nrap (nrap,LOC107755535)


Basic Information

Item Value
gene id nrap
gene name nrap,LOC107755535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13204326 ~ 13219416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915025.2
CTGGCCTGTAGCAGATCTCAGTTTAACACAGGTCAGAGAGTAAACCACAAGTGGGAACAGGGGACTGTCTGGAAAGCTTTGCCTTCCCCCTGAGGTCTGCCCAAGACTACTGATTTTGGAGAACCTTTTGATATatgtactttatatatatatttttgtagtgAGTAAATTAATAGGGAAAAGATGAATATTCAAAACTGTGCCAGGTGTGGATTTGTGGTGTATCCAGCTGAAAAGGTTAATCTCATTGGTCAGAACTGGCACAAAGCATGCTTTCACTGTGAGGTCTGTAAGATGGTTCTCACTGCCAATAATTATATAAGTCATCAGAAGAGGCCATATTGTCAAGTACATAATCCAAAGAACAACACCTTCACTAGTGTCTATGAAACCCCTGTCAACATTAATGCCAAGAAACAGGCACAGGCTGTCAGTGAGATTAAATATCGAGAGGATGGCGAACGTTTCATGTCCACTTTCCACTATGATATGTCCAAAGAGATAGAGCAGGCTCGCAAGGCCAGCCAAATGACCAGCCAGGGCTATGAATCTGAATTTTCAGAGCAGCAGATATGGTACTCGGGGAGTGTAAGCAGCCAGGAGGTAGTTCGCATGACTCAGGCACAGAAAATCATCAGTGATGTGGAGTACAAGCGTGGCCATGAGGAGCGAGTGACACAGTTCACGTCTGTAGCTGACACACCTGGGATGCTGCATGCTAAGACTGGAACCTCACTGGCAAGCGATGTGAAATACACAGAGGGATATGAGCAATCCAAAGGAAAAGGCAGCTTCCCGGCCATGCTTACTCCAGCATACGAAGTGGCCAAGAAAGCCAACACTCTTGCAAGCAATGTCGAGTATAAGAAAGGACATGAGGAGAGGGTTTCAAAATACACCACTGTGACAGATACACCTGAGGTGCTACTGGCTAAAAGTCAAGGAAAGATAGCTAGTGATgttgtcTACATGGAGGAATATGAACAGCAGCGGGGGAAAGGAAGCTTCCCTGCCCACTTCACTCCTGGTTACCAAGTGGCCAAGAAAGCAAATGAAATGGCTAGCAAAGTGAAGTACCAGCAGAAGTATGAACAAGAGATAAAGGGTAAAGCTAGCACTGATGCTGGAGCAGCTGAGTTCACTCTGGCTAAAGAGAATGCAGAAAAGTTCAGCCAGCATGCCTATACTGAGGAATATGAGCAGCAGAGAGGCAAAGGAAGCTTTCCTGCTATGATCACTCCTGGATACCAGATGGCCAAGAAAGCCAATGACATGGCCAGTGATCTGAAATATAAGAAGGACCTGAATAAGATGAAGGGCTCTGCCTCTGCCTACCATTGCCTGACCCCCGATGACAACCTGGCGCTGAAGAATGCCTGCAAGATCAACAAGCTCGTCAGTGAGGTTGAATACAAGAAGGATCTTGAGAACACAAAAGGTCACAGCATCAACTACTGTGAGACACcacagtttaaaaatgtgtcCAAGATTGCCCAGTATACCAGTGATAATAAATATAAGGAGAAATATGCCAATCACATGAAGGGCCACTATGAAGGAACTGGGCTTGACAAGAAAACTATGCATGCCATGAAAGTCAGAAAGCTGGCCAGTGATATTTCTTATAAGTCAGGGTATGAACAGGAGCAGGGCGAATACAACTACCCTGCTGAAATCACCCCATCTTATCAGACCCAGAAGAAACTGGAGCCTCTCAAAGATAAAAATTACAGACAACACATTGACAAGCTGAAATACAGTCAGGTGACAGATACTCCTGACATTGTTCAAGCTCGAATCAACGCACAGCAACTTAGTGATTTGAACTACAAAGCCAACTATGAGAAAACTAAGACCCAGTATACCTTAGCTCAAGATACACCACAGCTTAAGACAGCCAAAGCCAATGCAGAACTCATTAGTGATATCAAGTATAAAGAGGAGTGGGAGAAGAGTAAGTCTAAAGCATGTGACATTGGTGTGGACACACTGACCTTCAAAGCTGCTAAAGCTTCAAGAGATCTGGCCAGTGATATTAAATATAAAGAGACATTCACAAAGAACAAGGACAAAGCAGTTGGTATGAATGTAAGTGATTCGAAGACTCTCCACTGCCTACAAGTGGCCAAGTTGAACAGTGAGATTGCCTATAAGAAGGACTCAAAGGAGACTCAGACCAAGTATAACTTGTCTATGGACATGGTGAATCTAAACCATGCAAAGAAGGCCCAAGCACTAGCCAGTGATCTGGACTATAGGAAGAAGCTTCATGACTACACCATCCTGCCTGATGACATCAAAGTGCAGCAGGCTAAGAAGGCCTACAACCTGCAGAGTGATAACCAGTACCGCTCTGATCTGATCTGGATGAAGGGAGTGGGCTGGGAGGCTGATGGGTGCCTGGATGTTGCACAGGCCAAGAAAGCTGTAGAGCTTGCGAGCGATCAAAAATACCGTCAAAAGGTGGACAGTGTGAAGTTCACCCAGGCAGCTGACACTCTATCCATCAAGCATGCCAAGAAGAGCCAGGAACTACAGAGTGATCTGGCATACAAGGCAGGCACAGAGCAGATCATCCATAAGTACACTGCGAGCAAGGATGAACCTCTCTACAGGCAGGCCAAAGCTAATGCAGAGCTTCTCAGTGATAAAACATATAAGAGTAGTTGGGAGGCCCAGAGGGACAAGGGCTTTGAGCTACGCATGGATGCACTGTCTATCCTTACTGCCAAAGCTAAGAGGGACCTTGCCAGTGATGTGAAATACAAGCAACAGTATGAGATGACAAAAGGAAAGATGATTGGGGTGAAGACTGTGACAGATGATTCTCAGTTGGCCCACTCGACACTGGCCACTAAACTCCACAGTGACCGCAACTATAAGAAAGAGTATGAGGACAGTAAGACCAAATACAGTGCGTCACTTGATATGATGACCATCAGTCATGCCAAAAAGGCCCAGGACCTGGCTACAGAGACCAACTACAGAACTTCCCTGCACAAGTACACATGCCTGCCCAGTGACATGAAGGTGGAGTGGGCCAAAAAAGCCTATGGCCAACAGAGCGATAAAAATTATCGGTCAGATCTGAACTGGATGAAGGGTGTTGGCTGGGAGACTACTGGATCTCTTGATGTACTGCAGGCTAAGAAGGCTGGCAATATCATCAGTGAGAAAAAATATCGTCAGAATGCGAGTGGTCTGAAATTCACCAGTGTGGAGGATACACCAGAGATGGTGCAGGCCAAACTCAGCAACAAACTGGCACTAGATAGGTTGTacagagagaagggagagaatgagaagcacacttacacactcacaggaGACCTGCCAGAGCATGTGCAGGCCAAGATAAACGCTATGAACCTCAGTGAGacacaCTACAAAGAATCATGGACAAAGCTCAGAGACGCGGGTTACAAATTACGTTTGGACGCTATTCCTTTCCAGGCAGCCAAATCCTCTGGAGAGATACTCAGTGATcaAAAATACAAAGAGCAGTTTGAGAAGTCGAAAGGTAAGATGATTGGCCTGAAAGGATTGCAGGATGACATTAACATTGCCCACTCAGTGCATGCCACCCATCTACAGAGTGATattaaatataagaaagaCTCTGCTAAGGGACACTCTCAGTTCCACCTCCCAATGGACATGTTAGACATGGTTCATGCTAAGAAGGCCCAGGCTCTGATCAGTGACCAAGACTACAGATTCACCCTGCACCACTACACTGCTCTGCCTGATGACCTGAAGGTGCAAGCTGCCAAGAGAGCTTATGAGCTGCAGAGTGAGaAAGCATACCGCTCTGATATGAATTACCTGCGTGGGGCTGCCTGGATTGCTACTGGTGCCTTACAGATTGAAGGCTCCAAACGTGCAACAGAGCTAATCAGTGAGAAAAAATATCGACAGCTGCCGTATGCATTTAAGCATACATCTGTTACAGATTCCCCTGACATTGTTCATGCCAAGTTCAGCAACAAGATCACCAATGAGCGACTATACAAAGAGAAAGGTGAGAACCTCAGGCATAACTACACCATCACAGCTGAACGACCAGAGATCACCCAGGCCAAGATTAACGCTGCTAATTTCAGTGATACCAAGTACAAAGAGTCCTGGCACACGCTGAGAGCTCAGGGATATAAACTGACAATGCAGGACATCCCCTTCCAGGCAGCCAAAGCATCCACAGGCATTGCCAGCGATTACTTGTACAAGCACAATCATGTTCTGGAGAAGGGCAAGCACATTGGAGCACAGAGCATTATGGATGACTCTCACCTCCTACACTGCTGGCAGATGGCACGTCTGCAGAGTGACAAGGACTACCGTAAAGATGCCATGTCCACCAGCGGGAAGTATCACCTTGGACTAGACCTAATCAACCTGGTTCATGCCAAGAAAGCCCAGGCCCTGGCCAGTGACCAGGACTACAAGAAACGCCTCCATTCCTACACTGTATTGCCTGATGACATGAAGATGCAGTGGGCAAAGAAGGCTTATGAGCTGCAGAGCcagaattTGTACAAATCAGATCTAAACTTCATGAAAGGAGTGGCCTGGGACTCAGTTGGTGCACCTCAGATTGAGTCTGCAAGAAAAGCTGGAGAGCTAATCAGTGATAAGAAATATCGTCAGCTTCCTGGCCATCTGAAGTTTACGCAAGTGGCTGATTCCCCTGACATTCTCCATGCCAAGAACAGTTACATGCAGTGTAGTGAGAGATTGTACAAGTCTGGAGATTCTGAGTCCATGCACAAATACACCCTACCCCCGGATCACCCTGACTTCATCAGAGCAAAGATCAACGCACAGCAGATCAGCGATAAAGTTTATAAGGCATCAGGAGACCAGGTGAAGTCAGCAGGCTATGACTTGAGACTAGATGCTATCCCCTTCCAGACAGCTAAGACCTCTAGAGAAATCGCTAGCGATtTCCACTACAAGGAGGCCTTTGTAAAACAGAAGGGCCAGCAGATAGGTCTCCGCAGTGTCGAGGATGACCCCAAGATGAGACATTCTCTGGCTGTAGGCAAACTGCAGAGTGACAATGAGTACAAGAAGCAGTTCCAGGAGACACGGTCTCAATTTAAGATCCATGCAGACCAGCCAGAATTCCTGCAGGCTAGGAAGAGCCAGGCTCAGGCCAGTGATATCAGATACCGCCAGCATCTCCATAACTACACATGTGACCCACAGCAGCTGAACGTCCAACATGCTAAACAGGCCTACAAGCTGCAGAGTGATGTGAAGTATAAATCTGACCTGAACTGGATAAAGGGTGTGGGCTGGACTCCTCCAGGCTCTCATAAGGTAGAAATGGCCAGGAGAGCTGCCGAGCTTGGCCTGGCTGAGGGGCTGGACACTGAGCAAGCCATCTCCAAGTATCAAGAATTTATGaTGCTCCAACGTCAGCTGCAGTTGGAGAATCAGAAGCACAGTTCCTCAGAGCAGGAGGAGACCACAGAGCAAGTCCAGCAGTCTGCTGTCAATCCAGATGCTATGGAGATTCTTCATGTCAAAAGGAAGAAGACCATCCACACTACTTTCAAACAGGCAAAAACTACAAAGTCCATGACAATGCAGTCTGTAACATCTAACTCTTCTACAAACCAGTCCCTCACCAACCAGTCCTCTGAGAAaaaattcattacaaattaGTGATGATTTCATAATTTACAGTAGTGTAAAGAAAACAGTATATAGTGATGCCATGTAGCGCCTGCTTTTCTACCAGCAATTTAATAGAGAGAATTTAAGAATATTCTGAAGTGGAGTGAAGAATATGAAGAATATTCATATGAACACAATGAATTAAATCTGAATGTGACAACGATGGAAGAATTATGAAGGTGCCGGAGAGTAAACGTAATGAAAGTGTATTAATCCAGTTTGTTGAGGTATTATTAACTGACATATGAGGAGGTTATGAACTGTAAGAACAGGTGGAATTGTGAAGGCGTCAGGATTGCTGTAATGGAAAAACAagtgcctttcttttttttttttttgtattaattaacagaTGAAACAagcagctttatttattttgaaatagcTGGAAAACTTTATTTCATTGTAGCACTGGAAGTCAAATGTATAGCTGGGTTGTATGTCACCGGTggactattattattttagactgCAAATGGCAGAAGAGTTATATTTAAGAGATGTTTGATACAGTATACATTATGCCTGGCAGGTTCAGCTTTTTGAGTATGCCGATAGCTACAGATATAAGCTCAAATAAGAGTACATGCTTGATATATGATTTATGACAAGGGGATCCAAAAATAAAGGTTTTTGAAAACTA

Function

symbol description
nrap Predicted to enable actin filament binding activity. Predicted to be involved in cardiac muscle thin filament assembly. Predicted to be active in Z disc. Orthologous to human NRAP (nebulin related anchoring protein).

NR:

description
PREDICTED: nebulin-related-anchoring protein

GO: NA

KEGG:

id description
K24421 NRAP; nebulin-related-anchoring protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915025.2 True 6325 mRNA 0.45 43 13204326 13219416

Neighbor

gene id symbol gene type direction distance location
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 9196 13193024 ~ 13195130 (+)
LOC113527338 dclre1a coding upstream 26404 13167086 ~ 13177922 (+)
dclre1a dclre1a coding upstream 48329 13145880 ~ 13155997 (+)
ccdc186 ccdc186,LOC107755417,LOC107689962 coding upstream 91321 13091186 ~ 13113005 (+)
afap1l2 afap1l2 coding upstream 147551 13025631 ~ 13056775 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding downstream 108284 13327700 ~ 13331070 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding downstream 122159 13341575 ~ 13350475 (+)
vti1a vti1a,LOC107702459,LOC107566351 coding downstream 136436 13355852 ~ 13462044 (+)
crygmx LOC108273487 coding downstream 394783 13614199 ~ 13617164 (+)
entpd1 entpd1 coding downstream 420761 13640177 ~ 13655847 (+)
LOC113527319 NA non-coding upstream 137704 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 359765 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 546003 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 560800 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 653966 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 247349 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 295260 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 399248 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 474299 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 804171 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 182331 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 730343 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1118967 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1583057 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1918058 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 263885 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 794157 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1067943 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3636273 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4326377 17545793 ~ 17572065 (+)

Expression


Co-expression Network