atad1b (atad1,atad1b,LOC107669218)


Basic Information

Item Value
gene id atad1b
gene name atad1,atad1b,LOC107669218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10201989 ~ 10214955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914999.2
ATATCGCCTTTATCCTGTGTAATGAGCCTCTGCGCTTCCAGATAGCGTTGTATTGTCTTCCTGTGAGTAAATCTGTGTGAAAGATCTGTGCGAGTCGGCGGCGTGAGTGTTGCACTGAAGAGAAAAATCTCAGTAAGCGTGCATTTGCCCCCTTGGTGGACAATTCTGCAAGAGAGGGCAGGAAATTACTGAAATGCTTACGCAAGCAGAAAATAGGGGGCGCTGCGCATCTGTTCAGTTGGTTTGCAACCGCTCATTAAAGCCACCGAAGAAGTAAAGGCGGAAGAATCGGCGAGTCGTCGAGGCATTTAGGTAATTATGGTGTTGAAGGAGATACCAGCAGACAATATCACCCGGCCCTTGGGCCGCAATGAGGTCATTGGTTTACTCTTCCGCCTTACGATATTTGGTGCTGTTACCTACTTTacaataaagtggatggtggaTGCTATTGAtccaacaagaaaacaaaaagttgAAGCACAGAAGCAGGCAGAGAAACTCATGAAGCAGATTGGAGTGCACAACGTCAAGCTGTCTGAGTATGAGATGAGCATTGCAGCCCATCTGGTGGACCCGTTAAGTATGCAAATAACGTGGAGTGATATAGCTGGCCTAGATGACGTAATAACTGAGCTGAAGGACTCAGTCATTCTTCCCATCCAGAAAAGGCATCTGTTTGAAAGGTCAAAGCTTCTTCAGCCTCCCAAAGGAGTGCTACTGTACGGTCCCCCAGGCTGTGGAAAAACTCTGATAGCCAAAGCCACAGCCAAAGAGGCCGGTTTCCGGTTCATCAACCTGCAGCCCTCCACTCTGACGGATAAATGGTACGGCGAGTCCCAGAAACTGGCTGCAGCTGTCTTCTCCCTGGCCATCAAGCTCCAGCCCTCTATCATCTTCATTGATGAAATTGACTCCTTTTTAAGAAACCGCTCCAGCTCGGACCATGAGGCTACTGCCATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGACTAGACACAGATTACAAATGCCAGGTTATAATTATGGGTGCCACCAACCGGCCTCAGGATCTGGACTCGGCTATTCTTCGCAGAATGCCTACTAGGTTCCACATTAATCAGCCTaATATCAAGCAGAGGGAATCGATACTGAGGCTCATCCTGGAGAATGAGAATATTGGGGCCAGCGTAGACCTGCGTGAAATAGCAAAACACACAGATGGCTTCTCGGGAAGTGACCTCAAAGAGATGTGTCGAGATGCAGCTCTGTTCTGTGTACGGGAACTCGTGCATGCTGAGGAGAGTTCAGAGGAAGACTACATCCGACCCATCCAGCAGACTGACCTCCAAAAAGCCactgaaaagatgaaaaagtcGAAATCGGCAGGAGCACCAAGTATGCTGCTGGATGCAGCCTTGGACTGATTCTGATACTACTGGCCAGGGTGAATTATTTCCCCAGAAGATTATAATACTTTTTGTAAATTTAACATGTTTATCATATAATATGGTTTGCATAAGAAGGTGCTCTAGAAACAGGATATTTGATCTATCAACTCTCTCTTTGCAatatgcctttttttctttttttttggctgtttttgcCACATCATACTATATGCCTTTTGGGCATTAGGTTTGCTAAGAACTTGCTGCATGGGATATTAGGagaatatttataaaactgtacagaAGCAGGCAACATGTGTATATAAAGCACCTAGGTCATATTCATTTCAGACAGTTAAAAAATAACAGATCAGGAAGGGAATGAGATTCCTTTGTATTTCTAAAGGATTTCTACTTGCTGGTTTGTTTAGTGACTTACGTTTACAGATACTGGATATATAGTGTagacacccctgttaaaattgtaggtttttgtgatgttaaaaatCAAAGCAAGATGTCGGTTCTATTTCCACCATTAACGGGACATAGCAGCCAATCTGAAGCCATTCCACTGTTGACTTGGATTagtgctttgggttgttattgtgctggaaggtgaaatttttcttcatcttcacctgtctaacagaggcctgcaggtttttatGGCAAAATaaatgctgccaccaccatgcttc
>XM_026915000.2
ATATCGCCTTTATCCTGTGTAATGAGCCTCTGCGCTTCCAGATAGCGTTGTATTGTCTTCCTGTGAGTAAATCTGTGTGAAAGATCTGTGCGAGTCGGCGGCGTGAGTGTTGCACTGAAGAGAAAAATCTCAGTAAGCGTGCATTTGCCCCCTTGGTGGACAATTCTGCAAGAGAGGGCAGGAAATTACTGAAATGCTTACGCAAGCAGAAAAGCATTTAGGTAATTATGGTGTTGAAGGAGATACCAGCAGACAATATCACCCGGCCCTTGGGCCGCAATGAGGTCATTGGTTTACTCTTCCGCCTTACGATATTTGGTGCTGTTACCTACTTTacaataaagtggatggtggaTGCTATTGAtccaacaagaaaacaaaaagttgAAGCACAGAAGCAGGCAGAGAAACTCATGAAGCAGATTGGAGTGCACAACGTCAAGCTGTCTGAGTATGAGATGAGCATTGCAGCCCATCTGGTGGACCCGTTAAGTATGCAAATAACGTGGAGTGATATAGCTGGCCTAGATGACGTAATAACTGAGCTGAAGGACTCAGTCATTCTTCCCATCCAGAAAAGGCATCTGTTTGAAAGGTCAAAGCTTCTTCAGCCTCCCAAAGGAGTGCTACTGTACGGTCCCCCAGGCTGTGGAAAAACTCTGATAGCCAAAGCCACAGCCAAAGAGGCCGGTTTCCGGTTCATCAACCTGCAGCCCTCCACTCTGACGGATAAATGGTACGGCGAGTCCCAGAAACTGGCTGCAGCTGTCTTCTCCCTGGCCATCAAGCTCCAGCCCTCTATCATCTTCATTGATGAAATTGACTCCTTTTTAAGAAACCGCTCCAGCTCGGACCATGAGGCTACTGCCATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGACTAGACACAGATTACAAATGCCAGGTTATAATTATGGGTGCCACCAACCGGCCTCAGGATCTGGACTCGGCTATTCTTCGCAGAATGCCTACTAGGTTCCACATTAATCAGCCTaATATCAAGCAGAGGGAATCGATACTGAGGCTCATCCTGGAGAATGAGAATATTGGGGCCAGCGTAGACCTGCGTGAAATAGCAAAACACACAGATGGCTTCTCGGGAAGTGACCTCAAAGAGATGTGTCGAGATGCAGCTCTGTTCTGTGTACGGGAACTCGTGCATGCTGAGGAGAGTTCAGAGGAAGACTACATCCGACCCATCCAGCAGACTGACCTCCAAAAAGCCactgaaaagatgaaaaagtcGAAATCGGCAGGAGCACCAAGTATGCTGCTGGATGCAGCCTTGGACTGATTCTGATACTACTGGCCAGGGTGAATTATTTCCCCAGAAGATTATAATACTTTTTGTAAATTTAACATGTTTATCATATAATATGGTTTGCATAAGAAGGTGCTCTAGAAACAGGATATTTGATCTATCAACTCTCTCTTTGCAatatgcctttttttctttttttttggctgtttttgcCACATCATACTATATGCCTTTTGGGCATTAGGTTTGCTAAGAACTTGCTGCATGGGATATTAGGagaatatttataaaactgtacagaAGCAGGCAACATGTGTATATAAAGCACCTAGGTCATATTCATTTCAGACAGTTAAAAAATAACAGATCAGGAAGGGAATGAGATTCCTTTGTATTTCTAAAGGATTTCTACTTGCTGGTTTGTTTAGTGACTTACGTTTACAGATACTGGATATATAGTGTagacacccctgttaaaattgtaggtttttgtgatgttaaaaatCAAAGCAAGATGTCGGTTCTATTTCCACCATTAACGGGACATAGCAGCCAATCTGAAGCCATTCCACTGTTGACTTGGATTagtgctttgggttgttattgtgctggaaggtgaaatttttcttcatcttcacctgtctaacagaggcctgcaggtttttatGGCAAAATaaatgctgccaccaccatgcttc

Function

symbol description
atad1b Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).
atad1 Predicted to enable ATP binding activity and transmembrane protein dislocase activity. Involved in extraction of mislocalized protein from mitochondrial outer membrane. Located in mitochondrial outer membrane and peroxisomal membrane. Implicated in hyperekplexia 4.

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 1-B-like isoform X1

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914999.2 True 2075 mRNA 0.45 11 10201989 10214955
XM_026915000.2 False 1984 mRNA 0.44 10 10201989 10214955

Neighbor

gene id symbol gene type direction distance location
rnls rnls coding upstream 35074 10135916 ~ 10166915 (+)
ankrd22 ankrd22 coding upstream 77147 10118888 ~ 10124842 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding upstream 100201 10097369 ~ 10101788 (+)
ch25h ch25h,LOC107753436,LOC107683723 coding upstream 123874 10077017 ~ 10078115 (+)
trnal-aag_8 NA coding upstream 137363 10064545 ~ 10064626 (+)
cyth3a cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157 coding downstream 24815 10239770 ~ 10254637 (+)
pms2 pms2 coding downstream 65731 10280686 ~ 10290416 (+)
rsph10b rsph10b coding downstream 75502 10290457 ~ 10296523 (+)
bhlha15 bhlha15 coding downstream 140822 10355777 ~ 10359207 (+)
trrap trrap coding downstream 202946 10417901 ~ 10487467 (+)
LOC117598497 NA non-coding upstream 53203 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 375125 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 377521 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 421034 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 548729 9652172 ~ 9653260 (+)
G193842 minpp1 non-coding downstream 9747 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 110001 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 135244 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 379274 10594229 ~ 10662463 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding downstream 444923 10659878 ~ 10660950 (+)
arhgap23b LOC108273815 other upstream 510394 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 686373 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 688154 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 689358 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 689588 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 429871 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1018635 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1071242 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1398944 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1847853 12062808 ~ 12085359 (+)

Expression


Co-expression Network