tbc1d12b (tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040)


Basic Information

Item Value
gene id tbc1d12b
gene name tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6437679 ~ 6460359 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914995.2
GCTCCTTCATGACGTCATGGGCATTTCCAAGATGGCTGCAATTCAGGGCCggagcagagagagagctagCGAGCAAAACTCCCGGTTTTAAGCTCGAAAGTGTTGGTTATTTGAGTGGTGTCGTTTTAAACGGTAATCATTTACCCTCAGACACACCACACGTTTCGCGTTTCAGCTTTCAGGTGACCATTTTCCGACATGGTGTGCGAGGAGGAAGTGCTAGCTGTGCTAGAGGTGCTAGCTCTGCAGCCAGCTCGAGACTGTTGTTATGGAGCCGAGTGAAGACTGGGAAAGTGAAGGGGGCTTGTGTCAGGGATGCCTGGATTAGACAGACTCTGGTTCTAAAGCTAGGCGTTTGGTCAGCTGATGTGAGCGCGGAAGAGCTCTGCTTCGCCGCTGGCTCGGGCTGTGGATAAAGGCGTCTGGGAGAGCAGTGATAGCGCTCAGGCACCGGGTCTCTCAGCCGCCGTTGGGACTGAATCTCCCGGTCATGCCGCCATTAACGGACTCGCCGAGTCACCGAGGGAGCTGATGGTCGCGTCAGCCGCCGCTCATGTTACGGGTAACCGAGGCGCAATGGACGGACCGGACCCACAGGAGGACAACTTCCGGCACGGCGACGGAAACGACAGCCGCCCGACGCGAGATGAGAGCAACCAGGACCGTGCGTTACCGCGTTACACTAGTCCAGCCAATCAGCGCGCTGCGATCAAGCTCCCGAACGGTCACGTGAGCTGCATGTGCGACGCCCGTGACCCGTCCCAAAAGTGCTCTTGCCCTGAATCGGGTGAGGTGGTGGCTAACGGTGAACTGCTGTCAGatgctgatgctgctgctgcatccTCAGCTGCACCGTCGACCAGTTCCACCCTGTGTGCTCCGAGACCTTGGGCGGGTCCCGTGAGCCcacaaaatgatgatgatggtgatgatgatgatgatgatgagccCAGCGCTTCGAGGTCGGGTCATAGGTCCTCGTCGTCCAGCTCGGAGGCTGTCGAAAGGACTCGGGAATCGGAAACGGCCTCTAATGACTGCTTATCCGAAGCTGAGCCGTGCTCCTCCCGGACTCTCTCAAGCCCCGAGGACAGCGAGCCCTGTCCGGACCCGGCGTTCATGGACGTGAGCCTGAGCTCGAGGAACACGTACGAAATCAGCCGGCGCCAGAGCGCCCCAGACAACGTGGCCGACGTGGCCGAGCCGGCCCTGAGACAGAAGAAACATGGCATCTCCGAGATCTTCGGCAGGGGCCTGTTCTCCAGAAAGCAGAAAGAGTCTGCAAGTGCTCCTGGCTGGAAGCTGTTTGGGAAGGTCCCACCGCGAGAGAGCCCTCCCAAAGACTCCAAAACCATCCAACAGgaGAGTAATCCAGGCAATCTCACGTCTGTTTCAACTCCCAATCTCTTAAGTGCCGGggAATATGAGGCTAAGGCTGGCAAAGGAGCCCATAGCCCATCCCTGCCTACTCAAGGGCGACGTAAGAATCTGGAGTTTGAACCACTGTCCACCACGGCACTCATATTAGAAGACCGGCCAGCTAACCTTCCTGCTAAACCCGAGGAGGAAGCTCAGCGCCACCGGCAGGAATACGATGAAATGGTGGCTGAGGCCAAGAGGAGAGagATGAAGGAAGCccagaagaagaagcagcagatGAAGGAGCGCTTCAAGCAGGAGGACAGCATCGTTAACGCCATGGTGGTGTGGAACACGGAGGTCCTGCCCAACTGGGACAGCATGCGTGGCACACGCAGGGTTAAAGATCTGTGGTGGCAGGGTCTTCCACCCAACGTCCGCGGCAAAGTGTGGAGCCTAGCCATCGGCAACGAGCTCAACATCACCCCAGAGCTATACGAGATCTTTCTCTCCCGGGCTAAGGAGCGTTGGAAGAGCTTCAGAGAGACAGGCAGCGAGGTCGAGGCAGAGGCGGACAGTGGAGCGTCACTGGCGGATCGGGAATCCAGCCTGGATCTTATCAAGCTTGACATTTCCCGCACCTTCCCCTCCCTCTTCATCTTCCAGAAGGGAGGGCCGTACCATGATCTCCTGCACAGCGTGCTCGGAGCGTACACCTGCTACCGGCCCGACGTGGGATACGTGCAGGGCATGTCGTTCATCGCCGCTGTGTTAATCCTGAACCTGGAGGAGGCCGACGCCTTCATCGCCTTCGCCAACCTCCTGAATAAACCCTGTCAGATGGCTTTCTTCAGAGTGGACCACGATCTGATGCTGAAGTACTTTGCAGTGTTCGAGGTGTTCTTTGAGGAAAATCTTCCCAGGTTGTTCAGTCACTTCCAAAGCTCCAACCTCACTCCAGACCTCTACCTGATAGACTGgatTTTCACACTCTACAGCAAGTCCCTGCCACTGGACGTCGCGTGCCGCGTGTGGGACGTGTTCTGCAGAGACGGAGAAGAGTTCCTGTTCCGCACAGCTCTGGGGATCCTGCGCTTGTACGAGGACGTGCTCCTCCACATGGACTTCATCCACATGGCCCAGTTCCTCACGCGTCTGCCCGAGCACGTCCCCGCCGAGCGCCTCTTCAGCGCcatccacaacacacacatgaccAGCAGCAACCGCAAATGGCCCCAGgtCTTCAGTGCACTAATGAAGGATAAGGAATCAGACAAAAGTGGCAGCCCTACCCTGAAAAGCTCCTGACGCCTCCATGCTACGCTTCAGTCTTACGtctttgtgttgtcttttcttctGAAGTTGTAATAacgctggtgagggagtgaAAGGTCAGGGAGTCAGCATGAAGACTGAAGTAGAACTGGTTCTCTCTGCAGTATTACAGACATGGCTAGCGATTAGATGTAGGTATAAATGTGCAACAGTTGCAAAGTCTCTGGAAAGAATCTCTCATGTGTTCCCATACAAGACACACACGCTTCCTCGTGAAGAAGAATATTCCACCACCAGCACGTTGATTTGCTGAGAAACGTTCTTCTGTTCCTCAGAAATGTTCCCACTGCATCGTAACACATGGACCAACGCGAACAGCTGTCATCCGTGTCATGTGCTATCGCCGCTTTCTTCCTCTAACGGTTAAAATGTTGCACTTAAAGCTGTGATGTTCATGAAGGATATTCTTAACACTACTCTCGAACAGAGCTTCAGGACTAGGAGAAGGCTGAACGTGTTAAAAGGAGTATTTTGTCTAAGCCGACTTTGATTAAGACGTATACGATGTGCAATGAAGGTTTGAAAAGCAGTCAATAAGAAGCTTTGCATGCTTGTCAAGGTCAGCTTTTCATTCCACAAGCCTAGTTTGGTTATGGGacgagtttttttttgtttgttttggggttttttttcctgatccaCATGTTCCTGCAGCGCTTCAGCTGTGACCGTGtttctcctaaaaaaaaaaaaaaacactaaattatCAAAGCACCTGTATGCTCAAATGAAACTGTCCTGTCTTAATATACATATTCTGTCCATTTCTATCTGTTATATTATTCGACCAAATGTATCTGTTCTGTCGTGGGTGCTCTGTTAACTCCAGTGCATTTTGTCTTTCGGGGatggaggggggaaaaaaaaggctttgaATGTTCTGCGCTGAGTCTCGGAttcatgattttaaaatgtacgttgtgtgttttaattctGACTTTCTTTTCTACTCACTCCCTGCTACTGTACAGTTTTCATACTCCCTGATGAGCAGAATTGTAAATATGCGATGAAGTGGACACCACTAAAAGTAGAGCACATGTAAATAAACCCGAGAGTGGAAACgtga
>XM_026914996.2
GCTCCTTCATGACGTCATGGGCATTTCCAAGATGGCTGCAATTCAGGGCCggagcagagagagagctagCGAGCAAAACTCCCGGTTTTAAGCTCGAAAGTGTTGGTTATTTGAGTGGTGTCGTTTTAAACGGTAATCATTTACCCTCAGACACACCACACGTTTCGCGTTTCAGCTTTCAGGTGACCATTTTCCGACATGGTGTGCGAGGAGGAAGTGCTAGCTGTGCTAGAGGTGCTAGCTCTGCAGCCAGCTCGAGACTGTTGTTATGGAGCCGAGTGAAGACTGGGAAAGTGAAGGGGGCTTGTGTCAGGGATGCCTGGATTAGACAGACTCTGGTTCTAAAGCTAGGCGTTTGGTCAGCTGATGTGAGCGCGGAAGAGCTCTGCTTCGCCGCTGGCTCGGGCTGTGGATAAAGGCGTCTGGGAGAGCAGTGATAGCGCTCAGGCACCGGGTCTCTCAGCCGCCGTTGGGACTGAATCTCCCGGTCATGCCGCCATTAACGGACTCGCCGAGTCACCGAGGGAGCTGATGGTCGCGTCAGCCGCCGCTCATGTTACGGGTAACCGAGGCGCAATGGACGGACCGGACCCACAGGAGGACAACTTCCGGCACGGCGACGGAAACGACAGCCGCCCGACGCGAGATGAGAGCAACCAGGACCGTGCGTTACCGCGTTACACTAGTCCAGCCAATCAGCGCGCTGCGATCAAGCTCCCGAACGGTCACGTGAGCTGCATGTGCGACGCCCGTGACCCGTCCCAAAAGTGCTCTTGCCCTGAATCGGGTGAGGTGGTGGCTAACGGTGAACTGCTGTCAGatgctgatgctgctgctgcatccTCAGCTGCACCGTCGACCAGTTCCACCCTGTGTGCTCCGAGACCTTGGGCGGGTCCCGTGAGCCcacaaaatgatgatgatggtgatgatgatgatgatgatgagccCAGCGCTTCGAGGTCGGGTCATAGGTCCTCGTCGTCCAGCTCGGAGGCTGTCGAAAGGACTCGGGAATCGGAAACGGCCTCTAATGACTGCTTATCCGAAGCTGAGCCGTGCTCCTCCCGGACTCTCTCAAGCCCCGAGGACAGCGAGCCCTGTCCGGACCCGGCGTTCATGGACGTGAGCCTGAGCTCGAGGAACACGTACGAAATCAGCCGGCGCCAGAGCGCCCCAGACAACGTGGCCGACGTGGCCGAGCCGGCCCTGAGACAGAAGAAACATGGCATCTCCGAGATCTTCGGCAGGGGCCTGTTCTCCAGAAAGCAGAAAGAGTCTGCAAGTGCTCCTGGCTGGAAGCTGTTTGGGAAGGTCCCACCGCGAGAGAGCCCTCCCAAAGACTCCAAAACCATCCAACAGgAATATGAGGCTAAGGCTGGCAAAGGAGCCCATAGCCCATCCCTGCCTACTCAAGGGCGACGTAAGAATCTGGAGTTTGAACCACTGTCCACCACGGCACTCATATTAGAAGACCGGCCAGCTAACCTTCCTGCTAAACCCGAGGAGGAAGCTCAGCGCCACCGGCAGGAATACGATGAAATGGTGGCTGAGGCCAAGAGGAGAGagATGAAGGAAGCccagaagaagaagcagcagatGAAGGAGCGCTTCAAGCAGGAGGACAGCATCGTTAACGCCATGGTGGTGTGGAACACGGAGGTCCTGCCCAACTGGGACAGCATGCGTGGCACACGCAGGGTTAAAGATCTGTGGTGGCAGGGTCTTCCACCCAACGTCCGCGGCAAAGTGTGGAGCCTAGCCATCGGCAACGAGCTCAACATCACCCCAGAGCTATACGAGATCTTTCTCTCCCGGGCTAAGGAGCGTTGGAAGAGCTTCAGAGAGACAGGCAGCGAGGTCGAGGCAGAGGCGGACAGTGGAGCGTCACTGGCGGATCGGGAATCCAGCCTGGATCTTATCAAGCTTGACATTTCCCGCACCTTCCCCTCCCTCTTCATCTTCCAGAAGGGAGGGCCGTACCATGATCTCCTGCACAGCGTGCTCGGAGCGTACACCTGCTACCGGCCCGACGTGGGATACGTGCAGGGCATGTCGTTCATCGCCGCTGTGTTAATCCTGAACCTGGAGGAGGCCGACGCCTTCATCGCCTTCGCCAACCTCCTGAATAAACCCTGTCAGATGGCTTTCTTCAGAGTGGACCACGATCTGATGCTGAAGTACTTTGCAGTGTTCGAGGTGTTCTTTGAGGAAAATCTTCCCAGGTTGTTCAGTCACTTCCAAAGCTCCAACCTCACTCCAGACCTCTACCTGATAGACTGgatTTTCACACTCTACAGCAAGTCCCTGCCACTGGACGTCGCGTGCCGCGTGTGGGACGTGTTCTGCAGAGACGGAGAAGAGTTCCTGTTCCGCACAGCTCTGGGGATCCTGCGCTTGTACGAGGACGTGCTCCTCCACATGGACTTCATCCACATGGCCCAGTTCCTCACGCGTCTGCCCGAGCACGTCCCCGCCGAGCGCCTCTTCAGCGCcatccacaacacacacatgaccAGCAGCAACCGCAAATGGCCCCAGgtCTTCAGTGCACTAATGAAGGATAAGGAATCAGACAAAAGTGGCAGCCCTACCCTGAAAAGCTCCTGACGCCTCCATGCTACGCTTCAGTCTTACGtctttgtgttgtcttttcttctGAAGTTGTAATAacgctggtgagggagtgaAAGGTCAGGGAGTCAGCATGAAGACTGAAGTAGAACTGGTTCTCTCTGCAGTATTACAGACATGGCTAGCGATTAGATGTAGGTATAAATGTGCAACAGTTGCAAAGTCTCTGGAAAGAATCTCTCATGTGTTCCCATACAAGACACACACGCTTCCTCGTGAAGAAGAATATTCCACCACCAGCACGTTGATTTGCTGAGAAACGTTCTTCTGTTCCTCAGAAATGTTCCCACTGCATCGTAACACATGGACCAACGCGAACAGCTGTCATCCGTGTCATGTGCTATCGCCGCTTTCTTCCTCTAACGGTTAAAATGTTGCACTTAAAGCTGTGATGTTCATGAAGGATATTCTTAACACTACTCTCGAACAGAGCTTCAGGACTAGGAGAAGGCTGAACGTGTTAAAAGGAGTATTTTGTCTAAGCCGACTTTGATTAAGACGTATACGATGTGCAATGAAGGTTTGAAAAGCAGTCAATAAGAAGCTTTGCATGCTTGTCAAGGTCAGCTTTTCATTCCACAAGCCTAGTTTGGTTATGGGacgagtttttttttgtttgttttggggttttttttcctgatccaCATGTTCCTGCAGCGCTTCAGCTGTGACCGTGtttctcctaaaaaaaaaaaaaaacactaaattatCAAAGCACCTGTATGCTCAAATGAAACTGTCCTGTCTTAATATACATATTCTGTCCATTTCTATCTGTTATATTATTCGACCAAATGTATCTGTTCTGTCGTGGGTGCTCTGTTAACTCCAGTGCATTTTGTCTTTCGGGGatggaggggggaaaaaaaaggctttgaATGTTCTGCGCTGAGTCTCGGAttcatgattttaaaatgtacgttgtgtgttttaattctGACTTTCTTTTCTACTCACTCCCTGCTACTGTACAGTTTTCATACTCCCTGATGAGCAGAATTGTAAATATGCGATGAAGTGGACACCACTAAAAGTAGAGCACATGTAAATAAACCCGAGAGTGGAAACgtga

Function

symbol description
tbc1d12 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome assembly. Predicted to be active in autophagosome and recycling endosome.

NR:

description
PREDICTED: TBC1 domain family member 12-like isoform X1

GO:      GO:0005097,GO:0032313

KEGG:

id description
K24795 TBC1D12; TBC1 domain family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914995.2 True 3763 mRNA 0.53 15 6437679 6460359
XM_026914996.2 False 3706 mRNA 0.53 14 6437679 6460359

Neighbor

gene id symbol gene type direction distance location
noc3l noc3l coding downstream 1673 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 137700 6285060 ~ 6299979 (-)
rbp4 rbp4 coding downstream 167045 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 272745 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 282797 6153790 ~ 6154882 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 4656 6465015 ~ 6504729 (-)
abi3b LOC108273397 coding upstream 47491 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 176996 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 267222 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 286693 6747052 ~ 6752732 (-)
G191788 NA non-coding downstream 141886 6293530 ~ 6295793 (-)
G191786 NA non-coding downstream 146767 6290411 ~ 6290912 (-)
LOC117598466 NA non-coding downstream 176081 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 185497 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 217298 6219812 ~ 6220381 (-)
G191947 NA non-coding upstream 3129 6463488 ~ 6488739 (-)
G191949 NA non-coding upstream 17830 6478189 ~ 6478817 (-)
G191950 NA non-coding upstream 19408 6479767 ~ 6481169 (-)
G192012 NA non-coding upstream 84673 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 161111 6621470 ~ 6622643 (-)
LOC113527291 LOC108274042 other downstream 646409 5768528 ~ 5791270 (-)
G191430 NA other downstream 823725 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 946754 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1374261 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1484820 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 86582 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 939641 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1120991 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1140859 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2387303 8847662 ~ 8857748 (-)

Expression


Co-expression Network