aarsd1 (aarsd1,LOC107695514,LOC107739756,LOC107708900)


Basic Information

Item Value
gene id aarsd1
gene name aarsd1,LOC107695514,LOC107739756,LOC107708900
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6756785 ~ 6766100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915154.2
TGTCTCTTTACCCTGTTGTTCATTCAATAAAGTTTCTTTCCGGCTTCGTTTCAGCTGTGTAACATGGCTTTTCAGTGTCAGAGGGATAGTTATATGCAAGAATTTGTCACGTCGGTGGTGTCCTGTTCACCCGCCGAACTGAAGCTGGACAACAACGGCAAGAAGGAAAAAGTGAAGGGCTTCAATGTGATATTAAAAGACACCATTCTGTTCCCTGAGGGAGGCGGACAGCCTGATGACCATGGAACCATTGAGGATCTGCCTGTGGTGCGAGTGTTGAGGCAGGGAGCAGAGGCAGTGCACTTCATCAGCTCAGCTTTAGAGGAAGGCCGTGAGGTTCAGCTCAAGGTGGACTGGGAGCGTAGGTTTGATCACATGCAGCAGCATTCAGGCCAACATCTGATCACTGCCTTGGCAGACAAAATGTTTGGATATAAAACTACCTCATGGGAGTTGGGCCGTCAGCGCAGCAGTATCGAGCTGGATACAGCCTCTGTGAAGCCAGGAGAGATGGAAGCGTTAGAGGATGCAGTCAATAACAGGATCCGTGATCATGTCCCAGTCAATGTGCGCCTCCTCTCTATAGATGACCCTGATGTGGAGAAGGTAAGGAGCAGAGGGCTTCCTGATGATCATGCTGGACCAATCAGGATCATTGATATTGAGGGAATAGACACCAATATGTGTTGTGGGACCCACGTATCCAATCTCAGTCATCTACAGGTAATTAAGATTCTCGGGACGGAGAAAGGGAAGAAGAATAAGACCAACTTAATTTTCATAGCTGGAAACAGAGTATTGAAATACGCAGAGAAAAGCTACAACACTGAAAAGTTGTTGACGTCACTGCTGAAAACAGGGCCAGATGAGCATGTCGATGCCGTGGACAAGCTGCAGAAAACAGTGAAGCGCCTTCAGAAGAGTAACCTCACTATCCTCAGGGACATGGCTGTTCTTATAGCACAGAACTTCAAGAGCCAGCCAGCAAGAGGCGACTTCTTCAGTTTGCACAACAAGGATGGTGATAACGAGTTCATGAACATCATCGCCAATGAGATTGGCTTTCAGGACACAATCATTTTCTTGACAGTGGGAGAAGAGAAAGGAGCAGGACTTTTTCTGCTTGCAGGGCCTGAGAACGTCATAACTGAATTGGGGCCACGAGTAGTGGAGCTGCTACAGGGAAAAGGTGCCGGAAAGAACGGCCGTTTCCAAGGCAAGGCCAACAGCCTGGCAAAGAGAGCCGAGGTGGAGGCTCTGCTGCAGAAGCACAGCTGCCGGCGCGCTGCAGGAGAGGAgtgacagatgaacagatagatCCTGGTGCCCTGACTGCCTAAAGAGCACATGAAGCTTCAGCTGGAATGACAACAACCAAATCTCTGTAAACAGCCACTATGacaaatttatttgttaatCTTGTTCATCTTTGTGCTGTTGGGCAATCTAAGTTAAATCAGGTTTATTTATGAAGCATGTCTAAAGCAAGAAACATATGTGCTGTTAAGTTTATtcaatcaacaacaacaaaaacacacacacacaaagcccatGCAGATCAGTTACATAGATGTGCaaataattaaattgaattttgtaTGTTATcaacatttataccacagctctttTGATTTCTCGAATTGGTCAAACAGTCTTTTCTGTAACATTCAGACAGTAGTGCTGACttatttaaatcacaggtttgtagtAATGCACTCATTgtaatgttactgtttctatagtaacagtgcATACACAGTGACTTGACAATCTACATCTACAGGCTAATAATAAAGATGGATCAAAAATgctatttaatgaagaaaaacctataattgttgatgtggtgaagttttctgtaaggagatgtttactaTCTGTGGCTTCAGTCAGCAAGTTGTCCTCCACgagaagtcttcaggacagaggacttagTTCTTTCCGGTTTCTTTCAGGAGAGATaacaaaagagaggctggtaaaggaatgattgtttatagttgctataacgtaagtgataacaggagcttgtctcatggatgttgtGCAACAGTAcctgtaattataaatggttaaaaggcATGATgcattgtttattaataaattaacaaagtGTActcatgctgtggtataaataaaaaagaaaaataacccATTTACAAAAAGTCCTCTTGTCAAGAATCCTGTTGGAGATCCTAaatatctgttttatttatgtatgccTTGAGTGTATATGTCTAGAAGCAAGACTAGAAAGAGCCTGTGAATAGGAAATGCTGATAAATGACAAGCTTGCTCCatatattttgaatgttttattaaaaataaatgttttcaaaaatagaATTTTACAGAAGGCACAAGCAACTATCATTtccatacacacagacaaaaatgaGGGATTTCACAATACAGGCAAGCAGAACTTTCTGTTTGATTGcgtgaaataaaacaatgctCTTCATCCCTGTCATAAAGTAATACATCTCAGTTCTTAAAAACGAACCTCATCTAAAAGCATTTGTGTGCTTGGGCTAGACGCCAAGCCTATTCTCAGTACACTTAAAGAGCACTAAGATACGAGTTATgagattaaataaaacagtaatctAAACACAACACCGTAATCCTGAGCAATAAACAACTTTTTACAGTG

Function

symbol description
aarsd1 Predicted to enable Ser-tRNA(Ala) hydrolase activity. Predicted to be involved in regulation of translational fidelity. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in cytoplasm. Is expressed in midbrain; myotome; optic vesicle; pectoral fin; and retina. Orthologous to several human genes including PTGES3L-AARSD1 (PTGES3L-AARSD1 readthrough).

NR:

description
alanyl-tRNA editing protein Aarsd1

GO:

id name namespace
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07050 AARSD1, ALAX; misacylated tRNA(Ala) deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915154.2 True 2656 mRNA 0.42 12 6756785 6766100

Neighbor

gene id symbol gene type direction distance location
g6pca.1 LOC108274343 coding downstream 4053 6747052 ~ 6752732 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding downstream 16203 6727581 ~ 6740582 (-)
dlx4b LOC108274309 coding downstream 110211 6637355 ~ 6646574 (-)
abi3b LOC108273397 coding downstream 243700 6507850 ~ 6513085 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding downstream 252056 6465015 ~ 6504729 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 70337 6836437 ~ 6847966 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding upstream 281471 7047571 ~ 7232075 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding upstream 655866 7421966 ~ 7427834 (-)
zgc:171971 LOC108273425 coding upstream 669409 7435509 ~ 7442712 (-)
fam13c fam13c coding upstream 780963 7547063 ~ 7560750 (-)
G192014 dlx3 non-coding downstream 134142 6621470 ~ 6622643 (-)
G192012 NA non-coding downstream 210532 6545032 ~ 6546253 (-)
G191947 NA non-coding downstream 268046 6463488 ~ 6488739 (-)
G192070 NA non-coding upstream 23766 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 30011 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 33542 6799642 ~ 6800076 (-)
G192075 sgms1 non-coding upstream 42105 6808205 ~ 6809758 (-)
G192074 NA non-coding upstream 47065 6813165 ~ 6815435 (-)
itga3b itga3 other downstream 162395 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 965515 5768528 ~ 5791270 (-)
G191430 NA other downstream 1142831 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1265860 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1693367 5059498 ~ 5063418 (-)
ipmkb ipmk other upstream 633900 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 815250 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 835118 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2081562 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 2602117 9368217 ~ 9419487 (-)

Expression


Co-expression Network