCTTTCCAGAGACATGACCGATAGGCATTACTTATTTTCAGTGTGTTCACCATGTTCAGCCACCAAATGCCACCAACTCTACTTAAATCCTGCATTTACACTCTTTTCTGATTTTCTCTCGTTTGTCATCCTGCTGCCTGAATATCCTTATATATCCTTTTGCATTTTGTTAGCAATTATATTTTGTCAGATGCTAGTTTTGGTGCTtgcagtaaaacaaaacaaaaaaaaagtagtagcACTCATTAGAACAAGCGTTAACTAGGACATGTGCACTCAGCAACTCGAGGGAAAATTAACTACTGTAGGGAGTGTAAATATGGTGAGCTTTTGGGTTTTGGGTGGCTTTGTGACCTTCTACTTCCTGTGGCACTCACGGTGAAACAGAGCTTCACAATCCAGTTCTAAAGGACCCTCAGCCGAATTCAGAATTTTTATCACATTCTACAGCCTttgatttaaatctgttttaataaGTGAAATCTATTTTTGTGCAGTAGATGATTTAGAACAATTGGGGATCCAGAAGAACTGGCTTCAACTGGCTAAAACCTCTCCTTTAAGACCTCCAGATCTTTTACCTTTGCGCATCCTCTCATTTCTCTACTTGTGGTCCTGACTTGTGGCTTgccttctgattttttttttttttttttctaaaaacagtGTACTATGTAGAACCatttaacacaaaacattttaacttaatttttaaacaattctgcattttaaagctttttattaaagcttttttcattataattaatGGTATAATTGGTATTATTTGCAGTTAGATTTGGTTACAGGGGAATAGCATGactttaaataaagtaattgaGACGGTTGAGGTTGGTAAAGTATTTCTAAAGCAAAACTGCTGAACTGCATGCATGCATATAATATTGTGATGTTTGCCAGAACAACAGCGAGCAAACACTACTCCAGTAGTACTGCAGTAGGTACTGGAATTTTTCATGGGTGAatctttttcccctcttcccTACCCCTCTTATTTCTCGAACCCCCTCTTTGTGTCTGGGTTGACAGTTATTTAACTTAACAGTATTTTTGGTTTCATATGTTAATCTGCGCCTGTGAGAATGACTGGAAGATGCTTGGCATTAATGGTTTACTCGCAGGACACTTGGCTTTGGATGAATGTACCCCTtgtttacacatatacacaaacatgcatgtATAACGTTGAACAACTTCTGTGTTGCTCATGCCTTTCGTGCataattatatacaaatatCAAAGTAGCCTGATTAGATATTTGAAATATTCACACATACTCATgcgtgacaaattaaaggaaaaatcagtGGATCTCTTGTACTGTGGAGGGCATTTTGCTGGTATGAAAGATGAAACCTGTctgtcctgatgggagtggttaATTCAGGAATGACAccacccccatccacagggcacgaggACTCAGAGTTTGAGtctaaaaatgatgtaaatctcATGCTCTGGCCTTCACAGTGACCAGAGCTCAACCCAGTTTCACAAACGTGGGAGACTGGAATCATGTGCTAGACATCGCTctgcaccaccaccaccaccatcaaaacacTGATTGAGGTAATATCTTTTGTAAGAATGTtgttcatctctccagtacagtttcagagacttgGAGAATCTGTGCCAAGGCCTGATGAAGCTGCTCTGGTAGATTGTGGTGACCTAACACCTTCGTAATACACGTTGTTAGTTTTTCCCTTTAGTTTGTCACCTGTCTTTTTGATAATCAGGCTATCTTGATACATACTTGTCATATATGCCCATTTGAGGTAGATGTTTGTCCACTCTACAGAAACTATGATTTGCATTCGAGGCctttctttaagaaaaaaaaaaaaaacaaaaaaaacttttctttccCCTCCCTACTGATTTCTCACTGACCTCACCTGATCTGGTGTGCAGCTTTAAAATGTGTGTCGTTCAATTTGAGATTATtgttaatgtgtatatatatatatttgcagttTTATTTCCCACTGGTACAAATAAATTGTAGCCATATGCTGGAAAGCTTAATTTTATGATGGTTAGAACTAGGAAATAAATTTACTAAATGAATTGAAATGGCAaaagatatatattttgtgCTGTGGGTGCTCATGGACATGCACCCGATTTTTTTGTATATCTACAATGATTGATGACTAGATTGATTGTTGcgacagattttatttattcagaagATGTGGCTTTATGAGATGTGCTTTGTGAGAGCGAGGAGGGTTTGAGAGGAGTTGGGAGGGGGGAGATTGCTGGCCCAATCTGTTTTTGAGATTGTGATGGAGGGCtgtctcgttttttttttctttcctcagtCTATTAATCTCTTGCACTCTTTCTCGCTCCCAcattctctcttcctccctgaCTCCATCTCTCTGACCCTCTCTATCCACCTGCTAACATCCGTGTAATTATAGTCCCCAGTACAATGTTGTGTTTCATTAGGATACAGTGAAATGATCTGTTATCAATAAAGGATTGTTAAAGGTTTGATAATA

Function

symbol description
ppm1bb Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Acts upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B).

NR:

description
PREDICTED: protein phosphatase 1B-like isoform X1

GO:

id name namespace
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914979.2 False 3247 mRNA 0.47 6 17643020 17665378
XM_026914980.2 True 4607 mRNA 0.44 6 17643020 17669237

Neighbor

gene id symbol gene type direction distance location
trnai-uau_6 NA coding upstream 65644 17577283 ~ 17577376 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 155294 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 169195 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 316050 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 368459 17125184 ~ 17274561 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 39679 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 63523 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 126791 17796028 ~ 17822290 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding downstream 163568 17832805 ~ 17850858 (+)
mmrn2b LOC108273952 coding downstream 199625 17868862 ~ 17878282 (+)
G198091 NA non-coding upstream 66434 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 68787 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 73858 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 77989 17564599 ~ 17565031 (+)
G198078 NA non-coding upstream 100948 17541856 ~ 17542072 (+)
G198088 NA non-coding downstream 943 17670180 ~ 17670945 (+)
G198158 NA non-coding downstream 194302 17863539 ~ 17912523 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 246189 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 264793 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 268295 17937532 ~ 17937771 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 70955 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 779525 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3318739 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3608877 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4083935 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 485908 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 772649 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1136840 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1857405 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3788154 21457391 ~ 21500929 (+)

Expression


Co-expression Network