ubald1a (ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145)


Basic Information

Item Value
gene id ubald1a
gene name ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10812145 ~ 10821178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914993.2
CTTACCCCAGCGCTCCTAcagtaaatatttgtgtttgctcAGCCGGCTGTAATGGTGGACGACTGAGAAAGGAAAGGGGAGAAACATCATCGGAAAAATTGAATCCCAGACCAAACACTACCGTCCGCGGCTCGGAAATACACTCCGGCGAACATGGATGAACTAAAACATCAAGTGATGATAAACCAGTTCGTCCTGACAGCTGGATGCGCCGCAGATCAGGCCAAACAGCTTCTGCAAGCGGCACACTGGCAGTTTGAGACAGCCCTCAGTGCCTTTTTTCAAGAGACTAATATCCCATACGGTCACCATCATCAGATGATGTGTACACCAGCAAACACGCCGGCGACTCCGCCTAACTTCCCTGACGCACTCACCATGTTCTCCCGCCTCAAGGCATCGGAAagcttcagcagcagcagccccAGTATGGCGTCCATGGCCACCTCTCCCCCTCCACCCCCGGTCAGCTGGGGCATGACTCCACCCGTGGCCAGCCAGCAGGGATTATGGACTCAGGGCCCTCCGGGCACACAGGCTCACCCTCCCCCGGGCTGGCCGTCCACTGTCAACCAGCAAGCAGCCGCCGAACAGAAGGCCAGCGTGGCCATGGAGGCTGAGAGATGAGGAGCAGGACTGCACGGCCCCTCTCCCCACTCTCACTGGGGTGGTAGAAAAGGGGAGGAGTGAGGCAAAAGGTTGGGGGTACGATTGTAGGGAGGAGGGGGGCAGGACAGGGGGCAC

Function

symbol description
ubald1a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBALD1 (UBA like domain containing 1).
ubald1 Orthologous to human UBALD1 (UBA like domain containing 1).

NR:

description
PREDICTED: UBA-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914993.2 True 744 mRNA 0.58 3 10812145 10821178

Neighbor

gene id symbol gene type direction distance location
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 32570 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 83594 10726693 ~ 10728551 (+)
aqp8a.1 LOC108274292 coding upstream 87486 10722440 ~ 10724659 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding upstream 91463 10713814 ~ 10720682 (+)
LOC113527483 NA coding upstream 118646 10690548 ~ 10693499 (+)
shisa9a shisa9 coding downstream 90940 10912118 ~ 10937879 (+)
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding downstream 275787 11096965 ~ 11100503 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178 coding downstream 315679 11136857 ~ 11141931 (+)
cdc42ep1a cdc42ep1 coding downstream 328904 11150082 ~ 11158390 (+)
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding downstream 365147 11186325 ~ 11200049 (+)
LOC113527761 NA non-coding upstream 22128 10788767 ~ 10790017 (+)
G194201 NA non-coding upstream 31261 10780663 ~ 10780884 (+)
G194113 NA non-coding upstream 100130 10711321 ~ 10712015 (+)
G194091 zdhhc4,LOC108274079 non-coding upstream 149682 10594229 ~ 10662463 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding upstream 151195 10659878 ~ 10660950 (+)
G194276 NA non-coding downstream 143772 10964950 ~ 10965617 (+)
G194278 NA non-coding downstream 144460 10965638 ~ 10968033 (+)
G194365 tnfrsf17 non-coding downstream 240986 11062164 ~ 11063682 (+)
G194293 NA non-coding downstream 271985 11093163 ~ 11096178 (+)
G194380 NA non-coding downstream 299140 11120318 ~ 11120550 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 165598 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1120550 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1296529 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1298310 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1299514 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 412412 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 465019 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 792721 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1241630 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1651501 12472679 ~ 12473983 (+)

Expression


Co-expression Network