LOC113527338 (dclre1a)


Basic Information

Item Value
gene id LOC113527338
gene name dclre1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13167086 ~ 13177922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915026.2
AAGTAGGCACATTCATAGGACTATATCCGTATCAGCACATTCGTCATACCTTATAATTATTAACTCTTTGTCTTAGCACATCTCACGATGTATTTGCTAGTGAATAGaatagttatattttaaataatttatttattaaagattaccACTAATTATGCTAGAGAGCAAAAGAAACGGTGCTCGAAAATGCGGATTGCGAACGTactctttgttttctttccgCACTGGCGGTAAGTGTGTAATGAAAGAGGTGCACTTTTGAAGCGGTTATTCTGTGCCTTATAAACTTTACGTGAGACATGCCAAGCTTTGAACGAGAATGAGAGCTTTCTTTTGCTTCTACAATACATGGCGCCTCGGTCCTGTGTGTAACAGTGTTCAGTAATTTGAGTAAACTCTGATACTGATGTCACAGAGCGAGTCTGAGAGCGACATCTGGGAATACAAATCTCTTAAGAAGActaaaagacaagacaaaactCCGAAATCTAGTGAAGATGGATCAAAGCGACGGAGGCTGGCAAAGCAAGGGGCGTCAAAGAAAAAGTCAGATAAATCCTGCAGAGGGGGTAGATTGAGTACTGAGCCCAAGACAGCGACTAAACTATGTACACAGAGTCAGCCTGTTCAAGTGACCAATGCAGACGGACCACTAACCAAATCCTCCCTACCATCCGGCTCACAGTCAGCCGAAGTGCATGATGGGCCATCAGATCAGTCCAGGGGTTACTGTCCTGTCTGTCAAATGCCATTTTCCATTTTGGTCGTCCAGACAGCACAATGGCATGTTGCTGAATGCCTGGAGAACCCTGGAGAAACAAGTAAAGAATGTCCAGATGGCCTACAATGCTCCTCCTCCATTCCAAACCACTACAAGTGGTACAGCCACTCTCTTTTAGCTCACAGTCGAGCACTAAATGCCACAGAGTCTGCATCTTCAATACTGGGCCACACGCCTAGATTCCATCTGGAGCAGAAGACGTTTCATAATGATACCATTATTTATAGTAAAGATAGCGTTGTGGACAGTGCTGTCAATCTGTCCACTGCATCCAGCCAGAGTGCCTTTCCTGCTCATGGATCTAGAGAATCTCTTACTCCTGTCCGTCCTAATGCCTTCCAGCTCTTGCGCTCACCAGGGCCTGAGGatattaagaaaaagaaaggctggtccCCTTCTACCAAAGGACCTAGATCTCACACCTCAACTCAGGAAGCTAAAATTAGGATGTCAACCCCAGTGAAAGCAGGAAATGTAAGTCATGATGTTCAGACTAGAGAAGTAAAAGAGGAACCATGTACTttaggtgatgatgatgattatatcTCATACTCTCCTCTTTCTGAGCTCCCTGCTGAGACTGAAGAGAAGCAGATAAAGAAAAAACTGTTTCACAGTACAGCACTAGAGGAGGTGAATGAGAAAGATGATCATTCTGATTCACTGATATTGTTCAATGATAGTGCACTGAGTGGTGATGACCTGTTTGCTGATGTCTTGGATCAGTATGAAACCGAGAGAGTCAGAAGTCCAGGAGATCCAGTCATTAAGGAGTCTCTGTACACCTGTGACCAATTAGAGTCATTAGAGTCACATGAACATTTGACAAGTTCCAGCTGTGCAGGCCCTACTGATGGACCTCTTCAGTCCAGTTCCCCTTTTAGACACTCAAAAGACGTGcatgtgaagaaagaaagggaagatAATCCTCAGCTACCGTCTCCTCAAAGTCTGGTCCTGGAACGTCTTCGTGAATGCATATCAACTGCTGCAAAGTTCGAAAGTCTTAATTCTACTTGTGTTGATGTAAAGTCTGATTCTTTGAATCAGGAAATGTCTTCCACTCAAACAATCTTGGCCACTAGGAAACAAACTCTTTCCCTGACACCCAAAAATCCCAACCAAAGCAGGAGCATCTGGTTTAAAAACAAACTGATATTGGAGTCTTTTTTTGGACTGAAGCCtttgaaagaaaagagagaggaagttaGCACAACTGTGGAAGAGAAAGTCCAGGTGAGCTCTGCTTCAGGGAAGAGCTCAGGAGCCGCAGAGCGACAGACTAGACGGAGGAAGAACACGGCAGTATCTGAAGTGACCACGATGAGGGAAGAAGCAGGAGAAGGAGCTGCTCAGCCTACGCAAACAGAAGGCAGCCGAGGAGCGAGGGCATGGGGGAGGAAGAGGTGGAACAAAACAAGAGCGACAGATGGAGAAGCAGAAGAGCCCAAACGATGCCCGTTCTACAAGAAAATCCCTGGAACGAGTTTTGCTGTGGATGCTTTTCAGTATGGGAATATCAAAGGCATTACGGCCTACTTCCTCACACATTTCCACTCTGATCACACGGGAGGACTGAAGAAAACCTCAACTTTTCCTATCTATTGTAATAAAATAACAGGCAACCTGGTGAAGAGTAAACTGCATGTGGATGAGCAGTATATCCATACTCTCCCCATGAATGAGGAATGTGTAGTCGATGGTGTAAAGGTTATCCTACTAGATGCCAATCACTGTCCAGGATCAGCCATGCTGCTGTTGCTATTGCCAGATGGCCAGACTGTGCTCCACACGGGCGACTTCCGGGCTCATCCGTCCATGGAGCTACCGGAGTTGCAGGGCGTCAGGATTCAGACACTTTATCTGGACACCACGTACTGCAGTCCAGAATATGCATTTCCCACACAGCAGGAAGTGATCACCTTTGCTGCTAACACAGCCTTTGAGCTGGTCACACTCAACCCTCGCACGCTGATTGTGTGTGGCACCTACTCTGTGGGAAAGGAGAAGGTGTTCTTAGCCATTTCTCAGGTGCTGGATTCAAAGGTCTATATGTCCAAAGATCGTTATAAAACCATGTGCTGTCTAGAGTCGGAGCACATCTACCAGTGTATTACCACAGACATGAAGGCAGCTCGGATCCATGTTCTTCCCATGATGCAGATCAATTTCAAGaatttaaaaacatacttGAACAAGTTTTCTGGTACGTATGACCAGCTGGTGGCATTCAAACCCACGGGCTGGACCTTCAGTCAGGAAGTGGGTGTGGCGCACATACAACCTCAGGTCAAAGACAACATCAGTATTTATGGTATTCCATACAGTGAACACAGTAGCTACCTGGAGCTGAAGCGCTTTGTGCAGTGGCTGCGGCCACTGAAGATCATTCCCACAGTGAACGTGGGCAGTTGGAGCAGCAGGAAGGCCATGACCAACTGCTTCAGTGAGTGGCAAGCAGAGGTTAAAGCTCTAAATGTTGGACCAAGGAGTGACCATAAAAAAGGCTCCTGTACAAGATAGTAACTGATCACTGCCTCACCACAGATCAGCGTTTGGCCAAGTAGTCAAATTGTGTATTCAGATCCCAAAGGCAAGCCTGGTTATAAGCATAATCTTCTCATTTAGAGCAATGCAGAAGAAAATTTGGAACCAcggttttagtgtgtgtttttaaattgttgccTTTGCAGTTTTACATTGGTGCCATTCCTCATTCTGGTACAGAAACAAATGTCATTGTTTATCTCAAGTTACCAATCAAAGTAATTAGTAATGAATGCACTAAATCTGAGGTTCATTCTGAGGTGGACTATTCTGTTCCAATACATTTCCTGTGCCATAACTCTATCATTGTCtatgaatgttttaaatgtttaaaatatgcaaatatgtgcaaataaatcttttaaataatgAG

Function

symbol description
dclre1a Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining; interstrand cross-link repair; and protection from non-homologous end joining at telomere. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human DCLRE1A (DNA cross-link repair 1A).

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915026.2 True 3701 mRNA 0.44 12 13167086 13177922

Neighbor

gene id symbol gene type direction distance location
dclre1a dclre1a coding upstream 11089 13145880 ~ 13155997 (+)
ccdc186 ccdc186,LOC107755417,LOC107689962 coding upstream 54081 13091186 ~ 13113005 (+)
afap1l2 afap1l2 coding upstream 110311 13025631 ~ 13056775 (+)
gfra1b gfra1,gfra1b,LOC107707958,LOC107581544,LOC107755550,LOC107689950,LOC107702444 coding upstream 329703 12811647 ~ 12837383 (+)
bms1 bms1,LOC107689949,LOC107675025 coding upstream 551868 12596373 ~ 12615218 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding downstream 15102 13193024 ~ 13195130 (+)
nrap nrap,LOC107755535 coding downstream 26404 13204326 ~ 13219416 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding downstream 149778 13327700 ~ 13331070 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding downstream 163653 13341575 ~ 13350475 (+)
vti1a vti1a,LOC107702459,LOC107566351 coding downstream 177930 13355852 ~ 13462044 (+)
LOC113527319 NA non-coding upstream 100464 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 322525 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 508763 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 523560 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 616726 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 288843 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 336754 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 440742 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 515793 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 845665 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 145091 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 693103 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1081727 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1545817 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1880818 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 305379 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 835651 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1109437 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3677767 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4367871 17545793 ~ 17572065 (+)

Expression


Co-expression Network